| Year |
Citation |
Score |
| 2019 |
Burrell AM, Goddard JHR, Greer PJ, Williams RJ, Pepper AE. Sporadic genetic connectivity among small insular populations of the rare geoendemic plant Caulanthus amplexicaulis var. barbarae (Santa Barbara Jewelflower). The Journal of Heredity. PMID 31062855 DOI: 10.1093/Jhered/Esz029 |
0.48 |
|
| 2019 |
Swope SM, Pepper AE, Lee GT, Burnett BA, Horten HM. Development of 15 microsatellite loci in the endangered subsp. (Brassicaceae). Applications in Plant Sciences. 7: e01215. PMID 30828502 DOI: 10.1002/Aps3.1215 |
0.502 |
|
| 2018 |
Janga MR, Pandeya D, Campbell LM, Konganti K, Villafuerte ST, Puckhaber L, Pepper A, Stipanovic RD, Scheffler JA, Rathore KS. Genes regulating gland development in the cotton plant. Plant Biotechnology Journal. PMID 30467959 DOI: 10.1111/Pbi.13044 |
0.349 |
|
| 2017 |
Hawkins AK, Garza ER, Dietz VA, Hernandez OJ, Hawkins WD, Burrell AM, Pepper AE. Transcriptome signatures of selection, drift, introgression, and gene duplication in the evolution of an extremophile endemic plant. Genome Biology and Evolution. PMID 29220486 DOI: 10.1093/Gbe/Evx259 |
0.484 |
|
| 2017 |
Kushanov FN, Buriev ZT, Shermatov SE, Turaev OS, Norov TM, Pepper AE, Saha S, Ulloa M, Yu JZ, Jenkins JN, Abdukarimov A, Abdurakhmonov IY. QTL mapping for flowering-time and photoperiod insensitivity of cotton Gossypium darwinii Watt. Plos One. 12: e0186240. PMID 29016665 DOI: 10.1371/Journal.Pone.0186240 |
0.501 |
|
| 2017 |
Hinze LL, Hulse-Kemp AM, Wilson IW, Zhu QH, Llewellyn DJ, Taylor JM, Spriggs A, Fang DD, Ulloa M, Burke JJ, Giband M, Lacape JM, Van Deynze A, Udall JA, Scheffler JA, ... ... Pepper AE, et al. Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array. Bmc Plant Biology. 17: 37. PMID 28158969 DOI: 10.1186/S12870-017-0981-Y |
0.495 |
|
| 2016 |
Kushanov FN, Pepper AE, Yu JZ, Buriev ZT, Shermatov SE, Saha S, Ulloa M, Jenkins JN, Abdukarimov A, Abdurakhmonov IY. Development, genetic mapping and QTL association of cotton PHYA, PHYB, and HY5-specific CAPS and dCAPS markers. Bmc Genetics. 17: 141. PMID 27776497 DOI: 10.1186/S12863-016-0448-4 |
0.504 |
|
| 2016 |
Abdurakhmonov IY, Ayubov MS, Ubaydullaeva KA, Buriev ZT, Shermatov SE, Ruziboev HS, Shapulatov UM, Saha S, Ulloa M, Yu JZ, Percy RG, Devor EJ, Sharma GC, Sripathi VR, Kumpatla SP, ... ... Pepper AE, et al. RNA Interference for Functional Genomics and Improvement of Cotton (Gossypium sp.). Frontiers in Plant Science. 7: 202. PMID 26941765 DOI: 10.3389/Fpls.2016.00202 |
0.367 |
|
| 2015 |
Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, ... ... Pepper AE, et al. Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp. G3 (Bethesda, Md.). 5: 1187-209. PMID 25908569 DOI: 10.1534/G3.115.018416 |
0.489 |
|
| 2015 |
Burrell AM, Pepper AE, Hodnett G, Goolsby JA, Overholt WA, Racelis AE, Diaz R, Klein PE. Exploring origins, invasion history and genetic diversity of Imperata cylindrica (L.) P. Beauv. (Cogongrass) in the United States using genotyping by sequencing. Molecular Ecology. 24: 2177-93. PMID 25864837 DOI: 10.1111/Mec.13167 |
0.704 |
|
| 2015 |
Logan-Young CJ, Yu JZ, Verma SK, Percy RG, Pepper AE. SNP discovery in complex allotetraploid genomes (Gossypium spp., Malvaceae) using genotyping by sequencing. Applications in Plant Sciences. 3. PMID 25798340 DOI: 10.3732/Apps.1400077 |
0.419 |
|
| 2014 |
Yu JZ, Ulloa M, Hoffman SM, Kohel RJ, Pepper AE, Fang DD, Percy RG, Burke JJ. Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. × G. barbadense L.) RIL population. Molecular Genetics and Genomics : Mgg. 289: 1347-67. PMID 25314923 DOI: 10.1007/S00438-014-0930-5 |
0.546 |
|
| 2014 |
Ryan DE, Pepper AE, Campbell L. De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis. Bmc Genomics. 15: 888. PMID 25306556 DOI: 10.1186/1471-2164-15-888 |
0.307 |
|
| 2014 |
Abdurakhmonov IY, Buriev ZT, Saha S, Jenkins JN, Abdukarimov A, Pepper AE. Phytochrome RNAi enhances major fibre quality and agronomic traits of the cotton Gossypium hirsutum L. Nature Communications. 5: 3062. PMID 24430163 DOI: 10.1038/Ncomms4062 |
0.36 |
|
| 2014 |
Ivalú Cacho N, Millie Burrell A, Pepper AE, Strauss SY. Novel nuclear markers inform the systematics and the evolution of serpentine use in Streptanthus and allies (Thelypodieae, Brassicaceae). Molecular Phylogenetics and Evolution. 72: 71-81. PMID 24333439 DOI: 10.1016/J.Ympev.2013.11.018 |
0.389 |
|
| 2014 |
Goolsby JA, Gaskin JF, Tarin DV, Pepper AE, Henne DC, Auclair A, Racelis AE, Summy KR, Moran PJ, Thomas DB, Yang C, Jiménez MM, Ciomperlik MJ, De León AAP, Kirk AA. Establishment and spread of a single parthenogenic genotype of the mediterranean arundo wasp, tetramesa romana1, in the variable climate of Texas Southwestern Entomologist. 39: 675-690. DOI: 10.3958/059.039.0414 |
0.329 |
|
| 2013 |
Tarin D, Pepper AE, Goolsby JA, Moran PJ, Arquieta AC, Kirk AE, Manhart JR. Microsatellites uncover multiple introductions of Clonal giant reed (Arundo donax) Invasive Plant Science and Management. 6: 328-338. DOI: 10.1614/Ipsm-D-12-00085.1 |
0.403 |
|
| 2012 |
Burrell AM, Hawkins AK, Pepper AE. Genetic analyses of nickel tolerance in a North American serpentine endemic plant, Caulanthus amplexicaulis var. barbarae (Brassicaceae). American Journal of Botany. 99: 1875-83. PMID 23125430 DOI: 10.3732/Ajb.1200382 |
0.691 |
|
| 2012 |
Yu JZ, Kohel RJ, Fang DD, Cho J, Van Deynze A, Ulloa M, Hoffman SM, Pepper AE, Stelly DM, Jenkins JN, Saha S, Kumpatla SP, Shah MR, Hugie WV, Percy RG. A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. G3 (Bethesda, Md.). 2: 43-58. PMID 22384381 DOI: 10.1534/G3.111.001552 |
0.493 |
|
| 2012 |
Terry MK, Pepper AE, Strong AW, Tarin DM, Price DM, Manhart JR. Genetic structure of a population of the endangered star cactus (Astrophytum asterias) in southern Texas Southwestern Naturalist. 57: 182-188. DOI: 10.1894/0038-4909-57.2.182 |
0.452 |
|
| 2012 |
Hammer RL, Hatch SL, Pepper AE, Manhart JR. Concordance between molecular and morphological evidence of hybridization in the dichanthelium acuminatum (Poaceae: Paniceae) subspecies complex Southwestern Naturalist. 57: 133-137. DOI: 10.1894/0038-4909-57.2.133 |
0.382 |
|
| 2011 |
Matakis S, Overath RD, Kutil B, Pepper AE, Manhart JR. Isolation and characterization of microsatellite markers for Bothriochloa ischaemum (Poaceae). American Journal of Botany. 98: e192-4. PMID 21700803 DOI: 10.3732/Ajb.1100102 |
0.378 |
|
| 2011 |
Burrell AM, Taylor KG, Williams RJ, Cantrell RT, Menz MA, Pepper AE. A comparative genomic map for Caulanthus amplexicaulis and related species (Brassicaceae). Molecular Ecology. 20: 784-98. PMID 21284744 DOI: 10.1111/J.1365-294X.2010.04981.X |
0.695 |
|
| 2011 |
Burrell AM, No E, Pepper AE. Discovery of nuclear and plastid microsatellites, and other key genomic information, in the rare endemic plant (Caulanthus amplexicaulis var. barbarae) using minimal 454 pyrosequencing Conservation Genetics Resources. 3: 753-755. DOI: 10.1007/S12686-011-9450-3 |
0.473 |
|
| 2010 |
Abdurakhmonov IY, Buriev ZT, Logan-Young CJ, Abdukarimov A, Pepper AE. Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.). Bmc Plant Biology. 10: 119. PMID 20565911 DOI: 10.1186/1471-2229-10-119 |
0.337 |
|
| 2009 |
Abdurakhmonov IY, Saha S, Jenkins JN, Buriev ZT, Shermatov SE, Scheffler BE, Pepper AE, Yu JZ, Kohel RJ, Abdukarimov A. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica. 136: 401-17. PMID 19067183 DOI: 10.1007/S10709-008-9337-8 |
0.523 |
|
| 2008 |
Friedman JM, Roelle JE, Gaskin JF, Pepper AE, Manhart JR. Latitudinal variation in cold hardiness in introduced Tamarix and native Populus. Evolutionary Applications. 1: 598-607. PMID 25567800 DOI: 10.1111/J.1752-4571.2008.00044.X |
0.421 |
|
| 2008 |
Abdurakhmonov IY, Kohel RJ, Yu JZ, Pepper AE, Abdullaev AA, Kushanov FN, Salakhutdinov IB, Buriev ZT, Saha S, Scheffler BE, Jenkins JN, Abdukarimov A. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm. Genomics. 92: 478-87. PMID 18801424 DOI: 10.1016/J.Ygeno.2008.07.013 |
0.536 |
|
| 2008 |
Ueda A, Li P, Feng Y, Vikram M, Kim S, Kang CH, Kang JS, Bahk JD, Lee SY, Fukuhara T, Staswick PE, Pepper AE, Koiwa H. The Arabidopsis thaliana carboxyl-terminal domain phosphatase-like 2 regulates plant growth, stress and auxin responses. Plant Molecular Biology. 67: 683-97. PMID 18506580 DOI: 10.1007/S11103-008-9348-Y |
0.334 |
|
| 2007 |
Abdurakhmonov IY, Kushanov FN, Djaniqulov F, Buriev ZT, Pepper AE, Fayzieva N, Mavlonov GT, Saha S, Jenkins JN, Abdukarimov A. The role of induced mutation in conversion of photoperiod dependence in cotton. The Journal of Heredity. 98: 258-66. PMID 17406024 DOI: 10.1093/Jhered/Esm007 |
0.387 |
|
| 2007 |
Abdurakhmonov IY, Buriev ZT, Saha S, Pepper AE, Musaev JA, Almatov A, Shermatov SE, Kushanov FN, Mavlonov GT, Reddy UK, Yu JZ, Jenkins JN, Kohel RJ, Abdukarimov A. Microsatellite markers associated with lint percentage trait in cotton, Gossypium hirsutum Euphytica. 156: 141-156. DOI: 10.1007/S10681-007-9361-2 |
0.419 |
|
| 2006 |
Blenda A, Scheffler J, Scheffler B, Palmer M, Lacape JM, Yu JZ, Jesudurai C, Jung S, Muthukumar S, Yellambalase P, Ficklin S, Staton M, Eshelman R, Ulloa M, Saha S, ... ... Pepper A, et al. CMD: a Cotton Microsatellite Database resource for Gossypium genomics. Bmc Genomics. 7: 132. PMID 16737546 DOI: 10.1186/1471-2164-7-132 |
0.377 |
|
| 2006 |
Song BH, Clauss MJ, Pepper A, Mitchell-Olds T. Geographic patterns of microsatellite variation in Boechera stricta, a close relative of Arabidopsis. Molecular Ecology. 15: 357-69. PMID 16448406 DOI: 10.1111/J.1365-294X.2005.02817.X |
0.49 |
|
| 2006 |
Gaskin JF, Pepper AE, Manhart JR. Isolation and characterization of 10 polymorphic microsatellites in saltcedars (Tamarix chinensis and Tamarix ramosissima) Molecular Ecology Notes. 6: 1147-1149. DOI: 10.1111/J.1471-8286.2006.01466.X |
0.392 |
|
| 2006 |
Terry M, Pepper AE, Manhart JR. Development and characterization of microsatellite loci in endangered Astrophytum asterias (Cactaceae) Molecular Ecology Notes. 6: 865-866. DOI: 10.1111/J.1471-8286.2006.01377.X |
0.47 |
|
| 2006 |
BURRELL AM, PEPPER AE. Primers for 10 polymorphic microsatellites from Caulanthus amplexicaulis var. barbarae, and cross-amplification in other species within the Streptanthoid Complex (Brassicaceae) Molecular Ecology Notes. 6: 770-772. DOI: 10.1111/J.1471-8286.2006.01337.X |
0.44 |
|
| 2005 |
Johnston JS, Pepper AE, Hall AE, Chen ZJ, Hodnett G, Drabek J, Lopez R, Price HJ. Evolution of genome size in Brassicaceae. Annals of Botany. 95: 229-35. PMID 15596470 DOI: 10.1093/Aob/Mci016 |
0.38 |
|
| 2005 |
Bolek Y, El-Zik KM, Pepper AE, Bell AA, Magill CW, Thaxton PM, Reddy OUK. Mapping of verticillium wilt resistance genes in cotton Plant Science. 168: 1581-1590. DOI: 10.1016/J.Plantsci.2005.02.008 |
0.436 |
|
| 2002 |
Pepper AE, Corbett RW, Kang N. Natural variation in Arabidopsis seedling photomorphogenesis reveals a likely role for TED1 in phytochrome signalling Plant, Cell and Environment. 25: 591-600. DOI: 10.1046/j.1365-3040.2002.00840.x |
0.38 |
|
| 2001 |
Pepper AE, Seong-Kim MS, Hebst SM, Ivey KN, Kwak SJ, Broyles DE. shl, a new set of Arabidopsis mutants with exaggerated developmental responses to available red, far-red, and blue light Plant Physiology. 127: 295-304. PMID 11553757 DOI: 10.1104/Pp.127.1.295 |
0.317 |
|
| 2001 |
Pepper AE, Norwood LE. Evolution of Caulanthus amplexicaulis
var. barbarae
(Brassicaceae), a rare serpentine endemic plant: a molecular phylogenetic perspective American Journal of Botany. 88: 1479-1489. DOI: 10.2307/3558456 |
0.46 |
|
| 2001 |
Abdalla AM, Reddy OUK, El-Zik KM, Pepper AE. Genetic diversity and relationships of diploid and tetraploid cottons revealed using AFLP Theoretical and Applied Genetics. 102: 222-229. DOI: 10.1007/S001220051639 |
0.506 |
|
| 2001 |
Iqbal M, Reddy O, El-Zik K, Pepper A. A genetic bottleneck in the ’evolution under domestication’ of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting Theoretical and Applied Genetics. 103: 547-554. DOI: 10.1007/Pl00002908 |
0.512 |
|
| 1998 |
Neff MM, Neff JD, Chory J, Pepper AE. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. The Plant Journal : For Cell and Molecular Biology. 14: 387-92. PMID 9628033 DOI: 10.1046/J.1365-313X.1998.00124.X |
0.307 |
|
| 1998 |
Pepper AE. Molecular evolution: old branches on the phytochrome family tree. Current Biology : Cb. 8: R117-20. PMID 9501973 DOI: 10.1016/S0960-9822(98)70985-6 |
0.346 |
|
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