Allison Lopatkin
Affiliations: | 2017 | Biomedical Engineering | Duke University, Durham, NC |
| 2020-2023 | Biological Sciences | Barnard College, New York, NY, United States | |
| 2023- | Chemical Engineering | University of Rochester, Rochester, NY |
Area:
Systems biology, synthetic biology, computational biology, horizontal gene transfer, bacterial population dynamics, microbial metabolism, antibiotic resistanceWebsite:
https://lopatkinlab.com/index.htmlGoogle:
"Allison Lopatkin"
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Publications
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| Aduru SV, Szenkiel K, Rahman A, et al. (2024) Sub-inhibitory antibiotic treatment selects for enhanced metabolic efficiency. Microbiology Spectrum. e0324123 |
| Pajon C, Fortoul MC, Diaz-Tang G, et al. (2023) Interactions between metabolism and growth can determine the co-existence of and . Elife. 12 |
| Barraza I, Pajon C, Diaz-Tang G, et al. (2023) Disturbing the Spatial Organization of Biofilm Communities Affects Expression of -Regulated Virulence Factors in Staphylococcus aureus. Applied and Environmental Microbiology. e0193222 |
| Diaz-Tang G, Meneses EM, Patel K, et al. (2022) Growth productivity as a determinant of the inoculum effect for bactericidal antibiotics. Science Advances. 8: eadd0924 |
| Palomino A, Gewurz D, DeVine L, et al. (2022) Metabolic genes on conjugative plasmids are highly prevalent in Escherichia coli and can protect against antibiotic treatment. The Isme Journal |
| Wang T, Weiss A, Aqeel A, et al. (2022) Horizontal gene transfer enables programmable gene stability in synthetic microbiota. Nature Chemical Biology |
| Gomez-Simmonds A, Annavajhala MK, Tang N, et al. (2022) Population structure of blaKPC-harbouring IncN plasmids at a New York City medical centre and evidence for multi-species horizontal transmission. The Journal of Antimicrobial Chemotherapy |
| Lopatkin AJ, Yang JH. (2021) Digital Insights Into Nucleotide Metabolism and Antibiotic Treatment Failure. Frontiers in Digital Health. 3 |
| Prensky H, Gomez-Simmonds A, Uhlemann AC, et al. (2021) Conjugation dynamics depend on both the plasmid acquisition cost and the fitness cost. Molecular Systems Biology. 17: e9913 |
| Lopatkin AJ, Bening SC, Manson AL, et al. (2021) Clinically relevant mutations in core metabolic genes confer antibiotic resistance. Science (New York, N.Y.). 371 |