Year |
Citation |
Score |
2022 |
Chen W, Carel T, Awile O, Cantarutti N, Castiglioni G, Cattabiani A, Del Marmol B, Hepburn I, King JG, Kotsalos C, Kumbhar P, Lallouette J, Melchior S, Schürmann F, De Schutter E. STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale. Frontiers in Neuroinformatics. 16: 883742. PMID 36387588 DOI: 10.3389/fninf.2022.883742 |
0.569 |
|
2022 |
Chen W, Hepburn I, Martyushev A, De Schutter E. Modeling Neurons in 3D at the Nanoscale. Advances in Experimental Medicine and Biology. 1359: 3-24. PMID 35471533 DOI: 10.1007/978-3-030-89439-9_1 |
0.501 |
|
2017 |
Chen W, De Schutter E. Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. Frontiers in Neuroinformatics. 11: 13. PMID 28239346 DOI: 10.3389/fninf.2017.00013 |
0.548 |
|
2017 |
Chen W, De Schutter E. Time to Bring Single Neuron Modeling into 3D. Neuroinformatics. PMID 28058618 DOI: 10.1007/s12021-016-9321-x |
0.476 |
|
2016 |
Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK, Kilpatrick ZP, Bennett MR, Josić K, Elices I, Arroyo D, ... ... Chen W, et al. 25th Annual Computational Neuroscience Meeting: CNS-2016 Bmc Neuroscience. 17: 54. PMID 27534393 DOI: 10.1186/S12868-016-0283-6 |
0.646 |
|
2015 |
Hepburn I, Chen W, De Schutter E. Accurate approximation to stochastic reaction diffusion on unstructured meshes in STEPS Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P55 |
0.499 |
|
2015 |
Chen W, Hepburn I, De Schutter E. Implementation of parallel spatial stochastic reaction-diffusion simulation in STEPS Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P54 |
0.522 |
|
2014 |
Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E. Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Frontiers in Cellular Neuroscience. 8: 168. PMID 25100945 DOI: 10.3389/Fncel.2014.00168 |
0.504 |
|
2014 |
Chen W, De Schutter E. Python-based geometry preparation and simulation visualization toolkits for STEPS. Frontiers in Neuroinformatics. 8: 37. PMID 24782754 DOI: 10.3389/fninf.2014.00037 |
0.495 |
|
2014 |
Simon CM, Hepburn I, Chen W, De Schutter E. The role of dendritic spine morphology in the compartmentalization and delivery of surface receptors. Journal of Computational Neuroscience. 36: 483-97. PMID 24113809 DOI: 10.1007/S10827-013-0482-4 |
0.467 |
|
2014 |
Hepburn I, Chen W, De Schutter E. Accurate approximation and MPI parallelization of spatial stochastic reaction-diffusion in STEPS Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P177 |
0.5 |
|
2013 |
Anwar H, Hepburn I, Nedelescu H, Chen W, De Schutter E. Stochastic calcium mechanisms cause dendritic calcium spike variability. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 15848-67. PMID 24089492 DOI: 10.1523/Jneurosci.1722-13.2013 |
0.465 |
|
2013 |
Chen W, Hepburn I, De Schutter E. Dendritic Volume Mesh Reconstruction for STEPS: How Does Mesh Quality Affect Stochastic Reaction-Diffusion Simulation? Bmc Neuroscience. 14. DOI: 10.1186/1471-2202-14-S1-P95 |
0.519 |
|
2013 |
Jain A, Hepburn I, Chen W, De Schutter E. Initial state of single spines affects probability of induction of cerebellar long term depression in a stochastic model Bmc Neuroscience. 14. DOI: 10.1186/1471-2202-14-S1-P92 |
0.423 |
|
2012 |
Hepburn I, Chen W, Wils S, De Schutter E. STEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologies. Bmc Systems Biology. 6: 36. PMID 22574658 DOI: 10.1186/1752-0509-6-36 |
0.53 |
|
2012 |
Chen W, De Schutter E. Improving Data Caching of the STochastic Engine for Pathway Simulation (STEPS) Bmc Neuroscience. 13. DOI: 10.1186/1471-2202-13-S1-P154 |
0.461 |
|
2011 |
Chen W, Maex R, Adams R, Steuber V, Calcraft L, Davey N. Clustering predicts memory performance in networks of spiking and non-spiking neurons. Frontiers in Computational Neuroscience. 5: 14. PMID 21519373 DOI: 10.3389/Fncom.2011.00014 |
0.691 |
|
2011 |
Chen W, Hepburn I, De Schutter E. Improving performance of the STochastic Engine for Pathway Simulation (STEPS) Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P58 |
0.464 |
|
2011 |
Hepburn I, Chen W, De Schutter E. SBML and MathML support for the stochastic reaction-diffusion simulator STEPS Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P57 |
0.514 |
|
2011 |
Song Z, Postma M, Chen W, Coca D, Billings S, Hardie RC, Juusola M, De Schutter E. Does calcium diffusional global feedback leads to slow light adaptation in Drosophila photoreceptors? - A 3D biophysical modelling approach Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P56 |
0.485 |
|
2010 |
Chen W, Hepburn I, De Schutter E. Tetrahedral mesh generation and visualization for stochastic reaction-diffusion simulation Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P70 |
0.504 |
|
2009 |
Chen W, Maex R, Adams R, Steuber V, Calcraft L, Davey N. Connection strategies in associative memory models with spiking and non-spiking neurons Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5495: 42-51. DOI: 10.1007/978-3-642-04921-7_5 |
0.688 |
|
2008 |
Chen W, Adams R, Calcraft L, Steuber V, Davey N. Connectivity graphs and the performance of sparse associative memory models Proceedings of the International Joint Conference On Neural Networks. 2742-2749. DOI: 10.1109/IJCNN.2008.4634183 |
0.558 |
|
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