| Year |
Citation |
Score |
| 2023 |
Chio US, Palovcak E, Autzen AAA, Autzen HE, Muñoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y. Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking. Biorxiv : the Preprint Server For Biology. PMID 37546986 DOI: 10.1101/2023.06.20.545796 |
0.79 |
|
| 2023 |
Wu H, Muñoz EN, Hsieh LJ, Chio US, Gourdet MA, Narlikar GJ, Cheng Y. Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility. Science (New York, N.Y.). PMID 37384669 DOI: 10.1126/science.adf4197 |
0.738 |
|
| 2023 |
Gupta A, Lentzsch AM, Siegel A, Yu Z, Chio US, Cheng Y, Shan SO. Dodecamer assembly of a metazoan AAA chaperone couples substrate extraction to refolding. Science Advances. 9: eadf5336. PMID 37163603 DOI: 10.1126/sciadv.adf5336 |
0.776 |
|
| 2022 |
Zhao J, Makhija S, Zhou C, Zhang H, Wang Y, Muralidharan M, Huang B, Cheng Y. Structural insights into the human PA28-20S proteasome enabled by efficient tagging and purification of endogenous proteins. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207200119. PMID 35858375 DOI: 10.1073/pnas.2207200119 |
0.475 |
|
| 2021 |
Verba K, Gupta M, Azumaya C, Moritz M, Pourmal S, Diallo A, Merz G, Jang G, Bouhaddou M, Fossati A, Brilot A, Diwanji D, Hernandez E, Herrera N, Kratochvil H, ... ... Cheng Y, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Research Square. PMID 34031651 DOI: 10.21203/rs.3.rs-515215/v1 |
0.797 |
|
| 2021 |
Gupta M, Azumaya CM, Moritz M, Pourmal S, Diallo A, Merz GE, Jang G, Bouhaddou M, Fossati A, Brilot AF, Diwanji D, Hernandez E, Herrera N, Kratochvil HT, Lam VL, ... ... Cheng Y, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Biorxiv : the Preprint Server For Biology. PMID 34013269 DOI: 10.1101/2021.05.10.443524 |
0.797 |
|
| 2020 |
Palovcak E, Asarnow D, Campbell MG, Yu Z, Cheng Y. Enhancing the signal-to-noise ratio and generating contrast for cryo-EM images with convolutional neural networks. Iucrj. 7: 1142-1150. PMID 33209325 DOI: 10.1107/S2052252520013184 |
0.661 |
|
| 2020 |
Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM, Weckstein AR, Owens TW, Gupta M, Pourmal S, ... ... Cheng Y, et al. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.). PMID 33060197 DOI: 10.1126/science.abe9403 |
0.766 |
|
| 2020 |
Yu Z, Yu Y, Wang F, Myasnikov AG, Coffino P, Cheng Y. Allosteric coupling between α-rings of the 20S proteasome. Nature Communications. 11: 4580. PMID 32917864 DOI: 10.1038/S41467-020-18415-7 |
0.33 |
|
| 2020 |
Yu Y, Liu H, Yu Z, Witkowska HE, Cheng Y. Stoichiometry of Nucleotide Binding to Proteasome AAA+ ATPase Hexamer Established by Native Mass Spectrometry. Molecular & Cellular Proteomics : McP. PMID 32883800 DOI: 10.1074/Mcp.Ra120.002067 |
0.351 |
|
| 2020 |
Bai Y, Yu Z, Ackerman L, Zhang Y, Bonde J, Li W, Cheng Y, Habelitz S. Protein nanoribbons template enamel mineralization. Proceedings of the National Academy of Sciences of the United States of America. PMID 32737162 DOI: 10.1073/Pnas.2007838117 |
0.337 |
|
| 2020 |
Zhao J, Lin King JV, Paulsen CE, Cheng Y, Julius D. Irritant-evoked activation and calcium modulation of the TRPA1 receptor. Nature. PMID 32641835 DOI: 10.1038/S41586-020-2480-9 |
0.58 |
|
| 2020 |
van Goor MK, de Jager L, Cheng Y, van der Wijst J. High-resolution structures of TRPV channels: unveiling a functionally diverse group of ion channels. Protein Science : a Publication of the Protein Society. PMID 32232875 DOI: 10.1002/Pro.3861 |
0.311 |
|
| 2020 |
Campbell MG, Cormier A, Ito S, Seed RI, Bondesson AJ, Lou J, Marks JD, Baron JL, Cheng Y, Nishimura SL. Cryo-EM Reveals Integrin-Mediated TGF-β Activation without Release from Latent TGF-β. Cell. PMID 31955848 DOI: 10.1016/J.Cell.2019.12.030 |
0.674 |
|
| 2020 |
Smith AA, Autzen HE, Faust B, Mann JL, Muir BW, Howard S, Postma A, Spakowitz AJ, Cheng Y, Appel EA. Lipid Nanodiscs via Ordered Copolymers Chem. 6: 2782-2795. DOI: 10.1016/J.Chempr.2020.08.004 |
0.326 |
|
| 2019 |
Armache JP, Cheng Y. Single-particle cryo-EM: beyond the resolution. National Science Review. 6: 864-866. PMID 31867130 DOI: 10.1093/Nsr/Nwz127 |
0.685 |
|
| 2019 |
Wang F, Yu Z, Betegon M, Campbell MG, Aksel T, Zhao J, Li S, Douglas SM, Cheng Y, Agard DA. Amino and PEG-Amino Graphene Oxide Grids Enrich and Protect Samples for High-resolution Single Particle Cryo-electron Microscopy. Journal of Structural Biology. 107437. PMID 31866389 DOI: 10.1016/J.Jsb.2019.107437 |
0.757 |
|
| 2019 |
Rosen LE, Klebba JE, Asfaha JB, Ghent CM, Campbell MG, Cheng Y, Morgan DO. Cohesin cleavage by separase is enhanced by a substrate motif distinct from the cleavage site. Nature Communications. 10: 5189. PMID 31729382 DOI: 10.1038/S41467-019-13209-Y |
0.698 |
|
| 2019 |
Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ. Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly. Nature Structural & Molecular Biology. 26: 890-898. PMID 31582853 DOI: 10.1038/S41594-019-0292-0 |
0.793 |
|
| 2019 |
Carragher B, Cheng Y, Frost A, Glaeser RM, Lander GC, Nogales E, Wang HW. Current outcomes when optimizing "standard" sample preparation for single-particle cryo-em. Journal of Microscopy. PMID 31553060 DOI: 10.1111/Jmi.12834 |
0.541 |
|
| 2019 |
Diver MM, Cheng Y, Julius D. Structural insights into TRPM8 inhibition and desensitization. Science (New York, N.Y.). PMID 31488702 DOI: 10.1126/Science.Aax6672 |
0.345 |
|
| 2019 |
Autzen HE, Julius D, Cheng Y. Membrane mimetic systems in CryoEM: keeping membrane proteins in their native environment. Current Opinion in Structural Biology. PMID 31279500 DOI: 10.1016/J.Sbi.2019.05.022 |
0.375 |
|
| 2019 |
Armache JP, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar GJ, Cheng Y. Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome. Elife. 8. PMID 31210637 DOI: 10.7554/eLife.46057 |
0.696 |
|
| 2019 |
Armache JP, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar GJ, Cheng Y. Author response: Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome Elife. DOI: 10.7554/Elife.46057.046 |
0.686 |
|
| 2019 |
Campbell MG, Cormier A, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Structural Studies αvβ8 Integrin by Single Particle Cryo-EM Microscopy and Microanalysis. 25: 1312-1313. DOI: 10.1017/S1431927619007293 |
0.718 |
|
| 2018 |
Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Molecular Cell. PMID 30415948 DOI: 10.1016/J.Molcel.2018.10.006 |
0.688 |
|
| 2018 |
Zhang Y, Bulkley DP, Xin Y, Roberts KJ, Asarnow DE, Sharma A, Myers BR, Cho W, Cheng Y, Beachy PA. Structural Basis for Cholesterol Transport-like Activity of the Hedgehog Receptor Patched. Cell. PMID 30415841 DOI: 10.1016/J.Cell.2018.10.026 |
0.327 |
|
| 2018 |
Takasaka N, Seed RI, Cormier A, Bondesson AJ, Lou J, Elattma A, Ito S, Yanagisawa H, Hashimoto M, Ma R, Levine MD, Publicover J, Potts R, Jespersen JM, Campbell MG, ... ... Cheng Y, et al. Integrin αvβ8-expressing tumor cells evade host immunity by regulating TGF-β activation in immune cells. Jci Insight. 3. PMID 30333313 DOI: 10.1172/Jci.Insight.122591 |
0.663 |
|
| 2018 |
Cheng Y. Membrane protein structural biology in the era of single particle cryo-EM. Current Opinion in Structural Biology. 52: 58-63. PMID 30219656 DOI: 10.1016/J.Sbi.2018.08.008 |
0.391 |
|
| 2018 |
Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM. Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proceedings of the National Academy of Sciences of the United States of America. PMID 30190435 DOI: 10.1073/pnas.1805651115 |
0.686 |
|
| 2018 |
Cheng Y. Single-particle cryo-EM-How did it get here and where will it go. Science (New York, N.Y.). 361: 876-880. PMID 30166484 DOI: 10.1126/Science.Aat4346 |
0.341 |
|
| 2018 |
Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, et al. The First Single Particle Analysis Map Challenge: A Summary of the Assessments. Journal of Structural Biology. PMID 30114512 DOI: 10.1016/J.Jsb.2018.08.010 |
0.753 |
|
| 2018 |
Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y. Author Correction: Cryo-EM structure of a fungal mitochondrial calcium uniporter. Nature. PMID 30108362 DOI: 10.1038/S41586-018-0427-1 |
0.664 |
|
| 2018 |
Cormier A, Campbell MG, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Cryo-EM structure of the αvβ8 integrin reveals a mechanism for stabilizing integrin extension. Nature Structural & Molecular Biology. PMID 30061598 DOI: 10.1038/S41594-018-0093-X |
0.728 |
|
| 2018 |
Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y. Cryo-EM structure of a fungal mitochondrial calcium uniporter. Nature. PMID 29995855 DOI: 10.1038/S41586-018-0333-6 |
0.707 |
|
| 2018 |
Binning JM, Smith AM, Hultquist JF, Craik CS, Caretta N, Campbell MG, Burton L, La Greca F, McGregor MJ, Ta HM, Bartholomeeusen K, Peterlin BM, Krogan NJ, Sevillano N, Cheng Y, et al. Fab-based inhibitors reveal ubiquitin independent functions for HIV Vif neutralization of APOBEC3 restriction factors. Plos Pathogens. 14: e1006830. PMID 29304101 DOI: 10.1371/Journal.Ppat.1006830 |
0.704 |
|
| 2018 |
Cormier A, Campbell MG, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Cryo-EM structure of the alpha v beta 8 integrin reveals a mechanism for stabilizing integrin extension. Nature Structural & Molecular Biology. 25: 698-704. DOI: 10.2210/Pdb6Djp/Pdb |
0.68 |
|
| 2017 |
Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbühler K, Ye W, Qi L, Chen T, Craik CS, Nung Jan Y, Minor DL, Cheng Y, et al. Cryo-EM structures of the TMEM16A calcium-activated chloride channel. Nature. PMID 29236684 DOI: 10.1038/Nature25024 |
0.618 |
|
| 2017 |
Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y. Structure of the human TRPM4 ion channel in a lipid nanodisc. Science (New York, N.Y.). PMID 29217581 DOI: 10.1126/Science.Aar4510 |
0.717 |
|
| 2017 |
Cheng Y, Glaeser RM, Nogales E. How Cryo-EM Became so Hot. Cell. 171: 1229-1231. PMID 29195065 DOI: 10.1016/J.Cell.2017.11.016 |
0.323 |
|
| 2017 |
Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y. Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature. PMID 28658211 DOI: 10.1038/Nature22981 |
0.31 |
|
| 2017 |
Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Reports. 19: 2033-2044. PMID 28591576 DOI: 10.1016/J.Celrep.2017.05.029 |
0.363 |
|
| 2017 |
Zheng SQ, Palovcak E, Armache JP, Verba KA, Cheng Y, Agard DA. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nature Methods. PMID 28250466 DOI: 10.1038/Nmeth.4193 |
0.658 |
|
| 2017 |
Asarnow D, Gao Y, Palovcak E, Cheng Y. Feasibility of Cryo-EM for Structural Characterization of Small Membrane Proteins Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.3108 |
0.421 |
|
| 2016 |
Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta. Elife. 5. PMID 27669148 DOI: 10.7554/Elife.17219 |
0.336 |
|
| 2016 |
Gao Y, Cao E, Julius D, Cheng Y. TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action. Nature. PMID 27281200 DOI: 10.1038/Nature17964 |
0.357 |
|
| 2016 |
Frauenfeld J, Löving R, Armache JP, Sonnen AF, Guettou F, Moberg P, Zhu L, Jegerschöld C, Flayhan A, Briggs JA, Garoff H, Löw C, Cheng Y, Nordlund P. A saposin-lipoprotein nanoparticle system for membrane proteins. Nature Methods. PMID 26950744 DOI: 10.1038/Nmeth.3801 |
0.703 |
|
| 2016 |
Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F. Author response: Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta Elife. DOI: 10.7554/Elife.17219.029 |
0.315 |
|
| 2016 |
Gao Y, Cao E, Julius D, Cheng Y. High-Resolution Cryo-EM Structures of TRPV1 Reveal Structural Basis of Ligand Binding and Channel Gating Biophysical Journal. 110: 10a. DOI: 10.1016/J.Bpj.2015.11.111 |
0.352 |
|
| 2015 |
Cheng Y, Walz T. The Special Issue of Microscopy on single-particle cryo-electron microscopy. Microscopy (Oxford, England). PMID 26586604 DOI: 10.1093/Jmicro/Dfv359 |
0.547 |
|
| 2015 |
Wu S, Armache JP, Cheng Y. Single-particle cryo-EM data acquisition by using direct electron detection camera. Microscopy (Oxford, England). PMID 26546989 DOI: 10.1093/Jmicro/Dfv355 |
0.691 |
|
| 2015 |
Goedert M, Cheng Y. Parkinson's disease: Crystals of a toxic core. Nature. 525: 458-9. PMID 26352470 DOI: 10.1038/Nature15630 |
0.354 |
|
| 2015 |
Du J, Lü W, Wu S, Cheng Y, Gouaux E. Glycine receptor mechanism elucidated by electron cryo-microscopy. Nature. PMID 26344198 DOI: 10.1038/Nature14853 |
0.343 |
|
| 2015 |
Chiu PL, Li X, Li Z, Beckett B, Brilot AF, Grigorieff N, Agard DA, Cheng Y, Walz T. Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0. Journal of Structural Biology. PMID 26318383 DOI: 10.1016/J.Jsb.2015.08.015 |
0.743 |
|
| 2015 |
Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nature Methods. 12: 943-6. PMID 26280328 DOI: 10.1038/Nmeth.3541 |
0.302 |
|
| 2015 |
Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D. Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature. 525: 552. PMID 26200340 DOI: 10.1038/Nature14871 |
0.66 |
|
| 2015 |
Cheng Y. Single-Particle Cryo-EM at Crystallographic Resolution. Cell. 161: 450-7. PMID 25910205 DOI: 10.1016/J.Cell.2015.03.049 |
0.371 |
|
| 2015 |
Cheng Y, Grigorieff N, Penczek PA, Walz T. A primer to single-particle cryo-electron microscopy. Cell. 161: 438-49. PMID 25910204 DOI: 10.1016/J.Cell.2015.03.050 |
0.596 |
|
| 2015 |
Rosenberg OS, Dovala D, Li X, Connolly L, Bendebury A, Finer-Moore J, Holton J, Cheng Y, Stroud RM, Cox JS. Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion. Cell. 161: 501-12. PMID 25865481 DOI: 10.1016/J.Cell.2015.03.040 |
0.318 |
|
| 2015 |
Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D. Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature. 520: 511-7. PMID 25855297 DOI: 10.1038/Nature14367 |
0.714 |
|
| 2015 |
DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D. Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement. Nature Methods. 12: 361-5. PMID 25707030 DOI: 10.1038/Nmeth.3286 |
0.303 |
|
| 2015 |
Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nature Methods. 12: 335-8. PMID 25707029 DOI: 10.1038/Nmeth.3287 |
0.324 |
|
| 2015 |
Zhao M, Wu S, Zhou Q, Vivona S, Cipriano DJ, Cheng Y, Brunger AT. Mechanistic insights into the recycling machine of the SNARE complex. Nature. 518: 61-7. PMID 25581794 DOI: 10.1038/Nature14148 |
0.402 |
|
| 2015 |
Shen PS, Park J, Qin Y, Li X, Parsawar K, Larson MH, Cox J, Cheng Y, Lambowitz AM, Weissman JS, Brandman O, Frost A. Protein synthesis. Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains. Science (New York, N.Y.). 347: 75-8. PMID 25554787 DOI: 10.1126/Science.1259724 |
0.341 |
|
| 2015 |
Kim JM, Wu S, Tomasiak TM, Mergel C, Winter MB, Stiller SB, Robles-Colmanares Y, Stroud RM, Tampé R, Craik CS, Cheng Y. Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter Nature. 517: 396-400. PMID 25363761 DOI: 10.1038/Nature13872 |
0.34 |
|
| 2015 |
Cheng Y. Single Particle CryoEM of Integral Membrane Proteins Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.2729 |
0.426 |
|
| 2014 |
Booth DS, Cheng Y, Frankel AD. The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA. Elife. 3: e04121. PMID 25486595 DOI: 10.7554/Elife.04121 |
0.734 |
|
| 2014 |
Bhabha G, Cheng HC, Zhang N, Moeller A, Liao M, Speir JA, Cheng Y, Vale RD. Allosteric communication in the dynein motor domain. Cell. 159: 857-68. PMID 25417161 DOI: 10.1016/J.Cell.2014.10.018 |
0.67 |
|
| 2014 |
Lu J, Yu Y, Zhu I, Cheng Y, Sun PD. Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis. Proceedings of the National Academy of Sciences of the United States of America. 111: 5189-94. PMID 24706838 DOI: 10.1073/Pnas.1322357111 |
0.34 |
|
| 2014 |
Liao M, Cao E, Julius D, Cheng Y. Single particle electron cryo-microscopy of a mammalian ion channel. Current Opinion in Structural Biology. 27: 1-7. PMID 24681231 DOI: 10.1016/J.Sbi.2014.02.005 |
0.712 |
|
| 2014 |
Booth DS, Cheng Y, Frankel AD. Author response: The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA Elife. DOI: 10.7554/Elife.04121.016 |
0.698 |
|
| 2014 |
Leonard JD, Armache J, Naber N, Wu S, Pate E, Cooke R, Cheng Y, Narlikar GJ. The Mechanism of Nucleosome Spacing by a Dimeric Chromatin Remodeling Enzyme Biophysical Journal. 106: 69a-70a. DOI: 10.1016/J.Bpj.2013.11.461 |
0.69 |
|
| 2014 |
He Y, Wu S, Booth D, Agarrd D, Cheng Y, Guthrie C. Structural Studies of the Yeast Prp8-Snu114 Complex Biophysical Journal. 106: 47a. DOI: 10.1016/J.Bpj.2013.11.338 |
0.662 |
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| 2014 |
Agard D, Cheng Y, Glaeser RM, Subramaniam S. Single-particle cryo-electron microscopy (cryo-EM): Progress, challenges, and perspectives for further improvement Advances in Imaging and Electron Physics. 185: 113-137. DOI: 10.1016/B978-0-12-800144-8.00002-1 |
0.362 |
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| 2013 |
Cao E, Liao M, Cheng Y, Julius D. TRPV1 structures in distinct conformations reveal activation mechanisms. Nature. 504: 113-8. PMID 24305161 DOI: 10.1038/Nature12823 |
0.666 |
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| 2013 |
Liao M, Cao E, Julius D, Cheng Y. Structure of the TRPV1 ion channel determined by electron cryo-microscopy. Nature. 504: 107-12. PMID 24305160 DOI: 10.1038/Nature12822 |
0.69 |
|
| 2013 |
Asensio CS, Sirkis DW, Maas JW, Egami K, To TL, Brodsky FM, Shu X, Cheng Y, Edwards RH. Self-assembly of VPS41 promotes sorting required for biogenesis of the regulated secretory pathway. Developmental Cell. 27: 425-37. PMID 24210660 DOI: 10.1016/J.Devcel.2013.10.007 |
0.309 |
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| 2013 |
Li X, Zheng SQ, Egami K, Agard DA, Cheng Y. Influence of electron dose rate on electron counting images recorded with the K2 camera. Journal of Structural Biology. 184: 251-60. PMID 23968652 DOI: 10.1016/J.Jsb.2013.08.005 |
0.305 |
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| 2013 |
Li X, Mooney P, Zheng S, Booth CR, Braunfeld MB, Gubbens S, Agard DA, Cheng Y. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nature Methods. 10: 584-90. PMID 23644547 DOI: 10.1038/Nmeth.2472 |
0.379 |
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| 2013 |
Park S, Li X, Kim HM, Singh CR, Tian G, Hoyt MA, Lovell S, Battaile KP, Zolkiewski M, Coffino P, Roelofs J, Cheng Y, Finley D. Reconfiguration of the proteasome during chaperone-mediated assembly. Nature. 497: 512-6. PMID 23644457 DOI: 10.1038/Nature12123 |
0.315 |
|
| 2013 |
Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 496: 377-81. PMID 23485968 DOI: 10.1038/Nature12032 |
0.672 |
|
| 2013 |
Avila-Sakar A, Li X, Zheng SQ, Cheng Y. Recording high-resolution images of two-dimensional crystals of membrane proteins. Methods in Molecular Biology (Clifton, N.J.). 955: 129-52. PMID 23132059 DOI: 10.1007/978-1-62703-176-9_8 |
0.316 |
|
| 2013 |
Canzio D, Liang M, Naber N, Larson A, Marina D, Garcia J, Madhani H, Cooke R, Schuck P, Cheng Y, Narlikar GJ. Abstract IA23: Functional and structural studies of HP1 heterochromatin Cancer Research. 73. DOI: 10.1158/1538-7445.Cec13-Ia23 |
0.335 |
|
| 2012 |
Schneidman-Duhovny D, Rossi A, Avila-Sakar A, Kim SJ, Velázquez-Muriel J, Strop P, Liang H, Krukenberg KA, Liao M, Kim HM, Sobhanifar S, Dötsch V, Rajpal A, Pons J, Agard DA, ... Cheng Y, et al. A method for integrative structure determination of protein-protein complexes. Bioinformatics (Oxford, England). 28: 3282-9. PMID 23093611 DOI: 10.1093/Bioinformatics/Bts628 |
0.709 |
|
| 2012 |
Martinez-Avila O, Wu S, Kim SJ, Cheng Y, Khan F, Samudrala R, Sali A, Horst JA, Habelitz S. Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils. Biomacromolecules. 13: 3494-502. PMID 22974364 DOI: 10.1021/Bm300942C |
0.302 |
|
| 2012 |
Wu S, Avila-Sakar A, Kim J, Booth DS, Greenberg CH, Rossi A, Liao M, Li X, Alian A, Griner SL, Juge N, Yu Y, Mergel CM, Chaparro-Riggers J, Strop P, ... ... Cheng Y, et al. Fabs enable single particle cryoEM studies of small proteins. Structure (London, England : 1993). 20: 582-92. PMID 22483106 DOI: 10.1016/J.Str.2012.02.017 |
0.779 |
|
| 2011 |
Martinez-Avila OM, Wu S, Cheng Y, Lee R, Khan F, Habelitz S. Self-assembly of amelogenin proteins at the water-oil interface. European Journal of Oral Sciences. 119: 75-82. PMID 22243231 DOI: 10.1111/J.1600-0722.2011.00907.X |
0.309 |
|
| 2011 |
Booth DS, Avila-Sakar A, Cheng Y. Visualizing proteins and macromolecular complexes by negative stain EM: from grid preparation to image acquisition. Journal of Visualized Experiments : Jove. PMID 22215030 DOI: 10.3791/3227 |
0.657 |
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| 2011 |
He X, Wu S, Martinez-Avila O, Cheng Y, Habelitz S. Self-aligning amelogenin nanoribbons in oil-water system. Journal of Structural Biology. 174: 203-12. PMID 21134461 DOI: 10.1016/J.Jsb.2010.11.027 |
0.347 |
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| 2011 |
Kim HM, Yu Y, Cheng Y. Structure characterization of the 26S proteasome. Biochimica Et Biophysica Acta. 1809: 67-79. PMID 20800708 DOI: 10.1016/J.Bbagrm.2010.08.008 |
0.375 |
|
| 2010 |
Hite RK, Schenk AD, Li Z, Cheng Y, Walz T. Collecting electron crystallographic data of two-dimensional protein crystals. Methods in Enzymology. 481: 251-82. PMID 20887861 DOI: 10.1016/S0076-6879(10)81011-0 |
0.738 |
|
| 2010 |
Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proceedings of the National Academy of Sciences of the United States of America. 107: 12481-6. PMID 20616058 DOI: 10.1073/Pnas.1007022107 |
0.736 |
|
| 2010 |
Li X, Grigorieff N, Cheng Y. GPU-enabled FREALIGN: accelerating single particle 3D reconstruction and refinement in Fourier space on graphics processors. Journal of Structural Biology. 172: 407-12. PMID 20558298 DOI: 10.1016/J.Jsb.2010.06.010 |
0.338 |
|
| 2010 |
Yu Y, Smith DM, Kim HM, Rodriguez V, Goldberg AL, Cheng Y. Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions. The Embo Journal. 29: 692-702. PMID 20019667 DOI: 10.1038/Emboj.2009.382 |
0.377 |
|
| 2010 |
Lenassi M, Cagney G, Liao M, Vaupotic T, Bartholomeeusen K, Cheng Y, Krogan NJ, Plemenitas A, Peterlin BM. HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic (Copenhagen, Denmark). 11: 110-22. PMID 19912576 DOI: 10.1111/J.1600-0854.2009.01006.X |
0.638 |
|
| 2010 |
Li Z, Hite RK, Cheng Y, Walz T. Evaluation of imaging plates as recording medium for images of negatively stained single particles and electron diffraction patterns of two-dimensional crystals. Journal of Electron Microscopy. 59: 53-63. PMID 19643814 DOI: 10.1093/Jmicro/Dfp036 |
0.73 |
|
| 2010 |
Racki LR, Narlikar GJ, Cooke R, Naber N, Purcell TJ, Yang JG, Cheng Y, Acevedo A, Partensky P. The Chromatin-Remodeling Complex ACF Functions as a Dimeric Motor to Space Nucleosomes Biophysical Journal. 98: 476a. DOI: 10.1016/J.Bpj.2009.12.2595 |
0.349 |
|
| 2009 |
Racki LR, Yang JG, Naber N, Partensky PD, Acevedo A, Purcell TJ, Cooke R, Cheng Y, Narlikar GJ. The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature. 462: 1016-21. PMID 20033039 DOI: 10.1038/Nature08621 |
0.322 |
|
| 2009 |
Cheng Y, Walz T. The advent of near-atomic resolution in single-particle electron microscopy. Annual Review of Biochemistry. 78: 723-42. PMID 19489732 DOI: 10.1146/Annurev.Biochem.78.070507.140543 |
0.579 |
|
| 2009 |
Cheng Y. Toward an atomic model of the 26S proteasome Current Opinion in Structural Biology. 19: 203-208. PMID 19286367 DOI: 10.1016/J.Sbi.2009.02.004 |
0.385 |
|
| 2008 |
Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y. Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases. Molecular Cell. 30: 360-8. PMID 18471981 DOI: 10.1016/J.Molcel.2008.03.004 |
0.359 |
|
| 2008 |
Ballister ER, Lai AH, Zuckermann RN, Cheng Y, Mougous JD. In vitro self-assembly of tailorable nanotubes from a simple protein building block. Proceedings of the National Academy of Sciences of the United States of America. 105: 3733-8. PMID 18310321 DOI: 10.1073/Pnas.0712247105 |
0.312 |
|
| 2008 |
Gonen T, Hite RK, Cheng Y, Petre BM, Kistler J, Walz T. Polymorphic assemblies and crystalline arrays of lens tetraspanin MP20. Journal of Molecular Biology. 376: 380-92. PMID 18166196 DOI: 10.1016/J.Jmb.2007.09.001 |
0.788 |
|
| 2007 |
Ohi MD, Feoktistova A, Ren L, Yip C, Cheng Y, Chen JS, Yoon HJ, Wall JS, Huang Z, Penczek PA, Gould KL, Walz T. Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1. Molecular Cell. 28: 871-85. PMID 18082611 DOI: 10.1016/J.Molcel.2007.10.003 |
0.674 |
|
| 2007 |
Smith DM, Chang SC, Park S, Finley D, Cheng Y, Goldberg AL. Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry. Molecular Cell. 27: 731-44. PMID 17803938 DOI: 10.1016/J.Molcel.2007.06.033 |
0.306 |
|
| 2007 |
Cheng Y, Walz T. Reconstructing the endocytotic machinery. Methods in Cell Biology. 79: 463-87. PMID 17327169 DOI: 10.1016/S0091-679X(06)79018-5 |
0.604 |
|
| 2007 |
Cheng Y, Boll W, Kirchhausen T, Harrison SC, Walz T. Cryo-electron tomography of clathrin-coated vesicles: structural implications for coat assembly. Journal of Molecular Biology. 365: 892-9. PMID 17095010 DOI: 10.1016/J.Jmb.2006.10.036 |
0.525 |
|
| 2007 |
Cheng Y, Boll W, Kirchhausen T, Harrison S, Walz T. Visualization of Clathrin-coated Vesicles by Cryo-electron Tomography Microscopy and Microanalysis. 13. DOI: 10.1017/S143192760707198X |
0.495 |
|
| 2006 |
Nishida N, Xie C, Shimaoka M, Cheng Y, Walz T, Springer TA. Activation of leukocyte beta2 integrins by conversion from bent to extended conformations. Immunity. 25: 583-94. PMID 17045822 DOI: 10.1016/J.Immuni.2006.07.016 |
0.492 |
|
| 2006 |
Fotin A, Kirchhausen T, Grigorieff N, Harrison SC, Walz T, Cheng Y. Structure determination of clathrin coats to subnanometer resolution by single particle cryo-electron microscopy. Journal of Structural Biology. 156: 453-60. PMID 16908193 DOI: 10.1016/J.Jsb.2006.07.001 |
0.593 |
|
| 2006 |
Nakagawa T, Cheng Y, Sheng M, Walz T. Three-dimensional structure of an AMPA receptor without associated stargazin/TARP proteins. Biological Chemistry. 387: 179-87. PMID 16497150 DOI: 10.1515/Bc.2006.024 |
0.542 |
|
| 2006 |
Cheng Y, Wolf E, Larvie M, Zak O, Aisen P, Grigorieff N, Harrison SC, Walz T. Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques. Journal of Molecular Biology. 355: 1048-65. PMID 16343539 DOI: 10.1016/J.Jmb.2005.11.021 |
0.572 |
|
| 2006 |
Gonen T, Cheng Y, Hiroaki Y, Fujiyoshi Y, Harrison S, Walz T. PL-6 Structure of the aquaporin-0 mediated membrane junction(Plenary Lecture,Abstract,Meeting Program of EABS & BSJ 2006) Seibutsu Butsuri. 46: S104. DOI: 10.2142/Biophys.46.S104_2 |
0.638 |
|
| 2006 |
Gonen T, Cheng Y, Sliz P, Hiroaki Y, Fujiyoshi Y, Harrison SC, Walz T. Erratum: Corrigendum: Lipid–protein interactions in double-layered two-dimensional AQP0 crystals Nature. 441: 248-248. DOI: 10.1038/Nature04775 |
0.658 |
|
| 2005 |
Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Single particle reconstruction of the human apo-transferrin-transferrin receptor complex. Journal of Structural Biology. 152: 204-10. PMID 16343946 DOI: 10.1016/J.Jsb.2005.10.006 |
0.545 |
|
| 2005 |
Smith DM, Kafri G, Cheng Y, Ng D, Walz T, Goldberg AL. ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins. Molecular Cell. 20: 687-98. PMID 16337593 DOI: 10.1016/J.Molcel.2005.10.019 |
0.567 |
|
| 2005 |
Gonen T, Cheng Y, Sliz P, Hiroaki Y, Fujiyoshi Y, Harrison SC, Walz T. Lipid-protein interactions in double-layered two-dimensional AQP0 crystals. Nature. 438: 633-8. PMID 16319884 DOI: 10.1038/Nature04321 |
0.677 |
|
| 2005 |
Nakagawa T, Cheng Y, Ramm E, Sheng M, Walz T. Structure and different conformational states of native AMPA receptor complexes. Nature. 433: 545-9. PMID 15690046 DOI: 10.1038/Nature03328 |
0.567 |
|
| 2004 |
Fotin A, Cheng Y, Grigorieff N, Walz T, Harrison SC, Kirchhausen T. Structure of an auxilin-bound clathrin coat and its implications for the mechanism of uncoating. Nature. 432: 649-53. PMID 15502813 DOI: 10.1038/Nature03078 |
0.557 |
|
| 2004 |
Fotin A, Cheng Y, Sliz P, Grigorieff N, Harrison SC, Kirchhausen T, Walz T. Molecular model for a complete clathrin lattice from electron cryomicroscopy. Nature. 432: 573-9. PMID 15502812 DOI: 10.1038/Nature03079 |
0.57 |
|
| 2004 |
Gonen T, Cheng Y, Kistler J, Walz T. Aquaporin-0 membrane junctions form upon proteolytic cleavage. Journal of Molecular Biology. 342: 1337-45. PMID 15351655 DOI: 10.1016/J.Jmb.2004.07.076 |
0.665 |
|
| 2004 |
Gonen T, Sliz P, Kistler J, Cheng Y, Walz T. Aquaporin-0 membrane junctions reveal the structure of a closed water pore. Nature. 429: 193-7. PMID 15141214 DOI: 10.1038/Nature02503 |
0.668 |
|
| 2004 |
Ohi M, Li Y, Cheng Y, Walz T. Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy. Biological Procedures Online. 6: 23-34. PMID 15103397 DOI: 10.1251/Bpo70 |
0.522 |
|
| 2004 |
Chen B, Cheng Y, Calder L, Harrison SC, Reinherz EL, Skehel JJ, Wiley DC. A chimeric protein of simian immunodeficiency virus envelope glycoprotein gp140 and Escherichia coli aspartate transcarbamoylase. Journal of Virology. 78: 4508-16. PMID 15078931 DOI: 10.1128/Jvi.78.9.4508-4516.2004 |
0.322 |
|
| 2004 |
Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Structure of the human transferrin receptor-transferrin complex. Cell. 116: 565-76. PMID 14980223 DOI: 10.1016/S0092-8674(04)00130-8 |
0.537 |
|
| 2004 |
Ohi M, Li Y, Cheng Y, Walz T. Negative staining and image classification - Powerful tools in modern electron microscopy Biological Procedures Online. 6: 23-34. DOI: 10.1251/bpo70 |
0.447 |
|
| 2001 |
Lederkremer GZ, Cheng Y, Petre BM, Vogan E, Springer S, Schekman R, Walz T, Kirchhausen T. Structure of the Sec23p/24p and Sec13p/31p complexes of COPII. Proceedings of the National Academy of Sciences of the United States of America. 98: 10704-9. PMID 11535824 DOI: 10.1073/Pnas.191359398 |
0.552 |
|
| 2000 |
Schmidt-Krey I, Mitsuoka K, Hirai T, Murata K, Cheng Y, Fujiyoshi Y, Morgenstern R, Hebert H. The three-dimensional map of microsomal glutathione transferase 1 at 6 A resolution. The Embo Journal. 19: 6311-6. PMID 11101503 DOI: 10.1093/Emboj/19.23.6311 |
0.335 |
|
| 1999 |
Schmidt-Krey I, Murata K, Hirai T, Mitsuoka K, Cheng Y, Morgenstern R, Fujiyoshi Y, Hebert H. The projection structure of the membrane protein microsomal glutathione transferase at 3 A resolution as determined from two-dimensional hexagonal crystals. Journal of Molecular Biology. 288: 243-53. PMID 10329140 DOI: 10.1006/Jmbi.1999.2683 |
0.329 |
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