| Year |
Citation |
Score |
| 2023 |
Scire J, Huisman JS, Grosu A, Angst DC, Lison A, Li J, Maathuis MH, Bonhoeffer S, Stadler T. estimateR: an R package to estimate and monitor the effective reproductive number. Bmc Bioinformatics. 24: 310. PMID 37568078 DOI: 10.1186/s12859-023-05428-4 |
0.746 |
|
| 2022 |
Vasse M, Bonhoeffer S, Frenoy A. Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments. Isme Communications. 2: 80. PMID 37938266 DOI: 10.1038/s43705-022-00157-w |
0.778 |
|
| 2022 |
Huisman JS, Vaughan TG, Egli A, Tschudin-Sutter S, Stadler T, Bonhoeffer S. The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogenies. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20210245. PMID 35989605 DOI: 10.1098/rstb.2021.0245 |
0.513 |
|
| 2022 |
Huisman JS, Scire J, Angst DC, Li J, Neher RA, Maathuis MH, Bonhoeffer S, Stadler T. Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2. Elife. 11. PMID 35938911 DOI: 10.7554/eLife.71345 |
0.5 |
|
| 2021 |
Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday JD, Bosse NI, Sherrat K, ... ... Bonhoeffer S, et al. Correction: Practical considerations for measuring the effective reproductive number, Rt. Plos Computational Biology. 17: e1009679. PMID 34879070 DOI: 10.1371/journal.pcbi.1009679 |
0.459 |
|
| 2021 |
Angst DC, Tepekule B, Sun L, Bogos B, Bonhoeffer S. Comparing treatment strategies to reduce antibiotic resistance in an in vitro epidemiological setting. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33766914 DOI: 10.1073/pnas.2023467118 |
0.451 |
|
| 2020 |
Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday JD, Bosse NI, Sherrat K, ... ... Bonhoeffer S, et al. Practical considerations for measuring the effective reproductive number, Rt. Plos Computational Biology. 16: e1008409. PMID 33301457 DOI: 10.1371/journal.pcbi.1008409 |
0.525 |
|
| 2020 |
Benz F, Huisman JS, Bakkeren E, Herter JA, Stadler T, Ackermann M, Diard M, Egli A, Hall AR, Hardt WD, Bonhoeffer S. Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo. The Isme Journal. PMID 33149210 DOI: 10.1038/s41396-020-00819-4 |
0.74 |
|
| 2020 |
Gostic KM, McGough L, Baskerville E, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday J, Bosse N, Sherratt K, ... ... Bonhoeffer S, et al. Practical considerations for measuring the effective reproductive number, Rt. Medrxiv : the Preprint Server For Health Sciences. PMID 32607522 DOI: 10.1101/2020.06.18.20134858 |
0.51 |
|
| 2019 |
Tepekule B, Abel Zur Wiesch P, Kouyos RD, Bonhoeffer S. Quantifying the impact of treatment history on plasmid-mediated resistance evolution in human gut microbiota. Proceedings of the National Academy of Sciences of the United States of America. PMID 31666328 DOI: 10.1073/Pnas.1912188116 |
0.344 |
|
| 2019 |
Sun L, Ashcroft P, Ackermann M, Bonhoeffer S. Stochastic gene expression influences the selection of antibiotic resistance mutations. Molecular Biology and Evolution. PMID 31504754 DOI: 10.1093/Molbev/Msz199 |
0.756 |
|
| 2019 |
Bakkeren E, Huisman JS, Fattinger SA, Hausmann A, Furter M, Egli A, Slack E, Sellin ME, Bonhoeffer S, Regoes RR, Diard M, Hardt WD. Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut. Nature. 573: 276-280. PMID 31485077 DOI: 10.1038/S41586-019-1521-8 |
0.324 |
|
| 2018 |
Frenoy A, Bonhoeffer S. Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria. Plos Biology. 16: e2005056. PMID 29750784 DOI: 10.1371/Journal.Pbio.2005056 |
0.773 |
|
| 2018 |
Hozé N, Bonhoeffer S, Regoes R. Assessing the public health impact of tolerance-based therapies with mathematical models. Plos Computational Biology. 14: e1006119. PMID 29727455 DOI: 10.1371/Journal.Pcbi.1006119 |
0.316 |
|
| 2018 |
Sun L, Alexander HK, Bogos B, Kiviet DJ, Ackermann M, Bonhoeffer S. Effective polyploidy causes phenotypic delay and influences bacterial evolvability. Plos Biology. 16: e2004644. PMID 29470493 DOI: 10.1371/Journal.Pbio.2004644 |
0.759 |
|
| 2018 |
Kühnert D, Kouyos R, Shirreff G, Pečerska J, Scherrer AU, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Stadler T, Bonhoeffer S. Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. Plos Pathogens. 14: e1006895. PMID 29462208 DOI: 10.1371/Journal.Ppat.1006895 |
0.627 |
|
| 2017 |
Bertels F, Marzel A, Leventhal G, Mitov V, Fellay J, Günthard HF, Böni J, Yerly S, Klimkait T, Aubert V, Battegay M, Rauch A, Cavassini M, Calmy A, Bernasconi E, ... ... Bonhoeffer S, et al. Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T Cell Decline and Per-Parasite Pathogenicity. Molecular Biology and Evolution. PMID 29029206 DOI: 10.1093/Molbev/Msx246 |
0.343 |
|
| 2017 |
Uecker H, Bonhoeffer S. Modeling antimicrobial cycling and mixing: Differences arising from an individual-based versus a population-based perspective. Mathematical Biosciences. PMID 28962827 DOI: 10.1016/J.Mbs.2017.09.002 |
0.323 |
|
| 2017 |
Allen RC, Engelstädter J, Bonhoeffer S, McDonald BA, Hall AR. Reversing resistance: different routes and common themes across pathogens. Proceedings. Biological Sciences. 284. PMID 28954914 DOI: 10.1098/Rspb.2017.1619 |
0.345 |
|
| 2017 |
Tepekule B, Uecker H, Derungs I, Frenoy A, Bonhoeffer S. Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies. Plos Computational Biology. 13: e1005745. PMID 28915236 DOI: 10.1371/Journal.Pcbi.1005745 |
0.776 |
|
| 2017 |
Liechti JI, Leventhal GE, Bonhoeffer S. Host population structure impedes reversion to drug sensitivity after discontinuation of treatment. Plos Computational Biology. 13: e1005704. PMID 28827796 DOI: 10.1371/Journal.Pcbi.1005704 |
0.381 |
|
| 2017 |
Shilaih M, Angst DC, Marzel A, Bonhoeffer S, Günthard HF, Kouyos RD. Antibacterial effects of antiretrovirals, potential implications for microbiome studies in HIV. Antiviral Therapy. PMID 28497768 DOI: 10.3851/Imp3173 |
0.328 |
|
| 2017 |
Mikaberidze A, Paveley N, Bonhoeffer S, van den Bosch F. Emergence of resistance to fungicides: the role of fungicide dose. Phytopathology. PMID 28079455 DOI: 10.1094/Phyto-08-16-0297-R |
0.352 |
|
| 2017 |
Fingerhuth SM, Low N, Bonhoeffer S, Althaus CL. P3.212 Antibiotic resistance detection is essential for gonorrhoea point-of-care testing: a mathematical modelling study Sexually Transmitted Infections. 93. DOI: 10.1136/Sextrans-2017-053264.447 |
0.305 |
|
| 2016 |
Alexander HK, Mayer SI, Bonhoeffer S. Population heterogeneity in mutation rate increases the frequency of higher-order mutants and reduces long-term mutational load. Molecular Biology and Evolution. PMID 27836985 DOI: 10.1093/Molbev/Msw244 |
0.325 |
|
| 2016 |
Polster R, Petropoulos CJ, Bonhoeffer S, Guillaume F. Epistasis and pleiotropy affect the modularity of the genotype-phenotype map of cross-resistance in HIV-1. Molecular Biology and Evolution. PMID 27678053 DOI: 10.1093/Molbev/Msw206 |
0.335 |
|
| 2016 |
Fingerhuth SM, Bonhoeffer S, Low N, Althaus CL. Antibiotic-Resistant Neisseria gonorrhoeae Spread Faster with More Treatment, Not More Sexual Partners. Plos Pathogens. 12: e1005611. PMID 27196299 DOI: 10.1371/Journal.Ppat.1005611 |
0.337 |
|
| 2016 |
Leventhal GE, Bonhoeffer S. Potential Pitfalls in Estimating Viral Load Heritability. Trends in Microbiology. PMID 27185643 DOI: 10.1016/J.Tim.2016.04.008 |
0.321 |
|
| 2016 |
Legros M, Bonhoeffer S. A combined within-host and between-hosts modelling framework for the evolution of resistance to antimalarial drugs. Journal of the Royal Society, Interface / the Royal Society. 13. PMID 27075004 DOI: 10.1098/Rsif.2016.0148 |
0.366 |
|
| 2016 |
Nagaraja P, Alexander HK, Bonhoeffer S, Dixit NM. Influence of recombination on acquisition and reversion of immune escape and compensatory mutations in HIV-1. Epidemics. 14: 11-25. PMID 26972510 DOI: 10.1016/J.Epidem.2015.09.001 |
0.355 |
|
| 2016 |
Cadosch D, Abel Zur Wiesch P, Kouyos R, Bonhoeffer S. The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB. Plos Computational Biology. 12: e1004749. PMID 26967493 DOI: 10.1371/Journal.Pcbi.1004749 |
0.309 |
|
| 2015 |
Frost SD, Pybus OG, Gog JR, Viboud C, Bonhoeffer S, Bedford T. Eight challenges in phylodynamic inference. Epidemics. 10: 88-92. PMID 25843391 DOI: 10.1016/J.Epidem.2014.09.001 |
0.338 |
|
| 2015 |
Yang WL, Kouyos RD, Böni J, Yerly S, Klimkait T, Aubert V, Scherrer AU, Shilaih M, Hinkley T, Petropoulos C, Bonhoeffer S, Günthard HF. Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. Plos Pathogens. 11: e1004722. PMID 25798934 DOI: 10.1371/Journal.Ppat.1004722 |
0.363 |
|
| 2015 |
Fu F, Nowak MA, Bonhoeffer S. Spatial heterogeneity in drug concentrations can facilitate the emergence of resistance to cancer therapy. Plos Computational Biology. 11: e1004142. PMID 25789469 DOI: 10.1371/Journal.Pcbi.1004142 |
0.59 |
|
| 2015 |
Bonhoeffer S, Fraser C, Leventhal GE. High heritability is compatible with the broad distribution of set point viral load in HIV carriers. Plos Pathogens. 11: e1004634. PMID 25658741 DOI: 10.1371/Journal.Ppat.1004634 |
0.347 |
|
| 2015 |
Leventhal GE, Hill AL, Nowak MA, Bonhoeffer S. Evolution and emergence of infectious diseases in theoretical and real-world networks. Nature Communications. 6: 6101. PMID 25592476 DOI: 10.1038/Ncomms7101 |
0.687 |
|
| 2015 |
Vuilleumier S, Bonhoeffer S. Contribution of recombination to the evolutionary history of HIV. Current Opinion in Hiv and Aids. 10: 84-9. PMID 25565174 DOI: 10.1097/Coh.0000000000000137 |
0.337 |
|
| 2015 |
Fingerhuth S, Bonhoeffer S, Low N, Althaus C. 001.1 Evolution and spread of antibiotic-resistant gonorrhoea Sexually Transmitted Infections. 91: A25.1-A25. DOI: 10.1136/Sextrans-2015-052270.79 |
0.339 |
|
| 2014 |
Alexander HK, Martin G, Martin OY, Bonhoeffer S. Evolutionary rescue: linking theory for conservation and medicine. Evolutionary Applications. 7: 1161-79. PMID 25558278 DOI: 10.1111/Eva.12221 |
0.327 |
|
| 2014 |
Boskova V, Bonhoeffer S, Stadler T. Inference of epidemiological dynamics based on simulated phylogenies using birth-death and coalescent models. Plos Computational Biology. 10: e1003913. PMID 25375100 DOI: 10.1371/Journal.Pcbi.1003913 |
0.589 |
|
| 2014 |
Kouyos RD, Metcalf CJ, Birger R, Klein EY, Abel zur Wiesch P, Ankomah P, Arinaminpathy N, Bogich TL, Bonhoeffer S, Brower C, Chi-Johnston G, Cohen T, Day T, Greenhouse B, Huijben S, et al. The path of least resistance: aggressive or moderate treatment? Proceedings. Biological Sciences / the Royal Society. 281: 20140566. PMID 25253451 DOI: 10.1098/Rspb.2014.0566 |
0.34 |
|
| 2014 |
Abel zur Wiesch P, Kouyos R, Abel S, Viechtbauer W, Bonhoeffer S. Cycling empirical antibiotic therapy in hospitals: meta-analysis and models. Plos Pathogens. 10: e1004225. PMID 24968123 DOI: 10.1371/Journal.Ppat.1004225 |
0.354 |
|
| 2014 |
Moradigaravand D, Kouyos R, Hinkley T, Haddad M, Petropoulos CJ, Engelstädter J, Bonhoeffer S. Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1. Plos Genetics. 10: e1004439. PMID 24967626 DOI: 10.1371/Journal.Pgen.1004439 |
0.386 |
|
| 2014 |
Ocampo PS, Lázár V, Papp B, Arnoldini M, Abel zur Wiesch P, Busa-Fekete R, Fekete G, Pál C, Ackermann M, Bonhoeffer S. Antagonism between bacteriostatic and bactericidal antibiotics is prevalent. Antimicrobial Agents and Chemotherapy. 58: 4573-82. PMID 24867991 DOI: 10.1128/Aac.02463-14 |
0.716 |
|
| 2014 |
Avila D, Keiser O, Egger M, Kouyos R, Böni J, Yerly S, Klimkait T, Vernazza PL, Aubert V, Rauch A, Bonhoeffer S, Günthard HF, Stadler T, Spycher BD. Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in Switzerland. American Journal of Epidemiology. 179: 1514-25. PMID 24821749 DOI: 10.1093/Aje/Kwu076 |
0.564 |
|
| 2014 |
Tazzyman SJ, Bonhoeffer S. Plasmids and evolutionary rescue by drug resistance. Evolution; International Journal of Organic Evolution. 68: 2066-78. PMID 24749717 DOI: 10.1111/Evo.12423 |
0.353 |
|
| 2014 |
Fraser C, Lythgoe K, Leventhal GE, Shirreff G, Hollingsworth TD, Alizon S, Bonhoeffer S. Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective. Science (New York, N.Y.). 343: 1243727. PMID 24653038 DOI: 10.1126/Science.1243727 |
0.385 |
|
| 2014 |
Leventhal GE, Günthard HF, Bonhoeffer S, Stadler T. Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmission. Molecular Biology and Evolution. 31: 6-17. PMID 24085839 DOI: 10.1093/Molbev/Mst172 |
0.613 |
|
| 2014 |
Mikaberidze A, McDonald BA, Bonhoeffer S. Can high-risk fungicides be used in mixtures without selecting for fungicide resistance? Phytopathology. 104: 324-31. PMID 24025048 DOI: 10.1094/Phyto-07-13-0204-R |
0.305 |
|
| 2013 |
Hool A, Leventhal GE, Bonhoeffer S. Virus-induced target cell activation reconciles set-point viral load heritability and within-host evolution. Epidemics. 5: 174-80. PMID 24267873 DOI: 10.1016/J.Epidem.2013.09.002 |
0.354 |
|
| 2013 |
Oña L, Kouyos RD, Lachmann M, Bonhoeffer S. On the role of resonance in drug failure under HIV treatment interruption. Theoretical Biology & Medical Modelling. 10: 44. PMID 23844869 DOI: 10.1186/1742-4682-10-44 |
0.371 |
|
| 2013 |
Saenz RA, Bonhoeffer S. Nested model reveals potential amplification of an HIV epidemic due to drug resistance. Epidemics. 5: 34-43. PMID 23438429 DOI: 10.1016/J.Epidem.2012.11.002 |
0.408 |
|
| 2013 |
Stadler T, Bonhoeffer S. Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120198. PMID 23382421 DOI: 10.1098/Rstb.2012.0198 |
0.591 |
|
| 2013 |
Stadler T, Kühnert D, Bonhoeffer S, Drummond AJ. Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV). Proceedings of the National Academy of Sciences of the United States of America. 110: 228-33. PMID 23248286 DOI: 10.1073/Pnas.1207965110 |
0.587 |
|
| 2012 |
Alexander HK, Bonhoeffer S. Pre-existence and emergence of drug resistance in a generalized model of intra-host viral dynamics. Epidemics. 4: 187-202. PMID 23351371 DOI: 10.1016/J.Epidem.2012.10.001 |
0.42 |
|
| 2012 |
Arnoldini M, Mostowy R, Bonhoeffer S, Ackermann M. Evolution of stress response in the face of unreliable environmental signals. Plos Computational Biology. 8: e1002627. PMID 22916000 DOI: 10.1371/Journal.Pcbi.1002627 |
0.7 |
|
| 2012 |
Mostowy R, Kouyos RD, Hoof I, Hinkley T, Haddad M, Whitcomb JM, Petropoulos CJ, Ke?mir C, Bonhoeffer S. Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase. Plos Computational Biology. 8: e1002525. PMID 22654656 DOI: 10.1371/Journal.Pcbi.1002525 |
0.314 |
|
| 2012 |
Cadosch D, Bonhoeffer S, Kouyos R. Assessing the impact of adherence to anti-retroviral therapy on treatment failure and resistance evolution in HIV. Journal of the Royal Society, Interface / the Royal Society. 9: 2309-20. PMID 22417909 DOI: 10.1098/Rsif.2012.0127 |
0.403 |
|
| 2012 |
Kouyos RD, Leventhal GE, Hinkley T, Haddad M, Whitcomb JM, Petropoulos CJ, Bonhoeffer S. Exploring the complexity of the HIV-1 fitness landscape. Plos Genetics. 8: e1002551. PMID 22412384 DOI: 10.1371/Journal.Pgen.1002551 |
0.355 |
|
| 2012 |
Leventhal GE, Kouyos R, Stadler T, Wyl Vv, Yerly S, Böni J, Cellerai C, Klimkait T, Günthard HF, Bonhoeffer S. Inferring epidemic contact structure from phylogenetic trees. Plos Computational Biology. 8: e1002413. PMID 22412361 DOI: 10.1371/Journal.Pcbi.1002413 |
0.566 |
|
| 2012 |
Stadler T, Kouyos R, von Wyl V, Yerly S, Böni J, Bürgisser P, Klimkait T, Joos B, Rieder P, Xie D, Günthard HF, Drummond AJ, Bonhoeffer S. Estimating the basic reproductive number from viral sequence data. Molecular Biology and Evolution. 29: 347-57. PMID 21890480 DOI: 10.1093/Molbev/Msr217 |
0.606 |
|
| 2012 |
Legros M, Bonhoeffer S. Evolution of drug resistance in malaria parasites Malaria Journal. 11. DOI: 10.1186/1475-2875-11-S1-P63 |
0.336 |
|
| 2011 |
Kouyos RD, von Wyl V, Hinkley T, Petropoulos CJ, Haddad M, Whitcomb JM, Böni J, Yerly S, Cellerai C, Klimkait T, Günthard HF, Bonhoeffer S. Assessing predicted HIV-1 replicative capacity in a clinical setting. Plos Pathogens. 7: e1002321. PMID 22072960 DOI: 10.1371/Journal.Ppat.1002321 |
0.358 |
|
| 2011 |
Kouyos RD, Abel Zur Wiesch P, Bonhoeffer S. On being the right size: the impact of population size and stochastic effects on the evolution of drug resistance in hospitals and the community. Plos Pathogens. 7: e1001334. PMID 21533212 DOI: 10.1371/Journal.Ppat.1001334 |
0.311 |
|
| 2011 |
Hinkley T, Martins J, Chappey C, Haddad M, Stawiski E, Whitcomb JM, Petropoulos CJ, Bonhoeffer S. A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase. Nature Genetics. 43: 487-9. PMID 21441930 DOI: 10.1038/Ng.795 |
0.399 |
|
| 2011 |
Kouyos RD, Abel Zur Wiesch P, Bonhoeffer S. Informed switching strongly decreases the prevalence of antibiotic resistance in hospital wards. Plos Computational Biology. 7: e1001094. PMID 21390265 DOI: 10.1371/Journal.Pcbi.1001094 |
0.328 |
|
| 2011 |
zur Wiesch PA, Kouyos R, Engelstädter J, Regoes RR, Bonhoeffer S. Population biological principles of drug-resistance evolution in infectious diseases. The Lancet. Infectious Diseases. 11: 236-47. PMID 21371657 DOI: 10.1016/S1473-3099(10)70264-4 |
0.38 |
|
| 2011 |
Mostowy R, Kouyos RD, Fouchet D, Bonhoeffer S. The role of recombination for the coevolutionary dynamics of HIV and the immune response. Plos One. 6: e16052. PMID 21364750 DOI: 10.1371/Journal.Pone.0016052 |
0.369 |
|
| 2011 |
Kouyos RD, von Wyl V, Yerly S, Böni J, Rieder P, Joos B, Taffé P, Shah C, Bürgisser P, Klimkait T, Weber R, Hirschel B, Cavassini M, Rauch A, Battegay M, ... ... Bonhoeffer S, et al. Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 52: 532-9. PMID 21220770 DOI: 10.1093/Cid/Ciq164 |
0.364 |
|
| 2010 |
Martins JZ, Chappey C, Haddad M, Whitcomb JM, Stawiski E, Petropoulos CJ, Bonhoeffer S. Principal component analysis of general patterns of HIV-1 replicative fitness in different drug environments. Epidemics. 2: 85-91. PMID 21352778 DOI: 10.1016/J.Epidem.2010.03.003 |
0.375 |
|
| 2010 |
Alizon S, von Wyl V, Stadler T, Kouyos RD, Yerly S, Hirschel B, Böni J, Shah C, Klimkait T, Furrer H, Rauch A, Vernazza PL, Bernasconi E, Battegay M, Bürgisser P, ... ... Bonhoeffer S, et al. Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. Plos Pathogens. 6: e1001123. PMID 20941398 DOI: 10.1371/Journal.Ppat.1001123 |
0.624 |
|
| 2010 |
Kouyos RD, von Wyl V, Yerly S, Böni J, Taffé P, Shah C, Bürgisser P, Klimkait T, Weber R, Hirschel B, Cavassini M, Furrer H, Battegay M, Vernazza PL, Bernasconi E, ... ... Bonhoeffer S, et al. Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. The Journal of Infectious Diseases. 201: 1488-97. PMID 20384495 DOI: 10.1086/651951 |
0.31 |
|
| 2010 |
Schulz zur Wiesch P, Engelstädter J, Bonhoeffer S. Compensation of fitness costs and reversibility of antibiotic resistance mutations. Antimicrobial Agents and Chemotherapy. 54: 2085-95. PMID 20176903 DOI: 10.1128/Aac.01460-09 |
0.331 |
|
| 2009 |
Kouyos RD, Fouchet D, Bonhoeffer S. Recombination and drug resistance in HIV: population dynamics and stochasticity. Epidemics. 1: 58-69. PMID 21352751 DOI: 10.1016/J.Epidem.2008.11.001 |
0.402 |
|
| 2009 |
Misevic D, Kouyos RD, Bonhoeffer S. Predicting the evolution of sex on complex fitness landscapes. Plos Computational Biology. 5: e1000510. PMID 19763171 DOI: 10.1371/Journal.Pcbi.1000510 |
0.733 |
|
| 2009 |
Müller V, von Wyl V, Yerly S, Böni J, Klimkait T, Bürgisser P, Ledergerber B, Günthard HF, Bonhoeffer S. African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study. Aids (London, England). 23: 1269-76. PMID 19461503 DOI: 10.1097/Qad.0B013E32832D4096 |
0.314 |
|
| 2009 |
Novak M, Pfeiffer T, Ackermann M, Bonhoeffer S. Bacterial growth properties at low optical densities. Antonie Van Leeuwenhoek. 96: 267-74. PMID 19390987 DOI: 10.1007/S10482-009-9342-7 |
0.701 |
|
| 2009 |
von Wyl V, Yerly S, Bürgisser P, Klimkait T, Battegay M, Bernasconi E, Cavassini M, Furrer H, Hirschel B, Vernazza PL, Francioli P, Bonhoeffer S, Ledergerber B, Günthard HF. Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 48: 979-87. PMID 19228107 DOI: 10.1086/597352 |
0.377 |
|
| 2009 |
Magnus C, Rusert P, Bonhoeffer S, Trkola A, Regoes RR. Estimating the stoichiometry of human immunodeficiency virus entry. Journal of Virology. 83: 1523-31. PMID 19019953 DOI: 10.1128/Jvi.01764-08 |
0.351 |
|
| 2009 |
Kouyos RD, Salathé M, Otto SP, Bonhoeffer S. The role of epistasis on the evolution of recombination in host-parasite coevolution. Theoretical Population Biology. 75: 1-13. PMID 18957303 DOI: 10.1016/J.Tpb.2008.09.007 |
0.301 |
|
| 2008 |
Marconi V, Bonhoeffer S, Paredes R, Lu J, Hoh R, Martin JN, Deeks SG, Kuritzkes DR. Viral dynamics and in vivo fitness of HIV-1 in the presence and absence of enfuvirtide. Journal of Acquired Immune Deficiency Syndromes (1999). 48: 572-6. PMID 18645515 DOI: 10.1097/Qai.0B013E31817Bbc4E |
0.383 |
|
| 2008 |
Salathé M, Kouyos RD, Regoes RR, Bonhoeffer S. Rapid parasite adaptation drives selection for high recombination rates. Evolution; International Journal of Organic Evolution. 62: 295-300. PMID 18039325 DOI: 10.1111/J.1558-5646.2007.00265.X |
0.311 |
|
| 2007 |
Kouyos RD, Salathé M, Bonhoeffer S. The Red Queen and the persistence of linkage-disequilibrium oscillations in finite and infinite populations. Bmc Evolutionary Biology. 7: 211. PMID 17986336 DOI: 10.1186/1471-2148-7-211 |
0.309 |
|
| 2007 |
Débarre F, Bonhoeffer S, Regoes RR. The effect of population structure on the emergence of drug resistance during influenza pandemics. Journal of the Royal Society, Interface / the Royal Society. 4: 893-906. PMID 17609176 DOI: 10.1098/Rsif.2007.1126 |
0.363 |
|
| 2007 |
Kouyos RD, Silander OK, Bonhoeffer S. Epistasis between deleterious mutations and the evolution of recombination. Trends in Ecology & Evolution. 22: 308-15. PMID 17337087 DOI: 10.1016/J.Tree.2007.02.014 |
0.327 |
|
| 2006 |
Soyer OS, Bonhoeffer S. Evolution of complexity in signaling pathways. Proceedings of the National Academy of Sciences of the United States of America. 103: 16337-42. PMID 17060629 DOI: 10.1073/Pnas.0604449103 |
0.623 |
|
| 2006 |
Kouyos RD, Althaus CL, Bonhoeffer S. Stochastic or deterministic: what is the effective population size of HIV-1? Trends in Microbiology. 14: 507-11. PMID 17049239 DOI: 10.1016/J.Tim.2006.10.001 |
0.335 |
|
| 2006 |
Brandin E, Thorstensson R, Bonhoeffer S, Albert J. Rapid viral decay in simian immunodeficiency virus-infected macaques receiving quadruple antiretroviral therapy. Journal of Virology. 80: 9861-4. PMID 16973590 DOI: 10.1128/Jvi.00394-06 |
0.349 |
|
| 2006 |
Novak M, Pfeiffer T, Lenski RE, Sauer U, Bonhoeffer S. Experimental tests for an evolutionary trade-off between growth rate and yield in E. coli. The American Naturalist. 168: 242-51. PMID 16874633 DOI: 10.1086/506527 |
0.642 |
|
| 2006 |
Funk GA, Oxenius A, Fischer M, Opravil M, Joos B, Flepp M, Weber R, Günthard HF, Bonhoeffer S. HIV replication elicits little cytopathic effects in vivo: analysis of surrogate markers for virus production, cytotoxic T cell response and infected cell death. Journal of Medical Virology. 78: 1141-6. PMID 16847964 DOI: 10.1002/Jmv.20674 |
0.35 |
|
| 2006 |
Regoes RR, Bowen EF, Cope AV, Gor D, Hassan-Walker AF, Prentice HG, Johnson MA, Sweny P, Burroughs AK, Griffiths PD, Bonhoeffer S, Emery VC. Modelling cytomegalovirus replication patterns in the human host: factors important for pathogenesis. Proceedings. Biological Sciences / the Royal Society. 273: 1961-7. PMID 16822758 DOI: 10.1098/Rspb.2006.3506 |
0.303 |
|
| 2006 |
Regoes RR, Bonhoeffer S. Emergence of drug-resistant influenza virus: population dynamical considerations. Science (New York, N.Y.). 312: 389-91. PMID 16627735 DOI: 10.1126/Science.1122947 |
0.371 |
|
| 2006 |
Müller V, Ledergerber B, Perrin L, Klimkait T, Furrer H, Telenti A, Bernasconi E, Vernazza P, Günthard HF, Bonhoeffer S. Stable virulence levels in the HIV epidemic of Switzerland over two decades. Aids (London, England). 20: 889-94. PMID 16549973 DOI: 10.1097/01.Aids.0000218553.51908.6B |
0.356 |
|
| 2006 |
Kouyos RD, Otto SP, Bonhoeffer S. Effect of varying epistasis on the evolution of recombination. Genetics. 173: 589-97. PMID 16547114 DOI: 10.1534/Genetics.105.053108 |
0.302 |
|
| 2006 |
Soyer OS, Pfeiffer T, Bonhoeffer S. Simulating the evolution of signal transduction pathways. Journal of Theoretical Biology. 241: 223-32. PMID 16403533 DOI: 10.1016/J.Jtbi.2005.11.024 |
0.615 |
|
| 2006 |
Salathé M, Ackermann M, Bonhoeffer S. The effect of multifunctionality on the rate of evolution in yeast. Molecular Biology and Evolution. 23: 721-2. PMID 16380406 DOI: 10.1093/Molbev/Msj086 |
0.701 |
|
| 2006 |
Soyer OS, Salathé M, Bonhoeffer S. Signal transduction networks: topology, response and biochemical processes. Journal of Theoretical Biology. 238: 416-25. PMID 16045939 DOI: 10.1016/J.Jtbi.2005.05.030 |
0.61 |
|
| 2005 |
Salathé M, May RM, Bonhoeffer S. The evolution of network topology by selective removal. Journal of the Royal Society, Interface / the Royal Society. 2: 533-6. PMID 16849212 DOI: 10.1098/Rsif.2005.0072 |
0.563 |
|
| 2005 |
Althaus CL, Bonhoeffer S. Stochastic interplay between mutation and recombination during the acquisition of drug resistance mutations in human immunodeficiency virus type 1. Journal of Virology. 79: 13572-8. PMID 16227277 DOI: 10.1128/Jvi.79.21.13572-13578.2005 |
0.414 |
|
| 2005 |
Brandin E, Broström C, Gille E, Bonhoeffer S, Albert J. Short communication: HIV type 2 dynamics. Aids Research and Human Retroviruses. 21: 608-10. PMID 16060831 DOI: 10.1089/Aid.2005.21.608 |
0.352 |
|
| 2005 |
Pfeiffer T, Soyer OS, Bonhoeffer S. The evolution of connectivity in metabolic networks. Plos Biology. 3: e228. PMID 16000019 DOI: 10.1371/Journal.Pbio.0030228 |
0.604 |
|
| 2005 |
Regoes RR, Bonhoeffer S. The HIV coreceptor switch: a population dynamical perspective. Trends in Microbiology. 13: 269-77. PMID 15936659 DOI: 10.1016/J.Tim.2005.04.005 |
0.384 |
|
| 2005 |
Funk GA, Jansen VA, Bonhoeffer S, Killingback T. Spatial models of virus-immune dynamics. Journal of Theoretical Biology. 233: 221-36. PMID 15619362 DOI: 10.1016/J.Jtbi.2004.10.004 |
0.33 |
|
| 2005 |
Salathé M, Scherer A, Bonhoeffer S. Neutral drift and polymorphism in gene-for-gene systems Ecology Letters. 8: 925-932. DOI: 10.1111/J.1461-0248.2005.00794.X |
0.33 |
|
| 2004 |
Bonhoeffer S, Chappey C, Parkin NT, Whitcomb JM, Petropoulos CJ. Evidence for positive epistasis in HIV-1. Science (New York, N.Y.). 306: 1547-50. PMID 15567861 DOI: 10.1126/Science.1101786 |
0.323 |
|
| 2004 |
Ciuffi A, Bleiber G, Muñoz M, Martinez R, Loeuillet C, Rehr M, Fischer M, Günthard HF, Oxenius A, Meylan P, Bonhoeffer S, Trono D, Telenti A. Entry and transcription as key determinants of differences in CD4 T-cell permissiveness to human immunodeficiency virus type 1 infection. Journal of Virology. 78: 10747-54. PMID 15367641 DOI: 10.1128/Jvi.78.19.10747-10754.2004 |
0.326 |
|
| 2004 |
Hersberger M, Bonhoeffer S, Rampini SK, Opravil M, Marti-Jaun J, Telenti A, Hänseler E, Ledergerber B, Speck RF. CCTTT-repeat polymorphism of the inducible nitric oxide synthase is not associated with HIV pathogenesis. Clinical and Experimental Immunology. 137: 566-9. PMID 15320907 DOI: 10.1111/J.1365-2249.2004.02574.X |
0.317 |
|
| 2004 |
Rusert P, Fischer M, Joos B, Leemann C, Kuster H, Flepp M, Bonhoeffer S, Günthard HF, Trkola A. Quantification of infectious HIV-1 plasma viral load using a boosted in vitro infection protocol. Virology. 326: 113-29. PMID 15262500 DOI: 10.1016/J.Virol.2004.05.022 |
0.343 |
|
| 2004 |
Trkola A, Kuster H, Leemann C, Oxenius A, Fagard C, Furrer H, Battegay M, Vernazza P, Bernasconi E, Weber R, Hirschel B, Bonhoeffer S, Günthard HF. Humoral immunity to HIV-1: kinetics of antibody responses in chronic infection reflects capacity of immune system to improve viral set point. Blood. 104: 1784-92. PMID 15187026 DOI: 10.1182/Blood-2004-01-0251 |
0.314 |
|
| 2004 |
Bretscher MT, Althaus CL, Müller V, Bonhoeffer S. Recombination in HIV and the evolution of drug resistance: for better or for worse? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 26: 180-8. PMID 14745836 DOI: 10.1002/Bies.10386 |
0.42 |
|
| 2003 |
Müller V, Bonhoeffer S. Mathematical approaches in the study of viral kinetics and drug resistance in HIV-1 infection. Current Drug Targets. Infectious Disorders. 3: 329-44. PMID 14754433 DOI: 10.2174/1568005033481042 |
0.405 |
|
| 2003 |
Trkola A, Kuster H, Leemann C, Ruprecht C, Joos B, Telenti A, Hirschel B, Weber R, Bonhoeffer S, Günthard HF. Human immunodeficiency virus type 1 fitness is a determining factor in viral rebound and set point in chronic infection. Journal of Virology. 77: 13146-55. PMID 14645571 DOI: 10.1128/Jvi.77.24.13146-13155.2003 |
0.362 |
|
| 2003 |
Metzner KJ, Bonhoeffer S, Fischer M, Karanicolas R, Allers K, Joos B, Weber R, Hirschel B, Kostrikis LG, Günthard HF. Emergence of minor populations of human immunodeficiency virus type 1 carrying the M184V and L90M mutations in subjects undergoing structured treatment interruptions. The Journal of Infectious Diseases. 188: 1433-43. PMID 14624368 DOI: 10.1086/379215 |
0.402 |
|
| 2003 |
Bonhoeffer S, Funk GA, Günthard HF, Fischer M, Müller V. Glancing behind virus load variation in HIV-1 infection. Trends in Microbiology. 11: 499-504. PMID 14607066 DOI: 10.1016/J.Tim.2003.09.002 |
0.348 |
|
| 2002 |
Bonhoeffer S, Sniegowski P. Virus evolution: the importance of being erroneous. Nature. 420: 367, 369. PMID 12459766 DOI: 10.1038/420367A |
0.328 |
|
| 2002 |
Bonhoeffer S, Barbour AD, De Boer RJ. Procedures for reliable estimation of viral fitness from time-series data. Proceedings. Biological Sciences / the Royal Society. 269: 1887-93. PMID 12350250 DOI: 10.1098/Rspb.2002.2097 |
0.393 |
|
| 2002 |
Regoes R, Bonhoeffer S. HIV coreceptor usage and drug treatment. Journal of Theoretical Biology. 217: 443-57. PMID 12234752 DOI: 10.1006/Jtbi.2002.3049 |
0.335 |
|
| 2002 |
Müller V, Vigueras-Gómez JF, Bonhoeffer S. Decelerating decay of latently infected cells during prolonged therapy for human immunodeficiency virus type 1 infection Journal of Virology. 76: 8963-8965. PMID 12163616 DOI: 10.1128/Jvi.76.17.8963-8965.2002 |
0.336 |
|
| 2002 |
Regoes RR, Staprans SI, Feinberg MB, Bonhoeffer S. Contribution of peaks of virus load to simian immunodeficiency virus pathogenesis Journal of Virology. 76: 2573-2578. PMID 11836438 DOI: 10.1128/Jvi.76.5.2573-2578.2002 |
0.319 |
|
| 2002 |
Ortiz GM, Hu J, Goldwitz JA, Chandwani R, Larsson M, Bhardwaj N, Bonhoeffer S, Ramratnam B, Zhang L, Markowitz MM, Nixon DF. Residual viral replication during antiretroviral therapy boosts human immunodeficiency virus type 1-specific CD8+ T-cell responses in subjects treated early after infection Journal of Virology. 76: 411-415. PMID 11739706 DOI: 10.1128/Jvi.76.1.411-415.2002 |
0.324 |
|
| 2001 |
Betts MR, Ambrozak DR, Douek DC, Bonhoeffer S, Brenchley JM, Casazza JP, Koup RA, Picker LJ. Analysis of total human immunodeficiency virus (HIV)-specific CD4+ and CD8+ T-cell responses: Relationship to viral load in untreated HIV infection Journal of Virology. 75: 11983-11991. PMID 11711588 DOI: 10.1128/Jvi.75.24.11983-11991.2001 |
0.31 |
|
| 2001 |
GarcÃa F, Plana M, Ortiz GM, Bonhoeffer S, Soriano A, Vidal C, Cruceta A, Arnedo M, Gil C, Pantaleo G, Pumarola T, Gallart T, Nixon DF, Miró JM, Gatell JM. The virological and immunological consequences of structured treatment interruptions in chronic HIV-1 infection. Aids (London, England). 15: F29-40. PMID 11416735 DOI: 10.1097/00002030-200106150-00002 |
0.362 |
|
| 2001 |
Funk GA, Fischer M, Joos B, Opravil M, Günthard HF, Ledergerber B, Bonhoeffer S. Quantification of in vivo replicative capacity of HIV-1 in different compartments of infected cells Journal of Acquired Immune Deficiency Syndromes. 26: 397-404. PMID 11391158 DOI: 10.1097/00126334-200104150-00001 |
0.358 |
|
| 2000 |
Bonhoeffer S, Rembiszewski M, Ortiz GM, Nixon DF. Risks and benefits of structured antiretroviral drug therapy interruptions in HIV-1 infection Aids. 14: 2313-2322. PMID 11089619 DOI: 10.1097/00002030-200010200-00012 |
0.373 |
|
| 2000 |
Regoes RR, Nowak MA, Bonhoeffer S. Evolution of virulence in a heterogeneous host population Evolution. 54: 64-71. PMID 10937184 DOI: 10.1111/J.0014-3820.2000.Tb00008.X |
0.567 |
|
| 2000 |
Ribeiro RM, Bonhoeffer S. Production of resistant HIV mutants during antiretroviral therapy Proceedings of the National Academy of Sciences of the United States of America. 97: 7681-7686. PMID 10884399 DOI: 10.1073/Pnas.97.14.7681 |
0.597 |
|
| 2000 |
Jin X, Demoitie MA, Donahoe SM, Ogg GS, Bonhoeffer S, Kakimoto WM, Gillespie G, Moss PA, Dyer W, Kurilla MG, Riddell SR, Downie J, Sullivan JS, McMichael AJ, Workman C, et al. High frequency of cytomegalovirus-specific cytotoxic T-effector cells in HLA-A*0201-positive subjects during multiple viral coinfectious Journal of Infectious Diseases. 181: 165-175. PMID 10608763 DOI: 10.1086/315201 |
0.322 |
|
| 1999 |
Ramratnam B, Bonhoeffer S, Binley J, Hurley A, Zhang L, Mittler JE, Markowitz M, Moore JP, Perelson AS, Ho DD. Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis. Lancet (London, England). 354: 1782-5. PMID 10577640 DOI: 10.1016/S0140-6736(99)02035-8 |
0.327 |
|
| 1999 |
Ortiz GM, Nixon DF, Trkola A, Binley J, Jin X, Bonhoeffer S, Kuebler PJ, Donahoe SM, Demoitie MA, Kakimoto WM, Ketas T, Clas B, Heymann JJ, Zhang L, Cao Y, et al. HIV-1-specific immune responses in subjects who temporarily contain virus replication after discontinuation of highly active antiretroviral therapy. The Journal of Clinical Investigation. 104: R13-8. PMID 10491418 DOI: 10.1172/Jci7371 |
0.336 |
|
| 1999 |
Parkin NT, Lie YS, Hellmann N, Markowitz M, Bonhoeffer S, Ho DD, Petropoulos CJ. Phenotypic changes in drug susceptibility associated with failure of human immunodeficiency virus type 1 (HIV-1) triple combination therapy Journal of Infectious Diseases. 180: 865-870. PMID 10438382 DOI: 10.1086/314928 |
0.36 |
|
| 1999 |
Nixon DF, Douek D, Kuebler PJ, Jin X, Vesanen M, Bonhoeffer S, Cao Y, Koup RA, Ho DD, Markowitz M. Molecular tracking of an Human Immunodeficiency Virus nef specific cytotoxic T-cell clone shows persistence of clone-specific T-cell receptor DNA but not mRNA following early combination antiretroviral therapy Immunology Letters. 66: 219-228. PMID 10203058 DOI: 10.1016/S0165-2478(98)00162-X |
0.342 |
|
| 1999 |
Ribeiro RM, Bonhoeffer S. A stochastic model for primary HIV infection: Optimal timing of therapy Aids. 13: 351-357. PMID 10199225 DOI: 10.1097/00002030-199902250-00007 |
0.62 |
|
| 1999 |
Levin BR, Lipsitch M, Bonhoeffer S. Population biology, evolution, and infectious disease: convergence and synthesis. Science (New York, N.Y.). 283: 806-9. PMID 9933155 DOI: 10.1126/Science.283.5403.806 |
0.307 |
|
| 1999 |
Zhang L, Dailey PJ, He T, Gettie A, Bonhoeffer S, Perelson AS, Ho DD. Rapid clearance of simian immunodeficiency virus particles from plasma of rhesus macaques Journal of Virology. 73: 855-860. PMID 9847402 DOI: 10.1128/Jvi.73.1.855-860.1999 |
0.345 |
|
| 1999 |
Ogg GS, Jin X, Bonhoeffer S, Moss P, Nowak MA, Monard S, Segal JP, Cao Y, Rowland-Jones SL, Hurley A, Markowitz M, Ho DD, McMichael AJ, Nixon DF. Decay kinetics of human immunodeficiency virus-specifiic effector cytotoxic T lymphocytes after combination antiretroviral therapy Journal of Virology. 73: 797-800. PMID 9847391 DOI: 10.1128/Jvi.73.1.797-800.1999 |
0.596 |
|
| 1998 |
Bonhoeffer S. Models of viral kinetics and drug resistance in HIV-1 infection Aids Patient Care and Stds. 12: 769-774. PMID 11362021 DOI: 10.1089/Apc.1998.12.769 |
0.391 |
|
| 1998 |
Morris L, Binley JM, Clas BA, Bonhoeffer S, Astill TP, Kost R, Hurley A, Cao Y, Markowitz M, Ho DD, Moore JP. HIV-1 antigen-specific and -nonspecific B cell responses are sensitive to combination antiretroviral therapy Journal of Experimental Medicine. 188: 233-245. PMID 9670036 DOI: 10.1084/Jem.188.2.233 |
0.333 |
|
| 1998 |
Ribeiro RM, Bonhoeffer S, Nowak MA. The frequency of resistant mutant virus before antiviral therapy Aids. 12: 461-465. PMID 9543443 DOI: 10.1097/00002030-199805000-00006 |
0.703 |
|
| 1998 |
Ogg GS, Jin X, Bonhoeffer S, Dunbar PR, Nowak MA, Monard S, Segal JP, Cao Y, Rowland-Jones SL, Cerundolo V, Hurley A, Markowitz M, Ho DD, Nixon DF, McMichael AJ. Quantitation of HIV-1-specific cytotoxic T lymphocytes and plasma load of viral RNA Science. 279: 2103-2106. PMID 9516110 DOI: 10.1126/Science.279.5359.2103 |
0.585 |
|
| 1998 |
Levin BR, Antia R, Berliner E, Bloland P, Bonhoeffer S, Cohen M, DeRouin T, Fields PI, Jafari H, Jernigan D, Lipsitch M, McGowan JE, Mead P, Nowak M, Porco T, et al. Resistance to antimicrobial chemotherapy: a prescription for research and action. The American Journal of the Medical Sciences. 315: 87-94. PMID 9472907 DOI: 10.1016/S0002-9629(15)40282-4 |
0.583 |
|
| 1998 |
Mohri H, Bonhoeffer S, Monard S, Perelson AS, Ho DD. Rapid turnover of T lymphocytes in SIV-infected rhesus macaques Science. 279: 1223-1227. PMID 9469816 DOI: 10.1126/Science.279.5354.1223 |
0.312 |
|
| 1997 |
Bonhoeffer S, Lipsitch M, Levin BR. Evaluating treatment protocols to prevent antibiotic resistance. Proceedings of the National Academy of Sciences of the United States of America. 94: 12106-11. PMID 9342370 DOI: 10.1073/Pnas.94.22.12106 |
0.339 |
|
| 1997 |
Bittner B, Bonhoeffer S, Nowak MA. Virus load and antigenic diversity Bulletin of Mathematical Biology. 59: 881-896. PMID 9281903 DOI: 10.1016/S0092-8240(97)00034-7 |
0.589 |
|
| 1997 |
Bonhoeffer S, May RM, Shaw GM, Nowak MA. Virus dynamics and drug therapy. Proceedings of the National Academy of Sciences of the United States of America. 94: 6971-6. PMID 9192676 DOI: 10.1073/Pnas.94.13.6971 |
0.729 |
|
| 1997 |
Bonhoeffer S, Nowak MA. Pre-existence and emergence of drug resistance in HIV-1 infection Proceedings of the Royal Society B: Biological Sciences. 264: 631-637. PMID 9178534 DOI: 10.1098/Rspb.1997.0089 |
0.617 |
|
| 1997 |
Bonhoeffer S, Coffin JM, Nowak MA. Human immunodeficiency virus drug therapy and virus load. Journal of Virology. 71: 3275-8. PMID 9060694 DOI: 10.1128/Jvi.71.4.3275-3278.1997 |
0.594 |
|
| 1997 |
Nowak MA, Bonhoeffer S, Shaw GM, May RM. Anti-viral drug treatment: dynamics of resistance in free virus and infected cell populations. Journal of Theoretical Biology. 184: 203-17. PMID 9059598 DOI: 10.1006/Jtbi.1996.0307 |
0.737 |
|
| 1996 |
Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM. Explaining "linguistic features" of noncoding DNA. Science (New York, N.Y.). 271: 14b-5b. PMID 17798153 DOI: 10.1126/Science.271.5245.14B |
0.654 |
|
| 1996 |
Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM. No signs of hidden language in noncoding DNA. Physical Review Letters. 76: 1977. PMID 10060572 DOI: 10.1103/Physrevlett.76.1977 |
0.651 |
|
| 1996 |
Nowak MA, Anderson RM, Boerlijst MC, Bonhoeffer S, May RM, McMichael AJ. HIV-1 evolution and disease progression. Science (New York, N.Y.). 274: 1008-11. PMID 8966557 DOI: 10.1126/Science.274.5289.1008 |
0.689 |
|
| 1996 |
Bonhoeffer S, Lenski RE, Ebert D. The curse of the pharaoh: the evolution of virulence in pathogens with long living propagules. Proceedings. Biological Sciences / the Royal Society. 263: 715-21. PMID 8763793 DOI: 10.1098/Rspb.1996.0107 |
0.651 |
|
| 1996 |
Herz AV, Bonhoeffer S, Anderson RM, May RM, Nowak MA. Viral dynamics in vivo: limitations on estimates of intracellular delay and virus decay. Proceedings of the National Academy of Sciences of the United States of America. 93: 7247-51. PMID 8692977 DOI: 10.1073/Pnas.93.14.7247 |
0.719 |
|
| 1996 |
Nowak MA, Bonhoeffer S, Hill AM, Boehme R, Thomas HC, McDade H. Viral dynamics in hepatitis B virus infection. Proceedings of the National Academy of Sciences of the United States of America. 93: 4398-402. PMID 8633078 DOI: 10.1073/Pnas.93.9.4398 |
0.607 |
|
| 1996 |
Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM. Explaining "linguistic features" of noncoding DNA. Science (New York, N.Y.). 271: 14-5. PMID 8539587 |
0.631 |
|
| 1996 |
Boerlijst MC, Bonhoeffer S, Nowak MA. Viral quasi-species and recombination Proceedings of the Royal Society B: Biological Sciences. 263: 1577-1584. DOI: 10.1098/Rspb.1996.0231 |
0.57 |
|
| 1995 |
Nowak MA, Bonhoeffer S, Loveday C, Balfe P, Semple M, Kaye S, Tenant-Flowers M, Tedder R. HIV results in the frame. Results confirmed Nature. 375: 193. PMID 7746311 DOI: 10.1038/375193A0 |
0.576 |
|
| 1995 |
Bonhoeffer S, Nowak MA. Can live attenuated virus work as post-exposure treatment? Immunology Today. 16: 131-135. PMID 7718085 DOI: 10.1016/0167-5699(95)80129-4 |
0.581 |
|
| 1995 |
Bonhoeffer S, Holmes EC, Nowak MA. Causes of HIV diversity [3] Nature. 376: 125. PMID 7603560 DOI: 10.1038/376125A0 |
0.561 |
|
| 1995 |
Wei X, Ghosh SK, Taylor ME, Johnson VA, Emini EA, Deutsch P, Lifson JD, Bonhoeffer S, Nowak MA, Hahn BH, Saag MS, Shaw GM. Viral dynamics in human immunodeficiency virus type 1 infection Nature. 373: 117-122. PMID 7529365 DOI: 10.1038/373117A0 |
0.609 |
|
| 1994 |
Nowak MA, Bonhoeffer S, May RM. Spatial games and the maintenance of cooperation. Proceedings of the National Academy of Sciences of the United States of America. 91: 4877-81. PMID 8197150 DOI: 10.1073/Pnas.91.11.4877 |
0.669 |
|
| 1994 |
Bonhoeffer S, Nowak MA. Intra-host versus inter-host selection: Viral strategies of immune function impairment Proceedings of the National Academy of Sciences of the United States of America. 91: 8062-8066. PMID 8058757 DOI: 10.1073/Pnas.91.17.8062 |
0.579 |
|
| 1994 |
NOWAK MA, BONHOEFFER S, MAY RM. MORE SPATIAL GAMES International Journal of Bifurcation and Chaos. 4: 33-56. DOI: 10.1142/S0218127494000046 |
0.537 |
|
| 1994 |
Bonhoeffer S, Nowak MA. Mutation and the evolution of virulence Proceedings of the Royal Society B: Biological Sciences. 258: 133-140. DOI: 10.1098/Rspb.1994.0153 |
0.591 |
|
| 1993 |
Bonhoeffer S, McCaskill JS, Stadler PF, Schuster P. RNA multi-structure landscapes - A study based on temperature dependent partition functions European Biophysics Journal. 22: 13-24. PMID 7685689 DOI: 10.1007/Bf00205808 |
0.441 |
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