| Year |
Citation |
Score |
| 2024 |
Korkaya H, Alkan FK, Caglayan A, Alkan H, Benson E, Gunduz Y, Sensoy O, Durdagi S, Zarbaliyev E, Dyson G, Assad H, Shull A, Chadli A, Shi H, Ozturk G. Dual activity of Minnelide chemosensitize basal/triple negative breast cancer stem cells and reprograms immunosuppressive tumor microenvironment. Research Square. PMID 38464167 DOI: 10.21203/rs.3.rs-3959342/v1 |
0.33 |
|
| 2023 |
Poschel DB, Kehinde-Ige M, Klement JD, Yang D, Merting AD, Savage NM, Shi H, Liu K. IRF8 Regulates Intrinsic Ferroptosis through Repressing p53 Expression to Maintain Tumor Cell Sensitivity to Cytotoxic T Lymphocytes. Cells. 12. PMID 36672246 DOI: 10.3390/cells12020310 |
0.349 |
|
| 2022 |
Al Subeh ZY, Poschel DB, Redd PS, Klement JD, Merting AD, Yang D, Mehta M, Shi H, Colson YL, Oberlies NH, Pearce CJ, Colby AH, Grinstaff MW, Liu K. Lipid Nanoparticle Delivery of Fas Plasmid Restores Fas Expression to Suppress Melanoma Growth . Acs Nano. PMID 35939651 DOI: 10.1021/acsnano.2c04420 |
0.304 |
|
| 2022 |
Lu C, Yang D, Klement JD, Colson YL, Oberlies NH, Pearce CJ, Colby AH, Grinstaff MW, Liu Z, Shi H, Ding HF, Liu K. H3K9me3 represses G6PD expression to suppress the pentose phosphate pathway and ROS production to promote human mesothelioma growth. Oncogene. PMID 35351997 DOI: 10.1038/s41388-022-02283-0 |
0.323 |
|
| 2022 |
Merting AD, Poschel DB, Lu C, Klement JD, Yang D, Li H, Shi H, Chapdelaine E, Montgomery M, Redman MT, Savage NM, Nayak-Kapoor A, Liu K. Restoring FAS Expression via Lipid-Encapsulated FAS DNA Nanoparticle Delivery Is Sufficient to Suppress Colon Tumor Growth In Vivo. Cancers. 14. PMID 35053524 DOI: 10.3390/cancers14020361 |
0.303 |
|
| 2020 |
Ding ZC, Aboelella NS, Bryan L, Shi H, Zhou G. The Monocytes That Repopulate in Mice After Cyclophosphamide Treatment Acquire a Neutrophil Precursor Gene Signature and Immunosuppressive Activity. Frontiers in Immunology. 11: 594540. PMID 33569051 DOI: 10.3389/fimmu.2020.594540 |
0.321 |
|
| 2020 |
Smith AD, Lu C, Payne D, Paschall AV, Klement JD, Redd PS, Ibrahim ML, Yang D, Han Q, Liu Z, Shi H, Hartney TJ, Nayak-Kapoor A, Liu K. Autocrine IL6-mediated activation of the STAT3-DNMT axis silences the TNFα-RIP1 necroptosis pathway to sustain survival and accumulation of myeloid-derived suppressor cells. Cancer Research. PMID 32554751 DOI: 10.1158/0008-5472.Can-19-3670 |
0.469 |
|
| 2020 |
Yu M, Guo G, Huang L, Deng L, Chang CS, Achyut BR, Canning M, Xu N, Arbab AS, Bollag RJ, Rodriguez PC, Mellor AL, Shi H, Munn DH, Cui Y. CD73 on cancer-associated fibroblasts enhanced by the A-mediated feedforward circuit enforces an immune checkpoint. Nature Communications. 11: 515. PMID 31980601 DOI: 10.1038/S41467-019-14060-X |
0.312 |
|
| 2019 |
Dunbar F, Xu H, Ryu D, Ghosh S, Shi H, George V. Detection of Differentially Methylated Regions Using Bayes Factor for Ordinal Group Responses. Genes. 10. PMID 31533352 DOI: 10.3390/Genes10090721 |
0.421 |
|
| 2019 |
Dunbar F, Xu H, Ryu D, Ghosh S, Shi H, George V. Computational Methods for Detection of Differentially Methylated Regions Using Kernel Distance and Scan Statistics. Genes. 10. PMID 31013791 DOI: 10.3390/Genes10040298 |
0.439 |
|
| 2019 |
Eisa NH, Jilani Y, Kainth K, Redd P, Lu S, Bougrine O, Abdul Sater H, Patwardhan CA, Shull A, Shi H, Liu K, ElSherbiny NM, Eissa LA, El-Shishtawy MM, Horuzsko A, et al. The co-chaperone UNC45A is essential for the expression of mitotic kinase NEK7 and tumorigenesis. The Journal of Biological Chemistry. PMID 30737284 DOI: 10.1074/Jbc.Ra118.006597 |
0.445 |
|
| 2018 |
Shiao SPK, Xiao H, Dong L, Wang X, Liu K, She J, Shi H. Genome wide DNA differential methylation regions in colorectal cancer patients in relation to blood related family members, obese and non-obese controls - a preliminary report. Oncotarget. 9: 25557-25571. PMID 29876008 DOI: 10.18632/Oncotarget.25374 |
0.394 |
|
| 2018 |
Sharma MD, Rodriguez PC, Koehn BH, Baban B, Cui Y, Guo G, Shimoda M, Pacholczyk R, Shi H, Lee EJ, Xu H, Johnson TS, He Y, Mergoub T, Venable C, et al. Activation of p53 in Immature Myeloid Precursor Cells Controls Differentiation into Ly6c+CD103+ Monocytic Antigen-Presenting Cells in Tumors. Immunity. 48: 91-106.e6. PMID 29343444 DOI: 10.1016/J.Immuni.2017.12.014 |
0.384 |
|
| 2018 |
Wang X, Pan Y, Zhu H, Hao G, Huang Y, Barnes V, Shi H, Snieder H, Pankow J, North K, Grove M, Guan W, Demerath E, Dong Y, Su S. An epigenome-wide study of obesity in African American youth and young adults: novel findings, replication in neutrophils, and relationship with gene expression. Clinical Epigenetics. 10: 3. PMID 29312471 DOI: 10.1186/S13148-017-0435-2 |
0.378 |
|
| 2018 |
Yu M, Guo G, Huang L, Deng L, Bollag R, Mellor A, Shi H, Cui Y. Abstract LB-282: Dynamic regulation of CD73 expression in cancer associated fibroblasts enforces immunosuppression via a feedforward adenosinergic pathway Cancer Research. 78. DOI: 10.1158/1538-7445.Am2018-Lb-282 |
0.355 |
|
| 2017 |
Guo C, Pei L, Xiao X, Wei Q, Chen JK, Ding HF, Huang S, Fan G, Shi H, Dong Z. DNA methylation protects against cisplatin-induced kidney injury by regulating specific genes, including interferon regulatory factor 8. Kidney International. PMID 28709638 DOI: 10.1016/J.Kint.2017.03.038 |
0.34 |
|
| 2017 |
Noonepalle SK, Gu F, Lee EJ, Choi JH, Han Q, Kim J, Ouzounova M, Shull AY, Pei L, Hsu PY, Kohle R, Shi F, Choi J, Chiou K, Huang TH, ... ... Shi H, et al. Promoter Methylation Modulates Indoleamine 2, 3-dioxygenase 1 Induction by Activated T Cells in Human Breast Cancers. Cancer Immunology Research. PMID 28264810 DOI: 10.1158/2326-6066.Cir-16-0182 |
0.439 |
|
| 2017 |
Hu T, Zhu X, Pi W, Yu M, Shi H, Tuan D. Hypermethylated LTR retrotransposon exhibits enhancer activity. Epigenetics. 0. PMID 28165867 DOI: 10.1080/15592294.2017.1289300 |
0.42 |
|
| 2017 |
Hu T, Pi W, Zhu X, Yu M, Ha H, Shi H, Choi JH, Tuan D. Long non-coding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function. Nucleic Acids Research. PMID 28132025 DOI: 10.1093/Nar/Gkx055 |
0.305 |
|
| 2017 |
Wang J, Ye Z, Huang TH, Shi H, Jin VX. Computational Methods and Correlation of Exon-skipping Events with Splicing, Transcription, and Epigenetic Factors. Methods in Molecular Biology (Clifton, N.J.). 1513: 163-170. PMID 27807836 DOI: 10.1007/978-1-4939-6539-7_11 |
0.349 |
|
| 2017 |
Gu F, Noonepalle S, Lee E, Choi J, Shull A, Pei L, Sreekumar A, Ambs S, Shi H. Abstract P6-02-08: Modulation of indoleamine 2, 3-dioxygenase (IDO1) expression in breast cancer cells by activated CD8+ T cells is controlled by DNA promoter methylation Cancer Research. 77. DOI: 10.1158/1538-7445.Sabcs16-P6-02-08 |
0.422 |
|
| 2016 |
Piao Y, Lee SK, Lee EJ, Robertson KD, Shi H, Ryu KH, Choi JH. CAME: Identification of Chromatin Accessibility from Nucleosome Occupancy and Methylome Sequencing. Bioinformatics (Oxford, England). PMID 28035030 DOI: 10.1093/Bioinformatics/Btw785 |
0.386 |
|
| 2016 |
Kushwaha G, Dozmorov M, Wren JD, Qiu J, Shi H, Xu D. Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia. Human Genomics. 10: 18. PMID 27461342 DOI: 10.1186/S40246-016-0071-5 |
0.445 |
|
| 2016 |
Wu J, Xu X, Lee EJ, Shull AY, Pei L, Awan F, Wang X, Choi JH, Deng L, Xin HB, Zhong W, Liang J, Miao Y, Wu Y, Fan L, ... ... Shi H, et al. Phenotypic alteration of CD8+ T cells in chronic lymphocytic leukemia is associated with epigenetic reprogramming. Oncotarget. PMID 27302925 DOI: 10.18632/Oncotarget.9941 |
0.369 |
|
| 2016 |
Pathania R, Ramachandran S, Mariappan G, Thakur P, Shi H, Choi JH, Manicassamy S, Kolhe R, Prasad PD, Sharma S, Lokeshwar BL, Ganapathy V, Thangaraju M. Combined inhibition of DNMT and HDAC blocks the tumorigenicity of cancer stem-like cells and attenuates mammary tumor growth. Cancer Research. PMID 27197203 DOI: 10.1158/0008-5472.Can-15-2249 |
0.474 |
|
| 2016 |
Ryu D, Xu H, George V, Su S, Wang X, Shi H, Podolsky RH. Differential methylation tests of regulatory regions. Statistical Applications in Genetics and Molecular Biology. PMID 26982617 DOI: 10.1515/Sagmb-2015-0037 |
0.361 |
|
| 2016 |
Wang Y, Jadhav RR, Liu J, Wilson D, Chen Y, Thompson IM, Troyer DA, Hernandez J, Shi H, Leach RJ, Huang TH, Jin VX. Roles of Distal and Genic Methylation in the Development of Prostate Tumorigenesis Revealed by Genome-wide DNA Methylation Analysis. Scientific Reports. 6: 22051. PMID 26924343 DOI: 10.1038/Srep22051 |
0.463 |
|
| 2016 |
Wang Y, Liu T, Xu D, Shi H, Zhang C, Mo YY, Wang Z. Predicting DNA Methylation State of CpG Dinucleotide Using Genome Topological Features and Deep Networks. Scientific Reports. 6: 19598. PMID 26797014 DOI: 10.1038/Srep19598 |
0.372 |
|
| 2016 |
Shull AY, Luo J, Pei L, Lee E, Liu J, Choi J, Awan FT, Shi H. DNA Hypomethylation within B-Cell Enhancers and Super Enhancers Reveal a Dependency on Immune and Metabolic Mechanisms in Chronic Lymphocytic Leukemia Blood. 128: 1049-1049. DOI: 10.1182/Blood.V128.22.1049.1049 |
0.47 |
|
| 2016 |
Shull AY, Choi J, Bauer J, Pei L, Awan FT, Shi H. Abstract 4697: The covalent CDK7 inhibitor THZ1 can counteract apoptotic resistance and suppress the transcription of genes attributed to chronic lymphocytic leukemia malignancy Cancer Research. 76: 4697-4697. DOI: 10.1158/1538-7445.Am2016-4697 |
0.415 |
|
| 2015 |
Ganguly S, Home T, Yacoub A, Kambhampati S, Shi H, Dandawate P, Padhye S, Saluja AK, McGuirk J, Rao R. Targeting HSF1 disrupts HSP90 chaperone function in chronic lymphocytic leukemia. Oncotarget. PMID 26397138 DOI: 10.18632/Oncotarget.5167 |
0.308 |
|
| 2015 |
Lee EJ, Rath P, Liu J, Ryu D, Pei L, Noonepalle SK, Shull AY, Feng Q, Litofsky NS, Miller DC, Anthony DC, Kirk MD, Laterra J, Deng L, Xin HB, ... ... Shi H, et al. Identification of Global DNA Methylation Signatures in Glioblastoma-Derived Cancer Stem Cells. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 42: 355-71. PMID 26233891 DOI: 10.1016/J.Jgg.2015.06.003 |
0.777 |
|
| 2015 |
Burmeister DW, Smith EH, Cristel RT, McKay SD, Shi H, Arthur GL, Davis JW, Taylor KH. The expression of RUNDC3B is associated with promoter methylation in lymphoid malignancies. Hematological Oncology. PMID 26011749 DOI: 10.1002/Hon.2238 |
0.479 |
|
| 2015 |
Shull AY, Noonepalle SK, Awan FT, Liu J, Pei L, Bollag RJ, Salman H, Ding Z, Shi H. RPPA-based protein profiling reveals eIF4G overexpression and 4E-BP1 serine 65 phosphorylation as molecular events that correspond with a pro-survival phenotype in chronic lymphocytic leukemia. Oncotarget. 6: 14632-45. PMID 25999352 DOI: 10.18632/Oncotarget.4104 |
0.306 |
|
| 2015 |
Pathania R, Ramachandran S, Elangovan S, Padia R, Yang P, Cinghu S, Veeranan-Karmegam R, Arjunan P, Gnana-Prakasam JP, Sadanand F, Pei L, Chang CS, Choi JH, Shi H, Manicassamy S, et al. DNMT1 is essential for mammary and cancer stem cell maintenance and tumorigenesis. Nature Communications. 6: 6910. PMID 25908435 DOI: 10.1038/Ncomms7910 |
0.478 |
|
| 2015 |
Shull AY, Noonepalle SK, Lee EJ, Choi JH, Shi H. Sequencing the cancer methylome. Methods in Molecular Biology (Clifton, N.J.). 1238: 627-51. PMID 25421684 DOI: 10.1007/978-1-4939-1804-1_33 |
0.443 |
|
| 2015 |
Rao R, Home T, Yacoub A, Shi H, Saluja A, McGuirk J, Ganguly S. Heat Shock Factor 1 Promotes NF-Kb and B-Cell Signaling in a Preclinical Model of Chronic Lymphocytic Leukemia Blood. 126: 5297-5297. DOI: 10.1182/Blood.V126.23.5297.5297 |
0.338 |
|
| 2015 |
Noonepalle SKR, Lee EJ, Ouzounova M, Kim J, Choi J, Shull A, Pei L, Kolhe R, Hsu P, Putluri N, Huang TH, Sreekumar A, Korkaya H, Munn D, Shi H. Abstract 4060: Promoter methylation regulates interferon-γ induced indoleamine 2,3-dioxygenase expression in breast cancer Cancer Research. 75: 4060-4060. DOI: 10.1158/1538-7445.Am2015-4060 |
0.492 |
|
| 2015 |
Shull AY, Choi J, Buckley B, Pei L, Awan FT, Shi H. Abstract 2191: Transcriptome analysis demonstrates the ability of the bromodomain inhibitor JQ1 to attenuate expression of common oncogenes heterogeneously expressed among chronic lymphocytic leukemia subsets Cancer Research. 75: 2191-2191. DOI: 10.1158/1538-7445.Am2015-2191 |
0.422 |
|
| 2015 |
Ouzounova M, Lee E, Novakovic E, Noonepalle SK, Piranlioglu R, Shi H, Wicha M, Korkaya H. Abstract 1984: SOCS3 regulates IDO proteasomal degradation and inflammatory signaling in triple negative breast cancer Cancer Research. 75: 1984-1984. DOI: 10.1158/1538-7445.Am2015-1984 |
0.36 |
|
| 2014 |
Hong S, Noh H, Teng Y, Shao J, Rehmani H, Ding HF, Dong Z, Su SB, Shi H, Kim J, Huang S. SHOX2 is a direct miR-375 target and a novel epithelial-to-mesenchymal transition inducer in breast cancer cells. Neoplasia (New York, N.Y.). 16: 279-90.e1-5. PMID 24746361 DOI: 10.1016/J.Neo.2014.03.010 |
0.317 |
|
| 2014 |
Wu J, Xu X, Pei L, Lee E, Shull A, Awan F, Wang X, Fan L, Jianyong L, Wei X, Shi H. Genome-Wide DNA Methylation Analysis Identifies Aberrant Epigenetic Changes in CD8+ T Cells from Chronic Lymphocytic Leukemia Patients Blood. 124: 3552-3552. DOI: 10.1182/Blood.V124.21.3552.3552 |
0.425 |
|
| 2014 |
Shull AY, Luo J, Choi J, Pei L, Awan FT, Lee E, Liu J, Buckhaults PJ, Yan X, Chiorazzi N, Shi H. Abstract 5182: Identifying differential gene expression and splicing events in chronic lymphocytic leukemia patients through whole transcriptome profiling Cancer Research. 74: 5182-5182. DOI: 10.1158/1538-7445.Am2014-5182 |
0.416 |
|
| 2014 |
Noonepalle SKR, Shull A, Awan FT, Pei L, Ding Z, Shi H. Abstract 5180: Profiling signaling pathways in chronic lymphocytic leukemia using reverse phase protein array Cancer Research. 74: 5180-5180. DOI: 10.1158/1538-7445.Am2014-5180 |
0.343 |
|
| 2014 |
Shimbo T, Du Y, Grimm SA, Dhasarathy A, Mav D, Shah RR, Shi H, Wade PA. Abstract 405: Mbd3 localizes at promoters, gene bodies and enhancers of active genes Cancer Research. 74: 405-405. DOI: 10.1158/1538-7445.Am2014-405 |
0.447 |
|
| 2014 |
Liu Z, Zhang J, Gao Y, Pei L, Hattori N, Zhu B, Ji J, Yuasa Y, Kim W, Ushijima T, Shi H, Deng D. Abstract 4012: Large-scale characterization of DNA methylation changes in human gastric carcinomas with and without metastasis Cancer Research. 74: 4012-4012. DOI: 10.1158/1538-7445.Am2014-4012 |
0.454 |
|
| 2014 |
Lee EJ, Rath P, Liu J, Ryu D, Free A, Pei L, Anthony DC, Sharma S, Kirk MD, Laterra JJ, Ryu DH, Choi J, Shi H, Miller DC, Litofsky NS, et al. Abstract 1379: Identification of global DNA methylation signatures in glioblastoma-derived cancer stem cells Cancer Research. 74: 1379-1379. DOI: 10.1158/1538-7445.Am2014-1379 |
0.781 |
|
| 2013 |
Shimbo T, Du Y, Grimm SA, Dhasarathy A, Mav D, Shah RR, Shi H, Wade PA. MBD3 localizes at promoters, gene bodies and enhancers of active genes. Plos Genetics. 9: e1004028. PMID 24385926 DOI: 10.1371/Journal.Pgen.1004028 |
0.323 |
|
| 2013 |
Wang X, Choi JH, Ding J, Yang L, Ngoka LC, Lee EJ, Zha Y, Mao L, Jin B, Ren M, Cowell J, Huang S, Shi H, Cui H, Ding HF. HOXC9 directly regulates distinct sets of genes to coordinate diverse cellular processes during neuronal differentiation. Bmc Genomics. 14: 830. PMID 24274069 DOI: 10.1186/1471-2164-14-830 |
0.39 |
|
| 2013 |
Sharma MD, Huang L, Choi JH, Lee EJ, Wilson JM, Lemos H, Pan F, Blazar BR, Pardoll DM, Mellor AL, Shi H, Munn DH. An inherently bifunctional subset of Foxp3+ T helper cells is controlled by the transcription factor eos. Immunity. 38: 998-1012. PMID 23684987 DOI: 10.1016/J.Immuni.2013.01.013 |
0.386 |
|
| 2013 |
Xu X, Su S, Barnes VA, De Miguel C, Pollock J, Ownby D, Shi H, Zhu H, Snieder H, Wang X. A genome-wide methylation study on obesity: differential variability and differential methylation. Epigenetics. 8: 522-33. PMID 23644594 DOI: 10.4161/Epi.24506 |
0.386 |
|
| 2013 |
Xu H, Podolsky RH, Ryu D, Wang X, Su S, Shi H, George V. A method to detect differentially methylated loci with next-generation sequencing. Genetic Epidemiology. 37: 377-82. PMID 23554163 DOI: 10.1002/Gepi.21726 |
0.409 |
|
| 2013 |
Taylor KH, Briley A, Wang Z, Cheng J, Shi H, Caldwell CW. Aberrant epigenetic gene regulation in lymphoid malignancies. Seminars in Hematology. 50: 38-47. PMID 23507482 DOI: 10.1053/J.Seminhematol.2013.01.003 |
0.476 |
|
| 2013 |
Wang X, Falkner B, Zhu H, Shi H, Su S, Xu X, Sharma AK, Dong Y, Treiber F, Gutin B, Harshfield G, Snieder H. A genome-wide methylation study on essential hypertension in young African American males. Plos One. 8: e53938. PMID 23325143 DOI: 10.1371/Journal.Pone.0053938 |
0.363 |
|
| 2013 |
Zhu H, Wang X, Shi H, Su S, Harshfield GA, Gutin B, Snieder H, Dong Y. A genome-wide methylation study of severe vitamin D deficiency in African American adolescents. The Journal of Pediatrics. 162: 1004-9.e1. PMID 23219444 DOI: 10.1016/J.Jpeds.2012.10.059 |
0.334 |
|
| 2013 |
Lee EJ, Luo J, Wilson JM, Shi H. Analyzing the cancer methylome through targeted bisulfite sequencing. Cancer Letters. 340: 171-8. PMID 23200671 DOI: 10.1016/J.Canlet.2012.10.040 |
0.337 |
|
| 2013 |
Shimbo T, Du Y, Grimm S, Dhasarathy A, Mav D, Shah R, Shi H, Wade PA. Abstract B63: MBD3 accumulates at promoters and enhancers of active genes Cancer Research. 73. DOI: 10.1158/1538-7445.Cec13-B63 |
0.435 |
|
| 2012 |
Pei L, Choi JH, Liu J, Lee EJ, McCarthy B, Wilson JM, Speir E, Awan F, Tae H, Arthur G, Schnabel JL, Taylor KH, Wang X, Xu D, Ding HF, ... ... Shi H, et al. Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia. Epigenetics : Official Journal of the Dna Methylation Society. 7: 567-78. PMID 22534504 DOI: 10.4161/Epi.20237 |
0.499 |
|
| 2012 |
Zimmerman MA, Singh N, Martin PM, Thangaraju M, Ganapathy V, Waller JL, Shi H, Robertson KD, Munn DH, Liu K. Butyrate suppresses colonic inflammation through HDAC1-dependent Fas upregulation and Fas-mediated apoptosis of T cells. American Journal of Physiology. Gastrointestinal and Liver Physiology. 302: G1405-15. PMID 22517765 DOI: 10.1152/Ajpgi.00543.2011 |
0.352 |
|
| 2012 |
Luo J, Choi J, Pei L, Awan F, Lee E, Liu J, Shull A, McCarthy BA, Wilson JM, Taylor KH, Wang X, Buckhaults PJ, Munn DH, Caldwell CW, Yan X, ... ... Shi H, et al. Genome-Wide DNA Methylation Landscape Defines IGHV Mutated and Unmutated B Cell Chronic Lymphocytic Leukemias Blood. 120: 526-526. DOI: 10.1182/Blood.V120.21.526.526 |
0.494 |
|
| 2012 |
Lee EJ, Liu J, Speir E, Wilson J, Joshi H, Pei L, Luo J, Awan F, Munn D, Yan X, Chiorazzi N, Shi H. DNA Hypomethylation Leads to Aberrant Expression of PD-1 in Chronic Lymphocytic Leukemia Blood. 120: 3504-3504. DOI: 10.1182/Blood.V120.21.3504.3504 |
0.343 |
|
| 2011 |
Putluri N, Shojaie A, Vasu VT, Vareed SK, Nalluri S, Putluri V, Thangjam GS, Panzitt K, Tallman CT, Butler C, Sana TR, Fischer SM, Sica G, Brat DJ, Shi H, et al. Metabolomic profiling reveals potential markers and bioprocesses altered in bladder cancer progression. Cancer Research. 71: 7376-86. PMID 21990318 DOI: 10.1158/0008-5472.Can-11-1154 |
0.381 |
|
| 2011 |
Lee EJ, Pei L, Srivastava G, Joshi T, Kushwaha G, Choi JH, Robertson KD, Wang X, Colbourne JK, Zhang L, Schroth GP, Xu D, Zhang K, Shi H. Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Research. 39: e127. PMID 21785137 DOI: 10.1093/Nar/Gkr598 |
0.42 |
|
| 2011 |
Rath P, Miller DC, Litofsky NS, Anthony DC, Feng Q, Franklin C, Pei L, Free A, Liu J, Ren M, Kirk MD, Shi H. Isolation and characterization of a population of stem-like progenitor cells from an atypical meningioma. Experimental and Molecular Pathology. 90: 179-88. PMID 21168406 DOI: 10.1016/J.Yexmp.2010.12.003 |
0.75 |
|
| 2011 |
Choi J, Li Y, Guo J, Pei L, Rauch TA, Kramer RS, Macmil SL, Wiley GB, Bennett LB, Schnabel JL, Taylor KH, Kim S, Xu D, Sreekumar A, Pfeifer GP, ... ... Shi H, et al. Correction: Genome-Wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-Enriched Bisulfite Sequencing Plos One. 6. DOI: 10.1371/annotation/ef58e5ee-1aaf-47b8-a0c5-1f1bf6886a8c |
0.311 |
|
| 2011 |
Pei L, Choi J, Liu J, Arthur G, Schnabel JL, Taylor KH, Caldwell CW, Wang X, Shi H. Abstract 4791: Genome-wide DNA methylation maps in chronic lymphocytic leukemia cells determined by next-generation sequencing Cellular and Molecular Biology. 71: 4791-4791. DOI: 10.1158/1538-7445.Am2011-4791 |
0.393 |
|
| 2011 |
Lee EJ, Pei L, Srivastava G, Kushwaha G, Trupti J, Choi J, Wang X, Xu D, Zhang K, Shi H. Abstract 3003: Targeted bisulfite sequencing of CpG island DNA by solution hybrid selection and next-generation sequencing Cancer Research. 71: 3003-3003. DOI: 10.1158/1538-7445.Am2011-3003 |
0.411 |
|
| 2010 |
Taylor KH, Shi H, Caldwell CW. Next generation sequencing: advances in characterizing the methylome. Genes. 1: 143-65. PMID 24710039 DOI: 10.3390/Genes1020143 |
0.351 |
|
| 2010 |
Wang X, Zhu H, Snieder H, Su S, Munn D, Harshfield G, Maria BL, Dong Y, Treiber F, Gutin B, Shi H. Obesity related methylation changes in DNA of peripheral blood leukocytes. Bmc Medicine. 8: 87. PMID 21176133 DOI: 10.1186/1741-7015-8-87 |
0.317 |
|
| 2010 |
Choi JH, Li Y, Guo J, Pei L, Rauch TA, Kramer RS, Macmil SL, Wiley GB, Bennett LB, Schnabel JL, Taylor KH, Kim S, Xu D, Sreekumar A, Pfeifer GP, ... ... Shi H, et al. Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing. Plos One. 5. PMID 20927367 DOI: 10.1371/Journal.Pone.0013020 |
0.465 |
|
| 2010 |
Suter JD, Howard DJ, Shi H, Caldwell CW, Fan X. Label-free DNA methylation analysis using opto-fluidic ring resonators. Biosensors & Bioelectronics. 26: 1016-20. PMID 20846848 DOI: 10.1016/J.Bios.2010.08.050 |
0.395 |
|
| 2010 |
Pierret C, Morrison JA, Rath P, Zigler RE, Engel LA, Fairchild CL, Shi H, Maruniak JA, Kirk MD. Developmental cues and persistent neurogenic potential within an in vitro neural niche. Bmc Developmental Biology. 10: 5. PMID 20074373 DOI: 10.1186/1471-213X-10-5 |
0.714 |
|
| 2010 |
Putluri N, Vasu VT, Shojaie A, Thangjam GS, Vareed SK, Putluri V, Butler C, Giri JG, Park MA, Ponnala R, Sana TR, Fischer SM, Sica G, Brat DJ, Shi H, et al. Abstract A52: Metabolomic profiling reveals impaired xenobiotic metabolism in bladder cancer Cancer Epidemiology, Biomarkers & Prevention. 19. DOI: 10.1158/1055-9965.Disp-10-A52 |
0.383 |
|
| 2009 |
Rahmatpanah FB, Carstens S, Hooshmand SI, Welsh EC, Sjahputera O, Taylor KH, Bennett LB, Shi H, Davis JW, Arthur GL, Shanafelt TD, Kay NE, Wooldridge JE, Caldwell CW. Large-scale analysis of DNA methylation in chronic lymphocytic leukemia. Epigenomics. 1: 39-61. PMID 20495622 DOI: 10.2217/Epi.09.10 |
0.451 |
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| 2009 |
Suter JD, Howard DJ, Shi H, Caldwell CW, Fan X. Label-free analysis of DNA methylation using optofluidic ring resonators. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 2760-2. PMID 19964593 DOI: 10.1109/IEMBS.2009.5333866 |
0.301 |
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| 2009 |
Fiskus W, Wang Y, Sreekumar A, Buckley KM, Shi H, Jillella A, Ustun C, Rao R, Fernandez P, Chen J, Balusu R, Koul S, Atadja P, Marquez VE, Bhalla KN. Combined epigenetic therapy with the histone methyltransferase EZH2 inhibitor 3-deazaneplanocin A and the histone deacetylase inhibitor panobinostat against human AML cells. Blood. 114: 2733-43. PMID 19638619 DOI: 10.1182/Blood-2009-03-213496 |
0.39 |
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| 2009 |
Bennett LB, Schnabel JL, Kelchen JM, Taylor KH, Guo J, Arthur GL, Papageorgio CN, Shi H, Caldwell CW. DNA hypermethylation accompanied by transcriptional repression in follicular lymphoma. Genes, Chromosomes & Cancer. 48: 828-41. PMID 19530241 DOI: 10.1002/Gcc.20687 |
0.496 |
|
| 2009 |
Rath P, Shi H, Maruniak JA, Litofsky NS, Maria BL, Kirk MD. Stem cells as vectors to deliver HSV/tk gene therapy for malignant gliomas. Current Stem Cell Research & Therapy. 4: 44-9. PMID 19149629 DOI: 10.2174/157488809787169138 |
0.74 |
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| 2009 |
Suter JD, Howard DJ, Caldwell CW, Shi H, Fan X. Label-free DNA methylation analysis using the optofluidic ring resonator sensor Proceedings of Spie - the International Society For Optical Engineering. 7322. DOI: 10.1117/12.818562 |
0.391 |
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| 2008 |
Srivastava GP, Guo J, Shi H, Xu D. PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands. Bioinformatics (Oxford, England). 24: 1837-42. PMID 18579568 DOI: 10.1093/Bioinformatics/Btn320 |
0.38 |
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| 2008 |
Kim S, Li M, Paik H, Nephew K, Shi H, Kramer R, Xu D, Huang TH. Predicting DNA methylation susceptibility using CpG flanking sequences. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 315-26. PMID 18229696 DOI: 10.1142/9789812776136_0031 |
0.344 |
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| 2008 |
Wang MX, Zhao X, Nalluri S, Wang H, Taylor KH, Shi H, Caldwell CW. A Sensitive Molecular Method for Detection of Disseminating Hematopoietic Tumor Cells by Using Specific Epigenetic DNA Methylation Biomarkers Blood. 112: 4850-4850. DOI: 10.1182/Blood.V112.11.4850.4850 |
0.513 |
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| 2007 |
Shi H, Wang MX, Caldwell CW. CpG islands: their potential as biomarkers for cancer. Expert Review of Molecular Diagnostics. 7: 519-31. PMID 17892361 DOI: 10.1586/14737159.7.5.519 |
0.445 |
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| 2007 |
Taylor KH, Kramer RS, Davis JW, Guo J, Duff DJ, Xu D, Caldwell CW, Shi H. Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Research. 67: 8511-8. PMID 17875690 DOI: 10.1158/0008-5472.Can-07-1016 |
0.426 |
|
| 2007 |
Sjahputera O, Keller JM, Davis JW, Taylor KH, Rahmatpanah F, Shi H, Anderson DT, Blisard SN, Luke RH, Popescu M, Arthur GC, Caldwell CW. Relational analysis of CpG islands methylation and gene expression in human lymphomas using possibilistic C-means clustering and modified cluster fuzzy density. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 176-89. PMID 17473312 DOI: 10.1109/Tcbb.2007.070205 |
0.425 |
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| 2007 |
Taylor KH, Pena-Hernandez KE, Davis JW, Arthur GL, Duff DJ, Shi H, Rahmatpanah FB, Sjahputera O, Caldwell CW. Large-scale CpG methylation analysis identifies novel candidate genes and reveals methylation hotspots in acute lymphoblastic leukemia. Cancer Research. 67: 2617-25. PMID 17363581 DOI: 10.1158/0008-5472.Can-06-3993 |
0.49 |
|
| 2007 |
Shi H, Guo J, Duff DJ, Rahmatpanah F, Chitima-Matsiga R, Al-Kuhlani M, Taylor KH, Sjahputera O, Andreski M, Wooldridge JE, Caldwell CW. Discovery of novel epigenetic markers in non-Hodgkin's lymphoma. Carcinogenesis. 28: 60-70. PMID 16774933 DOI: 10.1093/Carcin/Bgl092 |
0.515 |
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| 2006 |
Rahmatpanah FB, Carstens S, Guo J, Sjahputera O, Taylor KH, Duff D, Shi H, Davis JW, Hooshmand SI, Chitma-Matsiga R, Caldwell CW. Differential DNA methylation patterns of small B-cell lymphoma subclasses with different clinical behavior. Leukemia. 20: 1855-62. PMID 16900213 DOI: 10.1038/Sj.Leu.2404345 |
0.487 |
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| 2006 |
Taylor KH, Liu J, Guo J, Davis JW, Shi H, Caldwell CW. Promoter DNA methylation of CD10 in lymphoid malignancies. Leukemia. 20: 1910-2. PMID 16900210 DOI: 10.1038/Sj.Leu.2404353 |
0.417 |
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| 2005 |
Guo J, Burger M, Nimmrich I, Maier S, Becker E, Genc B, Duff D, Rahmatpanah F, Chitma-Matsiga R, Shi H, Berlin K, Huang TH, Caldwell CW. Differential DNA methylation of gene promoters in small B-cell lymphomas. American Journal of Clinical Pathology. 124: 430-9. PMID 16191512 DOI: 10.1309/Lcgnv77J464Lnfd6 |
0.489 |
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| 2005 |
Li L, Shi H, Yiannoutsos C, Huang TH, Nephew KP. Epigenetic hypothesis tests for methylation and acetylation in a triple microarray system. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 370-90. PMID 15857248 DOI: 10.1089/Cmb.2005.12.370 |
0.451 |
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| 2005 |
Wang MX, Duff D, Shi H, Taylor KH, Gruner BA, Caldwell CW. Detection of Minimal Residual Disease in Precursor B Lymphoblastic Leukemia (B-ALL) Patients by a Novel Epigenetic DNA Methylation Biomarker. Blood. 106: 4524-4524. DOI: 10.1182/Blood.V106.11.4524.4524 |
0.458 |
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| 2003 |
Yan PS, Shi H, Rahmatpanah F, Hsiau TH, Hsiau AH, Leu YW, Liu JC, Huang TH. Differential distribution of DNA methylation within the RASSF1A CpG island in breast cancer. Cancer Research. 63: 6178-86. PMID 14559801 |
0.385 |
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| 2003 |
Leu YW, Rahmatpanah F, Shi H, Wei SH, Liu JC, Yan PS, Huang TH. Double RNA interference of DNMT3b and DNMT1 enhances DNA demethylation and gene reactivation. Cancer Research. 63: 6110-5. PMID 14559786 |
0.369 |
|
| 2003 |
Yang H, Chen CM, Yan P, Huang THM, Shi H, Burger M, Nimmrich I, Maier S, Berlin K, Caldwell CW. The androgen receptor gene is preferentially hypermethylated in follicular non-Hodgkin's lymphomas Clinical Cancer Research. 9: 4034-4042. PMID 14519624 |
0.364 |
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| 2003 |
Chen CM, Chen HL, Hsiau TH, Hsiau AH, Shi H, Brock GJ, Wei SH, Caldwell CW, Yan PS, Huang TH. Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes. The American Journal of Pathology. 163: 37-45. PMID 12819009 DOI: 10.1016/S0002-9440(10)63628-0 |
0.47 |
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| 2003 |
Shi H, Wei SH, Leu YW, Rahmatpanah F, Liu JC, Yan PS, Nephew KP, Huang TH. Triple analysis of the cancer epigenome: an integrated microarray system for assessing gene expression, DNA methylation, and histone acetylation. Cancer Research. 63: 2164-71. PMID 12727835 |
0.363 |
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| 2003 |
Shi H, Maier S, Nimmrich I, Yan PS, Caldwell CW, Olek A, Huang TH. Oligonucleotide-based microarray for DNA methylation analysis: principles and applications. Journal of Cellular Biochemistry. 88: 138-43. PMID 12461783 DOI: 10.1002/Jcb.10313 |
0.52 |
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| 2002 |
Yan PS, Chen CM, Shi H, Rahmatpanah F, Wei SH, Huang TH. Applications of CpG island microarrays for high-throughput analysis of DNA methylation. The Journal of Nutrition. 132: 2430S-2434S. PMID 12163706 DOI: 10.1093/Jn/132.8.2430S |
0.45 |
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| 2002 |
Wei SH, Chen CM, Strathdee G, Harnsomburana J, Shyu CR, Rahmatpanah F, Shi H, Ng SW, Yan PS, Nephew KP, Brown R, Huang TH. Methylation microarray analysis of late-stage ovarian carcinomas distinguishes progression-free survival in patients and identifies candidate epigenetic markers. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 8: 2246-52. PMID 12114427 |
0.302 |
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| 2002 |
Shi H, Yan PS, Chen CM, Rahmatpanah F, Lofton-Day C, Caldwell CW, Huang TH. Expressed CpG island sequence tag microarray for dual screening of DNA hypermethylation and gene silencing in cancer cells. Cancer Research. 62: 3214-20. PMID 12036936 |
0.401 |
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| 2002 |
Gitan RS, Shi H, Chen CM, Yan PS, Huang TH. Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis. Genome Research. 12: 158-64. PMID 11779841 DOI: 10.1101/Gr.202801 |
0.432 |
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| 2001 |
Huang TH, Shi H, Rahmatpanah F, Yan P. Dissecting complex genetic and epigenetic alterations in cancer genomes using CpG island microarrays Nature Genetics. 27: 60-61. DOI: 10.1038/87126 |
0.339 |
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