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Walter Gilbert research assistant 1989-1992 Harvard (Chemistry Tree)
Patrick Gillevet research assistant 1989-1992 Harvard (Computational Biology Tree)
Cyrus H. Chothia grad student 1996 Cambridge (Chemistry Tree)
 (Molecular propinquity : evolutionary and structural relationships of proteins.)
Michael Levitt post-doc 1997-1999 Stanford (Chemistry Tree)


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Liana Faye Lareau grad student (FlyTree)
Richard E. Green grad student 2005 UC Berkeley
David A. Soergel grad student 2010 UC Berkeley
Anting Xu grad student 2013 UC Berkeley
BETA: Related publications


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Chandonia JM, Fox NK, Brenner SE. (2018) SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database. Nucleic Acids Research
Arkin AP, Cottingham RW, Henry CS, et al. (2018) KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 36: 566-569
Chandonia JM, Fox NK, Brenner SE. (2016) SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins - extended Database. Journal of Molecular Biology
Shatsky M, Dong M, Liu H, et al. (2016) Quantitative tagless co-purification: a method to validate and identify protein-protein interactions. Molecular & Cellular Proteomics : McP
Shatsky M, Allen S, Gold BL, et al. (2016) Bacterial interactomes: interacting protein partners share similar function and are validated in independent assays more frequently than previously reported. Molecular & Cellular Proteomics : McP
Caswell JL, Camarda R, Zhou AY, et al. (2015) Multiple breast cancer risk variants are associated with differential transcript isoform expression in tumors. Human Molecular Genetics
Fox NK, Brenner SE, Chandonia JM. (2015) The value of protein structure classification information-Surveying the scientific literature. Proteins. 83: 2025-38
Brooks AN, Duff MO, May G, et al. (2015) Regulation of alternative splicing in Drosophila by 56 RNA binding proteins. Genome Research
Bourne PE, Brenner SE, Eisen MB. (2015) Ten Years of PLoS‡ Computational Biology: A Decade of Appreciation and Innovation. Plos Computational Biology. 11: e1004317
Patel JP, Puck JM, Srinivasan R, et al. (2015) Nijmegen breakage syndrome detected by newborn screening for T cell receptor excision circles (TRECs). Journal of Clinical Immunology. 35: 227-33
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