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Adam P. Arkin

University of California, Berkeley, Berkeley, CA, United States 
cellular regulatory networks
"Adam Arkin"
Cross-listing: Chemistry Tree


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Douglas C. Youvan grad student 1992 MIT (Chemistry Tree)
 (An application of artificial intelligence and machine vision to protein engineering)
John Ross post-doc Stanford (Chemistry Tree)


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Sriram Kosuri research assistant (Chemistry Tree)
Leor S. Weinberger grad student 2004 UC Berkeley (Chemistry Tree)
Keith A. Erickson grad student 2005 UCSF (Chemistry Tree)
Serguei G. Plyasunov grad student 2005 UC Berkeley (Chemistry Tree)
Robin E. Osterhout grad student 2006 UC Berkeley (Chemistry Tree)
Timothy S. Ham grad student 2007 UCSF (Chemistry Tree)
John C. Burnett grad student 2008 UC Berkeley (Cell & Gene Therapy Tree)
Joshua A. Hug grad student 2011 UC Berkeley (Chemistry Tree)
Lei Stanley Qi grad student 2012 UC Berkeley (Chemistry Tree)
Weston R. Whitaker grad student 2012 UC Berkeley (Chemistry Tree)
Jonathan E. Foley grad student 2013 UC Berkeley (Cell & Gene Therapy Tree)
David Chen grad student 2014 UC Berkeley (Chemistry Tree)
Harneet Singh Rishi grad student 2014-2019 UC Berkeley / LBNL (Chemistry Tree)
Eric J. Alm post-doc UC Berkeley
John Christopher Anderson post-doc UC Berkeley/LBNL (Chemistry Tree)
Julius B. Lucks post-doc (Physics Tree)
Christopher A. Voigt post-doc UC Berkeley/LBNL (Chemistry Tree)
Chang C. Liu post-doc 2009-2012 UC Berkeley (Chemistry Tree)


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Paul David Adams collaborator UC Berkeley (Chemistry Tree)
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Ning D, Wang Y, Fan Y, et al. (2024) Environmental stress mediates groundwater microbial community assembly. Nature Microbiology
Paradis CJ, Miller JI, Moon JW, et al. (2021) Sustained ability of a natural microbial community to remove nitrate from groundwater. Ground Water
Kothari A, Roux S, Zhang H, et al. (2021) Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance. Msystems. e0053721
Lui LM, Majumder EL, Smith HJ, et al. (2021) Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology. Frontiers in Microbiology. 12: 642422
Qi LS, Larson MH, Gilbert LA, et al. (2021) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell. 184: 844
Ge X, Thorgersen MP, Poole FL, et al. (2020) Characterization of a Metal-Resistant Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation. Frontiers in Microbiology. 11: 587127
Ge X, Thorgersen MP, Poole FL, et al. (2020) Draft Genome Sequence of sp. Strain EB106-08-02-XG196, Isolated from High-Nitrate-Contaminated Sediment. Microbiology Resource Announcements. 9
Mutalik VK, Adler BA, Rishi HS, et al. (2020) High-throughput mapping of the phage resistance landscape in E. coli. Plos Biology. 18: e3000877
Kempher ML, Tao X, Song R, et al. (2020) Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature. Mbio. 11
Mejía-Almonte C, Busby SJW, Wade JT, et al. (2020) Redefining fundamental concepts of transcription initiation in bacteria. Nature Reviews. Genetics
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