| Year |
Citation |
Score |
| 2023 |
Pardo-De la Hoz CJ, Magain N, Piatkowski B, Cornet L, Dal Forno M, Carbone I, Miadlikowska J, Lutzoni F. Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-supported Phylogenomic Trees of Nostocalean Cyanobacteria. Systematic Biology. PMID 36827095 DOI: 10.1093/sysbio/syad008 |
0.354 |
|
| 2022 |
Pardo-De la Hoz CJ, Medeiros ID, Gibert JP, Chagnon PL, Magain N, Miadlikowska J, Lutzoni F. Phylogenetic structure of specialization: A new approach that integrates partner availability and phylogenetic diversity to quantify biotic specialization in ecological networks. Ecology and Evolution. 12: e8649. PMID 35261742 DOI: 10.1002/ece3.8649 |
0.306 |
|
| 2021 |
Medeiros ID, Mazur E, Miadlikowska J, Flakus A, Rodriguez-Flakus P, Pardo-De la Hoz CJ, Cieślak E, Śliwa L, Lutzoni F. Turnover of Lecanoroid Mycobionts and Their Photobionts Along an Elevation Gradient in Bolivia Highlights the Role of Environment in Structuring the Lichen Symbiosis. Frontiers in Microbiology. 12: 774839. PMID 34987486 DOI: 10.3389/fmicb.2021.774839 |
0.4 |
|
| 2021 |
Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, ... ... Lutzoni F, et al. Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes. The New Phytologist. PMID 34797921 DOI: 10.1111/nph.17873 |
0.308 |
|
| 2021 |
Cornet L, Magain N, Baurain D, Lutzoni F. Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria and cyanolichens. Molecular Phylogenetics and Evolution. 107100. PMID 33592234 DOI: 10.1016/j.ympev.2021.107100 |
0.311 |
|
| 2020 |
Haridas S, Albert R, Binder M, Bloem J, LaButti K, Salamov A, Andreopoulos B, Baker SE, Barry K, Bills G, Bluhm BH, Cannon C, Castanera R, Culley DE, Daum C, ... ... Lutzoni F, et al. 101 genomes: A test case for predicting lifestyles and emergence of pathogens. Studies in Mycology. 96: 141-153. PMID 32206138 DOI: 10.1016/J.Simyco.2020.01.003 |
0.461 |
|
| 2019 |
U'Ren JM, Lutzoni F, Miadlikowska J, Zimmerman NB, Carbone I, May G, Arnold AE. Host availability drives distributions of fungal endophytes in the imperilled boreal realm. Nature Ecology & Evolution. PMID 31548643 DOI: 10.1038/S41559-019-0975-2 |
0.361 |
|
| 2019 |
Armaleo D, Müller O, Lutzoni F, Andrésson ÓS, Blanc G, Bode HB, Collart FR, Dal Grande F, Dietrich F, Grigoriev IV, Joneson S, Kuo A, Larsen PE, Logsdon JM, Lopez D, et al. The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata. Bmc Genomics. 20: 605. PMID 31337355 DOI: 10.1186/S12864-019-5629-X |
0.78 |
|
| 2019 |
Chen KH, Liao HL, Bellenger JP, Lutzoni F. Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scoparium. Environmental Microbiology. PMID 30900793 DOI: 10.1111/1462-2920.14605 |
0.36 |
|
| 2019 |
Flakus A, Etayo J, Miadlikowska J, Lutzoni F, Kukwa M, Matura N, Rodriguez-Flakus P. Biodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi Plant and Fungal Systematics. 64: 283-344. DOI: 10.2478/pfs-2019-0022 |
0.324 |
|
| 2019 |
Chagnon P, Magain N, Miadlikowska J, Lutzoni F. Species diversification and phylogenetically constrained symbiont switching generated high modularity in the lichen genus
Peltigera Journal of Ecology. 107: 1645-1661. DOI: 10.1111/1365-2745.13207 |
0.434 |
|
| 2018 |
Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Arnold AE, Lewis LA, Swofford DL, Hibbett D, Hilu K, James TY, Quandt D, Magallón S. Contemporaneous radiations of fungi and plants linked to symbiosis. Nature Communications. 9: 5451. PMID 30575731 DOI: 10.1038/S41467-018-07849-9 |
0.773 |
|
| 2018 |
Pardo-De la Hoz CJ, Magain N, Lutzoni F, Goward T, Restrepo S, Miadlikowska J. Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus . Frontiers in Microbiology. 9: 2770. PMID 30505297 DOI: 10.3389/Fmicb.2018.02770 |
0.442 |
|
| 2018 |
Korotkin HB, Swenie RA, Miettinen O, Budke JM, Chen KH, Lutzoni F, Smith ME, Matheny PB. Stable isotope analyses reveal previously unknown trophic mode diversity in the Hymenochaetales. American Journal of Botany. PMID 30368779 DOI: 10.1002/Ajb2.1183 |
0.339 |
|
| 2018 |
Chagnon PL, Magain N, Miadlikowska J, Lutzoni F. Strong specificity and network modularity at a very fine phylogenetic scale in the lichen genus Peltigera. Oecologia. 187: 767-782. PMID 29761320 DOI: 10.1007/S00442-018-4159-6 |
0.369 |
|
| 2018 |
Chen KH, Liao HL, Arnold AE, Bonito G, Lutzoni F. RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungi. The New Phytologist. PMID 29604236 DOI: 10.1111/Nph.15092 |
0.606 |
|
| 2018 |
Magain N, Miadlikowska J, Goffinet B, Sérusiaux E, Lutzoni F. Macroevolution of Specificity in Cyanolichens of the Genus Peltigera Section Polydactylon (Lecanoromycetes, Ascomycota). Systematic Biology. 66: 74-99. PMID 28173598 DOI: 10.1093/Sysbio/Syw065 |
0.494 |
|
| 2018 |
Miadlikowska J, Magain N, Pardo-De la Hoz CJ, Niu D, Goward T, Sérusiaux E, Lutzoni F. Species in section Peltidea (aphthosa group) of the genus Peltigera remain cryptic after molecular phylogenetic revision Plant and Fungal Systematics. 63: 45-64. DOI: 10.2478/pfs-2018-0007 |
0.311 |
|
| 2018 |
Magain N, Truong C, Goward T, Niu D, Goffinet B, Sérusiaux E, Vitikainen O, Lutzoni F, Miadlikowska J. Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in Peltigera section Peltigera (lichenized Ascomycota: Lecanoromycetes) Taxon. 67: 836-870. DOI: 10.12705/675.3 |
0.395 |
|
| 2018 |
KAUFF F, BACHRAN A, SCHULTZ M, HOFSTETTER V, LUTZONI F, BÜDEL B. Molecular data favours a monogenericPeltulaceae(Lichinomycetes) The Lichenologist. 50: 313-327. DOI: 10.1017/S0024282918000105 |
0.445 |
|
| 2017 |
Magain N, Miadlikowska J, Mueller O, Gajdeczka M, Truong C, Salamov AA, Dubchak I, Grigoriev IV, Goffinet B, Sérusiaux E, Lutzoni F. Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon. Molecular Phylogenetics and Evolution. PMID 28860010 DOI: 10.1016/J.Ympev.2017.08.013 |
0.488 |
|
| 2017 |
HEIðMARSSON S, GUEIDAN C, MIADLIKOWSKA J, LUTZONI F. Multi-locus phylogeny supports the placement of Endocarpon pulvinatum within Staurothele s. str. (lichenised ascomycetes, Eurotiomycetes, Verrucariaceae) Phytotaxa. 306: 37. DOI: 10.11646/Phytotaxa.306.1.3 |
0.721 |
|
| 2016 |
Carbone I, White JB, Miadlikowska J, Elizabeth Arnold A, Miller MA, Kauff F, U'Ren JM, May G, Lutzoni F. T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads, and metadata visualization: an example with the Pezizomycotina tree of life. Bioinformatics (Oxford, England). PMID 28003260 DOI: 10.1093/Bioinformatics/Btw808 |
0.412 |
|
| 2016 |
Darnajoux R, Zhang X, McRose DL, Miadlikowska J, Lutzoni F, Kraepiel AM, Bellenger JP. Biological nitrogen fixation by alternative nitrogenases in boreal cyanolichens: importance of molybdenum availability and implications for current biological nitrogen fixation estimates. The New Phytologist. PMID 27588707 DOI: 10.1111/Nph.14166 |
0.336 |
|
| 2016 |
U'Ren JM, Miadlikowska J, Zimmerman NB, Lutzoni F, Stajich JE, Elizabeth Arnold A. Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Molecular Phylogenetics and Evolution. PMID 26903035 DOI: 10.1016/J.Ympev.2016.02.010 |
0.516 |
|
| 2016 |
Magain N, Sérusiaux E, Zhurbenko MP, Lutzoni F, Miadlikowska J. Disentangling thePeltigera polydactylonSpecies Complex by Recognizing Two New Taxa,P. polydactylonsubsp.udegheandP. seneca Herzogia. 29: 514-528. DOI: 10.13158/Heia.29.2.2016.514 |
0.384 |
|
| 2016 |
HESTMARK G, LUTZONI F, MIADLIKOWSKA J. Photobiont associations in co-occurring umbilicate lichens with contrasting modes of reproduction in coastal Norway The Lichenologist. 48: 545-557. DOI: 10.1017/S0024282916000232 |
0.398 |
|
| 2015 |
Oono R, Lefèvre E, Simha A, Lutzoni F. A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda). Fungal Biology. 119: 917-28. PMID 26399186 DOI: 10.1016/J.Funbio.2015.07.003 |
0.361 |
|
| 2015 |
Gaya E, Fernández-Brime S, Vargas R, Lachlan RF, Gueidan C, Ramírez-Mejía M, Lutzoni F. The adaptive radiation of lichen-forming Teloschistaceae is associated with sunscreening pigments and a bark-to-rock substrate shift. Proceedings of the National Academy of Sciences of the United States of America. 112: 11600-5. PMID 26324894 DOI: 10.1073/Pnas.1507072112 |
0.675 |
|
| 2015 |
Chen KH, Miadlikowska J, Molnár K, Arnold AE, U'Ren JM, Gaya E, Gueidan C, Lutzoni F. Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales. Molecular Phylogenetics and Evolution. 85: 117-30. PMID 25701073 DOI: 10.1016/J.Ympev.2015.01.008 |
0.738 |
|
| 2015 |
Gueidan C, Hill DJ, Miadlikowska J, Lutzoni F. Pezizomycotina: Lecanoromycetes The Mycota: a Comprehensive Treatise On Fungi as Experimental Systems For Basic and Applied Research: Vii Systematics and Evolution Part B 2nd Edition. 89-120. DOI: 10.1007/978-3-662-46011-5_4 |
0.578 |
|
| 2014 |
Oono R, Lutzoni F, Arnold AE, Kaye L, U'Ren JM, May G, Carbone I. Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species. American Journal of Botany. 101: 1362-74. PMID 25156984 DOI: 10.3732/Ajb.1400141 |
0.371 |
|
| 2014 |
Miadlikowska J, Richardson D, Magain N, Ball B, Anderson F, Cameron R, Lendemer J, Truong C, Lutzoni F. Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes). American Journal of Botany. 101: 1141-1156. PMID 25016011 DOI: 10.3732/Ajb.1400267 |
0.484 |
|
| 2014 |
Miadlikowska J, Kauff F, Högnabba F, Oliver JC, Molnár K, Fraker E, Gaya E, Hafellner J, Hofstetter V, Gueidan C, Otálora MA, Hodkinson B, Kukwa M, Lücking R, Björk C, ... ... Lutzoni F, et al. A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution. 79: 132-68. PMID 24747130 DOI: 10.1016/J.Ympev.2014.04.003 |
0.822 |
|
| 2014 |
Hodkinson BP, Allen JL, Forrest LL, Goffinet B, Sérusiaux E, Andrésson OS, Miao V, Bellenger JP, Lutzoni F. Lichen-symbiotic cyanobacteria associated with Peltigera have an alternative vanadium-dependent nitrogen fixation system European Journal of Phycology. 49: 11-19. DOI: 10.1080/09670262.2013.873143 |
0.692 |
|
| 2013 |
McDonald TR, Mueller O, Dietrich FS, Lutzoni F. High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family. Bmc Genomics. 14: 225. PMID 23557360 DOI: 10.1186/1471-2164-14-225 |
0.75 |
|
| 2013 |
O'Brien HE, Miadlikowska J, Lutzoni F. Assessing population structure and host specialization in lichenized cyanobacteria. The New Phytologist. 198: 557-66. PMID 23406441 DOI: 10.1111/Nph.12165 |
0.728 |
|
| 2013 |
Fernández-Brime S, Llimona X, Lutzoni F, Gaya E. Phylogenetic study of Diploschistes (lichen-forming Ascomycota: Ostropales: Graphidaceae), based on morphological, chemical, and molecular data Taxon. 62: 267-280. DOI: 10.12705/622.10 |
0.408 |
|
| 2013 |
McDonald TR, Gaya E, Lutzoni F. Twenty-five cultures of lichenizing fungi available for experimental studies on symbiotic systems Symbiosis. 59: 165-171. DOI: 10.1007/S13199-013-0228-0 |
0.729 |
|
| 2012 |
Gazis R, Miadlikowska J, Lutzoni F, Arnold AE, Chaverri P. Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes. Molecular Phylogenetics and Evolution. 65: 294-304. PMID 22772026 DOI: 10.1016/J.Ympev.2012.06.019 |
0.482 |
|
| 2012 |
U'Ren JM, Lutzoni F, Miadlikowska J, Laetsch AD, Arnold AE. Host and geographic structure of endophytic and endolichenic fungi at a continental scale. American Journal of Botany. 99: 898-914. PMID 22539507 DOI: 10.3732/Ajb.1100459 |
0.413 |
|
| 2012 |
Geml J, Kauff F, Brochmann C, Lutzoni F, Laursen GA, Redhead SA, Taylor DL. Frequent circumarctic and rare transequatorial dispersals in the lichenised agaric genus Lichenomphalia (Hygrophoraceae, Basidiomycota). Fungal Biology. 116: 388-400. PMID 22385621 DOI: 10.1016/J.Funbio.2011.12.009 |
0.493 |
|
| 2012 |
Gaya E, Högnabba F, Holguin A, Molnar K, Fernández-Brime S, Stenroos S, Arup U, Søchting U, Van den Boom P, Lücking R, Sipman HJ, Lutzoni F. Implementing a cumulative supermatrix approach for a comprehensive phylogenetic study of the Teloschistales (Pezizomycotina, Ascomycota). Molecular Phylogenetics and Evolution. 63: 374-87. PMID 22306043 DOI: 10.1016/J.Ympev.2012.01.012 |
0.528 |
|
| 2012 |
Prieto M, MartÃnez I, Aragón G, Gueidan C, Lutzoni F. Molecular phylogeny of Heteroplacidium, Placidium, and related catapyrenioid genera (Verrucariaceae, lichen-forming Ascomycota). American Journal of Botany. 99: 23-35. PMID 22210842 DOI: 10.3732/Ajb.1100239 |
0.714 |
|
| 2012 |
Hodkinson BP, Gottel NR, Schadt CW, Lutzoni F. Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome. Environmental Microbiology. 14: 147-61. PMID 21906220 DOI: 10.1111/J.1462-2920.2011.02560.X |
0.706 |
|
| 2012 |
McDonald TR, Dietrich FS, Lutzoni F. Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification. Molecular Biology and Evolution. 29: 51-60. PMID 21680869 DOI: 10.1093/Molbev/Msr123 |
0.756 |
|
| 2012 |
Liwa L, Miadlikowska J, Redelings BD, Molnar K, Lutzoni F. Are widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic? Bryologist. 115: 265-277. DOI: 10.1639/0007-2745-115.2.265 |
0.342 |
|
| 2011 |
Schmull M, Miadlikowska J, Pelzer M, Stocker-Wörgötter E, Hofstetter V, Fraker E, Hodkinson BP, Reeb V, Kukwa M, Lumbsch HT, Kauff F, Lutzoni F. Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota). Mycologia. 103: 983-1003. PMID 21642348 DOI: 10.3852/10-234 |
0.838 |
|
| 2011 |
Fernández-Brime S, Llimona X, Molnar K, Stenroos S, Högnabba F, Björk C, Lutzoni F, Gaya E. Expansion of the Stictidaceae by the addition of the saxicolous lichen-forming genus Ingvariella. Mycologia. 103: 755-63. PMID 21471292 DOI: 10.3852/10-287 |
0.373 |
|
| 2011 |
Gaya E, Redelings BD, Navarro-Rosinés P, Llimona X, De Cáceres M, Lutzoni F. Align or not to align? Resolving species complexes within the Caloplaca saxicola group as a case study. Mycologia. 103: 361-78. PMID 21139031 DOI: 10.3852/10-120 |
0.32 |
|
| 2011 |
Hestmark G, Miadlikowska J, Kauff F, Fraker E, Molnar K, Lutzoni F. Single origin and subsequent diversification of central Andean endemic Umbilicaria species. Mycologia. 103: 45-56. PMID 20943548 DOI: 10.3852/10-012 |
0.474 |
|
| 2011 |
Joneson S, Armaleo D, Lutzoni F. Fungal and algal gene expression in early developmental stages of lichen-symbiosis. Mycologia. 103: 291-306. PMID 20943535 DOI: 10.3852/10-064 |
0.79 |
|
| 2011 |
Miadlikowska J, Schoch CL, Kageyama SA, Molnar K, Lutzoni F, McCune B. Hypogymnia phylogeny, including Cavernularia, reveals biogeographic structure Bryologist. 114: 392-400. DOI: 10.1639/0007-2745-114.2.392 |
0.48 |
|
| 2011 |
Thüs H, Muggia L, Pérez-Ortega S, Favero-Longo SE, Joneson S, O’Brien H, Nelsen MP, Duque-Thüs R, Grube M, Friedl T, Brodie J, Andrew CJ, Lücking R, Lutzoni F, Gueidan C. Revisiting photobiont diversity in the lichen family Verrucariaceae (Ascomycota) European Journal of Phycology. 46: 399-415. DOI: 10.1080/09670262.2011.629788 |
0.8 |
|
| 2010 |
U'ren JM, Lutzoni F, Miadlikowska J, Arnold AE. Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens. Microbial Ecology. 60: 340-53. PMID 20625714 DOI: 10.1007/S00248-010-9698-2 |
0.399 |
|
| 2010 |
Otálora MA, MartÃnez I, O'Brien H, Molina MC, Aragón G, Lutzoni F. Multiple origins of high reciprocal symbiotic specificity at an intercontinental spatial scale among gelatinous lichens (Collemataceae, Lecanoromycetes). Molecular Phylogenetics and Evolution. 56: 1089-95. PMID 20493269 DOI: 10.1016/J.Ympev.2010.05.013 |
0.776 |
|
| 2010 |
Prieto M, MartÃnez I, Aragón G, Otálora MA, Lutzoni F. Phylogenetic study of Catapyrenium s. str. (Verrucariaceae, lichen-forming Ascomycota) and related genus Placidiopsis. Mycologia. 102: 291-304. PMID 20361497 DOI: 10.3852/09-168 |
0.486 |
|
| 2010 |
Otálora MA, Aragón G, Molina MC, MartÃnez I, Lutzoni F. Disentangling the Collema-Leptogium complex through a molecular phylogenetic study of the Collemataceae (Peltigerales, lichen-forming Ascomycota). Mycologia. 102: 279-90. PMID 20361496 DOI: 10.3852/09-114 |
0.423 |
|
| 2010 |
Crespo A, Kauff F, Divakar PK, del Prado R, Pérez-Ortega S, de Paz GA, Ferencova Z, Blanco O, Roca-Valiente B, Núñez-Zapata J, Cubas P, Argüello A, Elix JA, Esslinger TL, Hawksworth DL, ... ... Lutzoni F, et al. Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence Taxon. 59: 1735-1753. DOI: 10.1002/Tax.596008 |
0.476 |
|
| 2009 |
Arnold AE, Miadlikowska J, Higgins KL, Sarvate SD, Gugger P, Way A, Hofstetter V, Kauff F, Lutzoni F. A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification? Systematic Biology. 58: 283-97. PMID 20525584 DOI: 10.1093/Sysbio/Syp001 |
0.437 |
|
| 2009 |
Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, ... ... Lutzoni F, et al. The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Systematic Biology. 58: 224-39. PMID 20525580 DOI: 10.1093/Sysbio/Syp020 |
0.819 |
|
| 2009 |
Ruibal C, Gueidan C, Selbmann L, Gorbushina AA, Crous PW, Groenewald JZ, Muggia L, Grube M, Isola D, Schoch CL, Staley JT, Lutzoni F, de Hoog GS. Phylogeny of rock-inhabiting fungi related to Dothideomycetes. Studies in Mycology. 64: 123-133S7. PMID 20169026 DOI: 10.3114/Sim.2009.64.06 |
0.717 |
|
| 2009 |
McLaughlin DJ, Hibbett DS, Lutzoni F, Spatafora JW, Vilgalys R. The search for the fungal tree of life. Trends in Microbiology. 17: 488-97. PMID 19782570 DOI: 10.1016/J.Tim.2009.08.001 |
0.772 |
|
| 2009 |
O'Brien HE, Miadlikowska J, Lutzoni F. Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genus peltigera. Evolution; International Journal of Organic Evolution. 63: 2076-86. PMID 19453383 DOI: 10.1111/J.1558-5646.2009.00685.X |
0.765 |
|
| 2009 |
Ertz D, Miadlikowska J, Lutzoni F, Dessein S, Raspé O, Vigneron N, Hofstetter V, Diederich P. Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha. Mycological Research. 113: 141-52. PMID 18929650 DOI: 10.1016/J.Mycres.2008.09.002 |
0.496 |
|
| 2009 |
Hodkinson BP, Lutzoni F. A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales Symbiosis. 49: 163-180. DOI: 10.1007/S13199-009-0049-3 |
0.717 |
|
| 2009 |
Joneson S, Lutzoni F. Compatibility and thigmotropism in the lichen symbiosis: A reappraisal Symbiosis. 47: 109-115. DOI: 10.1007/Bf03182294 |
0.764 |
|
| 2009 |
Gueidan C, Savić S, Thüs H, Roux C, Keller C, Tibell L, Prieto M, Heiomarsson S, Breuss O, Orange A, Fröberg L, Wynns AA, Navarro-Rosinés P, Krzewicka B, Pykälä J, ... ... Lutzoni F, et al. Generic classification of the Verrucariaceae (Ascomycota) based on molecular and morphological evidence: Recent progress and remaining challenges Taxon. 58: 184-208. DOI: 10.1002/Tax.581019 |
0.684 |
|
| 2008 |
Gueidan C, Villaseñor CR, de Hoog GS, Gorbushina AA, Untereiner WA, Lutzoni F. A rock-inhabiting ancestor for mutualistic and pathogen-rich fungal lineages. Studies in Mycology. 61: 111-9. PMID 19287533 DOI: 10.3114/Sim.2008.61.11 |
0.682 |
|
| 2008 |
Savi? S, Tibell L, Gueidan C, Lutzoni F. Molecular phylogeny and systematics of Polyblastia (Verrucariaceae, Eurotiomycetes) and allied genera. Mycological Research. 112: 1307-18. PMID 18945603 DOI: 10.1016/J.Mycres.2008.05.002 |
0.74 |
|
| 2008 |
Gaya E, Navarro-Rosinés P, Llimona X, Hladun N, Lutzoni F. Phylogenetic reassessment of the Teloschistaceae (lichen-forming Ascomycota, Lecanoromycetes). Mycological Research. 112: 528-46. PMID 18406120 DOI: 10.1016/J.Mycres.2007.11.005 |
0.505 |
|
| 2008 |
Amtoft A, Lutzoni F, Miadlikowska J. Dermatocarpon (Verrucariaceae) in the Ozark Highlands, North America Bryologist. 111: 1-40. DOI: 10.1639/0007-2745(2008)111[1:Dvitoh]2.0.Co;2 |
0.359 |
|
| 2008 |
Otálora MAG, Martínez I, Molina MC, Aragón G, Lutzoni F. Phylogenetic relationships and taxonomy of the Leptogium lichenoides group (Collemataceae, Ascomycota) in Europe Taxon. 57: 907-921. DOI: 10.1002/Tax.573019 |
0.335 |
|
| 2007 |
Gueidan C, Roux C, Lutzoni F. Using a multigene phylogenetic analysis to assess generic delineation and character evolution in Verrucariaceae (Verrucariales, Ascomycota). Mycological Research. 111: 1145-68. PMID 17981450 DOI: 10.1016/J.Mycres.2007.08.010 |
0.729 |
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| 2007 |
Arnold AE, Henk DA, Eells RL, Lutzoni F, Vilgalys R. Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia. 99: 185-206. PMID 17682771 DOI: 10.3852/Mycologia.99.2.185 |
0.8 |
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| 2007 |
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, et al. A higher-level phylogenetic classification of the Fungi. Mycological Research. 111: 509-47. PMID 17572334 DOI: 10.1016/J.Mycres.2007.03.004 |
0.806 |
|
| 2007 |
Kauff F, Cox CJ, Lutzoni F. WASABI: an automated sequence processing system for multigene phylogenies. Systematic Biology. 56: 523-31. PMID 17562476 DOI: 10.1080/10635150701395340 |
0.415 |
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| 2007 |
Arnold AE, Lutzoni F. Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology. 88: 541-9. PMID 17503580 DOI: 10.1890/05-1459 |
0.449 |
|
| 2007 |
Rydholm C, Dyer PS, Lutzoni F. DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri. Eukaryotic Cell. 6: 868-74. PMID 17384199 DOI: 10.1128/Ec.00319-06 |
0.779 |
|
| 2007 |
Reeb V, Haugen P, Bhattacharya D, Lutzoni F. Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease. Journal of Molecular Evolution. 64: 285-98. PMID 17294323 DOI: 10.1007/S00239-005-0179-Z |
0.762 |
|
| 2007 |
Hofstetter V, Miadlikowska J, Kauff F, Lutzoni F. Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota). Molecular Phylogenetics and Evolution. 44: 412-26. PMID 17207641 DOI: 10.1016/J.Ympev.2006.10.016 |
0.465 |
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| 2007 |
Higgins KL, Arnold AE, Miadlikowska J, Sarvate SD, Lutzoni F. Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages. Molecular Phylogenetics and Evolution. 42: 543-55. PMID 17005421 DOI: 10.1016/J.Ympev.2006.07.012 |
0.466 |
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| 2007 |
Litaker RW, Vandersea MW, Kibler SR, Reece KS, Stokes NA, Lutzoni FM, Yonish BA, West MA, Black MND, Tester PA. Recognizing dinoflagellate species using its rDNA sequences Journal of Phycology. 43: 344-355. DOI: 10.1111/J.1529-8817.2007.00320.X |
0.38 |
|
| 2006 |
Miadlikowska J, Kauff F, Hofstetter V, Fraker E, Grube M, Hafellner J, Reeb V, Hodkinson BP, Kukwa M, Lücking R, Hestmark G, Otalora MG, Rauhut A, Büdel B, Scheidegger C, ... ... Lutzoni F, et al. New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes. Mycologia. 98: 1088-103. PMID 17486983 DOI: 10.3852/Mycologia.98.6.1088 |
0.819 |
|
| 2006 |
Geiser DM, Gueidan C, Miadlikowska J, Lutzoni F, Kauff F, Hofstetter V, Fraker E, Schoch CL, Tibell L, Untereiner WA, Aptroot A. Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae. Mycologia. 98: 1053-64. PMID 17486980 DOI: 10.3852/Mycologia.98.6.1053 |
0.702 |
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| 2006 |
Spatafora JW, Sung GH, Johnson D, Hesse C, O'Rourke B, Serdani M, Spotts R, Lutzoni F, Hofstetter V, Miadlikowska J, Reeb V, Gueidan C, Fraker E, Lumbsch T, Lücking R, et al. A five-gene phylogeny of Pezizomycotina. Mycologia. 98: 1018-28. PMID 17486977 DOI: 10.3852/Mycologia.98.6.1018 |
0.83 |
|
| 2006 |
James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, ... ... Lutzoni F, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110 |
0.809 |
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| 2006 |
Fernández FA, Miller AN, Huhndorf SM, Lutzoni FM, Zoller S. Systematics of the genus Chaetosphaeria and its allied genera: morphological and phylogenetic diversity in north temperate and neotropical taxa. Mycologia. 98: 121-30. PMID 16800310 DOI: 10.3852/mycologia.98.1.121 |
0.438 |
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| 2006 |
Rydholm C, Szakacs G, Lutzoni F. Low genetic variation and no detectable population structure in aspergillus fumigatus compared to closely related Neosartorya species. Eukaryotic Cell. 5: 650-7. PMID 16607012 DOI: 10.1128/Ec.5.4.650-657.2006 |
0.766 |
|
| 2005 |
Bhattacharya D, Reeb V, Simon DM, Lutzoni F. Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA. Bmc Evolutionary Biology. 5: 68. PMID 16300679 DOI: 10.1186/1471-2148-5-68 |
0.743 |
|
| 2005 |
Paoletti M, Rydholm C, Schwier EU, Anderson MJ, Szakacs G, Lutzoni F, Debeaupuis JP, Latgé JP, Denning DW, Dyer PS. Evidence for sexuality in the opportunistic fungal pathogen Aspergillus fumigatus. Current Biology : Cb. 15: 1242-8. PMID 16005299 DOI: 10.1016/J.Cub.2005.05.045 |
0.783 |
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| 2005 |
O'Brien HE, Miadlikowska J, Lutzoni F. Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungus Peltigera European Journal of Phycology. 40: 363-378. DOI: 10.1080/09670260500342647 |
0.742 |
|
| 2004 |
Miadlikowska J, Lutzoni F. Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits. American Journal of Botany. 91: 449-64. PMID 21653401 DOI: 10.3732/Ajb.91.3.449 |
0.51 |
|
| 2004 |
Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/Ajb.91.10.1446 |
0.804 |
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| 2004 |
Reeb V, Lutzoni F, Roux C. Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Molecular Phylogenetics and Evolution. 32: 1036-60. PMID 15288074 DOI: 10.1016/J.Ympev.2004.04.012 |
0.792 |
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| 2004 |
Haugen P, Reeb V, Lutzoni F, Bhattacharya D. The evolution of homing endonuclease genes and group I introns in nuclear rDNA. Molecular Biology and Evolution. 21: 129-40. PMID 14595099 DOI: 10.1093/Molbev/Msh005 |
0.765 |
|
| 2003 |
Gaya E, Lutzoni F, Zoller S, Navarro-Rosinés P. Phylogenetic study of Fulgensia and allied Caloplaca and Xanthoria species (Teloschistaceae, lichen-forming ascomycota). American Journal of Botany. 90: 1095-103. PMID 21659209 DOI: 10.3732/Ajb.90.7.1095 |
0.49 |
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| 2003 |
Miadlikowska J, Lutzoni F, Goward T, Zoller S, Posada D. New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex. Mycologia. 95: 1181-203. PMID 21149020 DOI: 10.1080/15572536.2004.11833027 |
0.364 |
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| 2003 |
Søchting U, Lutzoni F. Molecular phylogenetic study at the generic boundary between the lichen-forming fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae). Mycological Research. 107: 1266-76. PMID 15000229 DOI: 10.1017/S0953756203008529 |
0.451 |
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| 2003 |
Zoller S, Lutzoni F. Slow algae, fast fungi: exceptionally high nucleotide substitution rate differences between lichenized fungi Omphalina and their symbiotic green algae Coccomyxa. Molecular Phylogenetics and Evolution. 29: 629-40. PMID 14615198 DOI: 10.1016/S1055-7903(03)00215-X |
0.355 |
|
| 2003 |
Alfaro ME, Zoller S, Lutzoni F. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution. 20: 255-66. PMID 12598693 DOI: 10.1093/Molbev/Msg028 |
0.326 |
|
| 2003 |
McDonald T, Miadlikowska J, Lutzoni F. The lichen genus Sticta in the Great Smoky Mountains: A phylogenetic study of morphological, chemical, and molecular data Bryologist. 106: 61-79. DOI: 10.1639/0007-2745(2003)106[0061:Tlgsit]2.0.Co;2 |
0.786 |
|
| 2002 |
Kauff F, Lutzoni F. Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. Molecular Phylogenetics and Evolution. 25: 138-56. PMID 12383757 DOI: 10.1016/S1055-7903(02)00214-2 |
0.38 |
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| 2002 |
Miadlikowska J, McCune B, Lutzoni F. Pseudocyphellaria perpetua, a new lichen from western North America Bryologist. 105: 1-10. DOI: 10.1639/0007-2745(2002)105[0001:Ppanlf]2.0.Co;2 |
0.455 |
|
| 2002 |
Redhead SA, Lutzoni F, Moncalvo JM, Vilgalys R. Phylogeny of agarics: Partial systematics solutions for core Omphalinoid genera in the Agaricales (Euagarics) Mycotaxon. 83: 19-57. |
0.454 |
|
| 2001 |
Lutzoni F, Pagel M, Reeb V. Major fungal lineages are derived from lichen symbiotic ancestors. Nature. 411: 937-40. PMID 11418855 DOI: 10.1038/35082053 |
0.798 |
|
| 2000 |
Moncalvo JM, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Systematic Biology. 49: 278-305. PMID 12118409 DOI: 10.1093/Sysbio/49.2.278 |
0.623 |
|
| 2000 |
Lutzoni F, Wagner P, Reeb V, Zoller S. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Systematic Biology. 49: 628-51. PMID 12116431 DOI: 10.1080/106351500750049743 |
0.754 |
|
| 2000 |
Bhattacharya D, Lutzoni F, Reeb V, Simon D, Nason J, Fernandez F. Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes. Molecular Biology and Evolution. 17: 1971-84. PMID 11110913 DOI: 10.1093/Oxfordjournals.Molbev.A026298 |
0.751 |
|
| 2000 |
Wu QX, Mueller GM, Lutzoni FM, Huang YQ, Guo SY. Phylogenetic and biogeographic relationships of eastern Asian and eastern North American disjunct Suillus species (fungi) as inferred from nuclear ribosomal RNA ITS sequences. Molecular Phylogenetics and Evolution. 17: 37-47. PMID 11020303 DOI: 10.1006/Mpev.2000.0812 |
0.314 |
|
| 2000 |
Miadlikowska J, Lutzoni F. Phylogenetic revision of the genus Peltigera (lichen-forming Ascomycota) based on morphological, chemical, and large subunit nuclear ribosomal DNA data International Journal of Plant Sciences. 161: 925-958. DOI: 10.1086/317568 |
0.477 |
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| 2000 |
Bhattacharya D, Lutzoni F, Reeb V, Simon D, Fernandez F, Friedl T. USING RDNA GENES TO UNDERSTAND THE ORIGIN AND EVOLUTION OF SPLICEOSOMAL AND GROUP I INTRONS Journal of Phycology. 36: 6-7. DOI: 10.1046/J.1529-8817.1999.00001-18.X |
0.768 |
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| 1999 |
Lutzoni F, Barker FK. Sampling confidence envelopes of phylogenetic trees for combinability testing: a reply to Rodrigo. Systematic Biology. 48: 596-603. PMID 12066295 DOI: 10.1080/106351599260166 |
0.306 |
|
| 1999 |
Zoller S, Lutzoni F, Scheidegger C. Genetic variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation. Molecular Ecology. 8: 2049-59. PMID 10632856 DOI: 10.1046/J.1365-294X.1999.00820.X |
0.329 |
|
| 1999 |
Lutzoni F, Ekman S. The Corticolous and Lignicolous Species of Bacidia and Bacidina in North America The Bryologist. 102: 165. DOI: 10.2307/3244494 |
0.404 |
|
| 1997 |
Lutzoni FM. Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets. Systematic Biology. 46: 373-406. PMID 11975328 |
0.338 |
|
| 1997 |
Lutzoni F, Pagel M. Accelerated evolution as a consequence of transitions to mutualism. Proceedings of the National Academy of Sciences of the United States of America. 94: 11422-7. PMID 11038586 DOI: 10.1073/Pnas.94.21.11422 |
0.334 |
|
| 1995 |
Lutzoni F, Vilgalys R. Integration of morphological and molecular data sets in estimating fungal phytogenies Canadian Journal of Botany. 73: 649-659. DOI: 10.1139/B95-307 |
0.628 |
|
| 1988 |
Sirois L, Lutzoni F, Grandtner MM. Les lichens sur serpentine et amphibolite du plateau du mont Albert, Gaspésie, Québec Canadian Journal of Botany. 66: 851-862. DOI: 10.1139/B88-124 |
0.358 |
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