Nikolaos G. Sgourakis, Ph.D.

Affiliations: 
2009 Rensselaer Polytechnic Institute, Troy, NY, United States 
Area:
General Biophysics, Molecular Biology
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"Nikolaos Sgourakis"

Parents

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Angel E. Garcia grad student 2009 RPI
 (Study of protein conformational and interaction dynamics by molecular dynamics simulations and nuclear magnetic resonance experiments.)
David Baker grad student 2010-2012 (Computational Biology Tree)
Ad Bax grad student 2012-2015 (Physics Tree)

Children

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Andrew McShan post-doc 2016- UC Santa Cruz
Scarlett A Dvorkin post-doc 2019-2020 (Chemistry Tree)
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Publications

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Nerli S, De Paula VS, McShan AC, et al. (2021) Backbone-independent NMR resonance assignments of methyl probes in large proteins. Nature Communications. 12: 691
Nerli S, Sgourakis NG. (2020) Structure-based modeling of SARS-CoV-2 peptide/HLA-A02 antigens. Biorxiv : the Preprint Server For Biology
Leman JK, Weitzner BD, Lewis SM, et al. (2020) Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods
Wei KY, Moschidi D, Bick MJ, et al. (2020) Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proceedings of the National Academy of Sciences of the United States of America
De Paula VS, Jude KM, Nerli S, et al. (2020) Interleukin-2 druggability is modulated by global conformational transitions controlled by a helical capping switch. Proceedings of the National Academy of Sciences of the United States of America
Park J, Selvaraj B, McShan AC, et al. (2019) De novo design of a homo-trimeric amantadine-binding protein. Elife. 8
McShan AC, Devlin CA, Overall SA, et al. (2019) Molecular determinants of chaperone interactions on MHC-I for folding and antigen repertoire selection. Proceedings of the National Academy of Sciences of the United States of America
Marceau AH, Brison CM, Nerli S, et al. (2019) An order-to-disorder structural switch activates the FoxM1 transcription factor. Elife. 8
Nerli S, Sgourakis NG. (2019) CS-ROSETTA. Methods in Enzymology. 614: 321-362
Chen Z, Boyken SE, Jia M, et al. (2019) Programmable design of orthogonal protein heterodimers. Nature. 565: 106-111
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