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Ovijit Chaudhuri - Publications

Affiliations: 
2009 University of California, San Francisco, San Francisco, CA 
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60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Blache U, Ford EM, Ha B, Rijns L, Chaudhuri O, Dankers PYW, Kloxin AM, Snedeker JG, Gentleman E. Engineered hydrogels for mechanobiology. Nature Reviews. Methods Primers. 2: 98. PMID 37461429 DOI: 10.1038/s43586-022-00179-7  0.302
2023 Adebowale K, Ha B, Saraswathibhatla A, Indana D, Popescu MC, Demirdjian S, Yang J, Bassik MC, Franck C, Bollyky PL, Chaudhuri O. Monocytes use protrusive forces to generate migration paths in viscoelastic collagen-based extracellular matrices. Biorxiv : the Preprint Server For Biology. PMID 37333226 DOI: 10.1101/2023.06.09.544394  0.344
2023 Saraswathibhatla A, Indana D, Chaudhuri O. Cell-extracellular matrix mechanotransduction in 3D. Nature Reviews. Molecular Cell Biology. PMID 36849594 DOI: 10.1038/s41580-023-00583-1  0.321
2022 Sikic L, Schulman E, Kosklin A, Saraswathibhatla A, Chaudhuri O, Pokki J. Nanoscale Tracking Combined with Cell-Scale Microrheology Reveals Stepwise Increases in Force Generated by Cancer Cell Protrusions. Nano Letters. PMID 35950832 DOI: 10.1021/acs.nanolett.2c01327  0.34
2022 Gupta VK, Chaudhuri O. Mechanical regulation of cell-cycle progression and division. Trends in Cell Biology. PMID 35491306 DOI: 10.1016/j.tcb.2022.03.010  0.343
2022 Liu AP, Appel EA, Ashby PD, Baker BM, Franco E, Gu L, Haynes K, Joshi NS, Kloxin AM, Kouwer PHJ, Mittal J, Morsut L, Noireaux V, Parekh S, Schulman R, ... ... Chaudhuri O, et al. The living interface between synthetic biology and biomaterial design. Nature Materials. 21: 390-397. PMID 35361951 DOI: 10.1038/s41563-022-01231-3  0.637
2021 Slater B, Li J, Indana D, Xie Y, Chaudhuri O, Kim T. Transient mechanical interactions between cells and viscoelastic extracellular matrix. Soft Matter. PMID 34137758 DOI: 10.1039/d0sm01911a  0.346
2021 Slater B, Li J, Indana D, Xie Y, Chaudhuri O, Kim T. Transient mechanical interactions between cells and viscoelastic extracellular matrix. Soft Matter. PMID 34137758 DOI: 10.1039/d0sm01911a  0.346
2021 Gupta VK, Nam S, Yim D, Camuglia J, Martin JL, Sanders EN, O'Brien LE, Martin AC, Kim T, Chaudhuri O. The nature of cell division forces in epithelial monolayers. The Journal of Cell Biology. 220. PMID 34132746 DOI: 10.1083/jcb.202011106  0.38
2021 Gupta VK, Nam S, Yim D, Camuglia J, Martin JL, Sanders EN, O'Brien LE, Martin AC, Kim T, Chaudhuri O. The nature of cell division forces in epithelial monolayers. The Journal of Cell Biology. 220. PMID 34132746 DOI: 10.1083/jcb.202011106  0.38
2021 Charbonier F, Indana D, Chaudhuri O. Tuning Viscoelasticity in Alginate Hydrogels for 3D Cell Culture Studies. Current Protocols. 1: e124. PMID 34000104 DOI: 10.1002/cpz1.124  0.323
2021 Gong Z, Wisdom KM, McEvoy E, Chang J, Adebowale K, Price CC, Chaudhuri O, Shenoy VB. Recursive feedback between matrix dissipation and chemo-mechanical signaling drives oscillatory growth of cancer cell invadopodia. Cell Reports. 35: 109047. PMID 33909999 DOI: 10.1016/j.celrep.2021.109047  0.332
2021 Pokki J, Zisi I, Schulman E, Indana D, Chaudhuri O. Magnetic probe-based microrheology reveals local softening and stiffening of 3D collagen matrices by fibroblasts. Biomedical Microdevices. 23: 27. PMID 33900463 DOI: 10.1007/s10544-021-00547-2  0.324
2021 Nam S, Lin YH, Kim T, Chaudhuri O. Cellular Pushing Forces during Mitosis Drive Mitotic Elongation in Collagen Gels. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 8: 2000403. PMID 33643782 DOI: 10.1002/advs.202000403  0.405
2020 Chaudhuri O, Cooper-White J, Janmey PA, Mooney DJ, Shenoy VB. Effects of extracellular matrix viscoelasticity on cellular behaviour. Nature. 584: 535-546. PMID 32848221 DOI: 10.1038/S41586-020-2612-2  0.475
2020 Chang J, Pang EM, Adebowale K, Wisdom KM, Chaudhuri O. Increased Stiffness Inhibits Invadopodia Formation and Cell Migration in 3D. Biophysical Journal. PMID 32697977 DOI: 10.1016/J.Bpj.2020.07.003  0.458
2020 Jung W, Li J, Chaudhuri O, Kim T. Nonlinear Elastic and Inelastic Properties of Cells. Journal of Biomechanical Engineering. PMID 32253428 DOI: 10.1115/1.4046863  0.444
2019 Lee JY, Dominguez AA, Nam S, Stowers RS, Qi LS, Chaudhuri O. Identification of cell context-dependent YAP-associated proteins reveals β and β integrin mediate YAP translocation independently of cell spreading. Scientific Reports. 9: 17188. PMID 31748579 DOI: 10.1038/S41598-019-53659-4  0.317
2019 Nam S, Gupta VK, Lee HP, Lee JY, Wisdom KM, Varma S, Flaum EM, Davis C, West RB, Chaudhuri O. Cell cycle progression in confining microenvironments is regulated by a growth-responsive TRPV4-PI3K/Akt-p27 signaling axis. Science Advances. 5: eaaw6171. PMID 31457089 DOI: 10.1126/Sciadv.Aaw6171  0.355
2019 Chang J, Chaudhuri O. Beyond proteases: Basement membrane mechanics and cancer invasion. The Journal of Cell Biology. PMID 31315943 DOI: 10.1083/Jcb.201903066  0.391
2019 Stowers RS, Shcherbina A, Israeli J, Gruber JJ, Chang J, Nam S, Rabiee A, Teruel MN, Snyder MP, Kundaje A, Chaudhuri O. Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility. Nature Biomedical Engineering. PMID 31285581 DOI: 10.1038/S41551-019-0420-5  0.352
2019 Chen Y, Nam S, Chaudhuri O, Huang HC. The evolution of spindles and their mechanical implications for cancer metastasis. Cell Cycle (Georgetown, Tex.). 1-5. PMID 31234701 DOI: 10.1080/15384101.2019.1632137  0.385
2019 Wisdom KM, Indana D, Chou PE, Desai R, Kim T, Chaudhuri O. Covalent cross-linking of basement membrane-like matrices physically restricts invasive protrusions in breast cancer cells. Matrix Biology : Journal of the International Society For Matrix Biology. PMID 31163245 DOI: 10.1016/J.Matbio.2019.05.006  0.417
2019 Nam S, Stowers R, Lou J, Xia Y, Chaudhuri O. Varying PEG density to control stress relaxation in alginate-PEG hydrogels for 3D cell culture studies. Biomaterials. 200: 15-24. PMID 30743050 DOI: 10.1016/J.Biomaterials.2019.02.004  0.363
2019 Lee HP, Stowers R, Chaudhuri O. Volume expansion and TRPV4 activation regulate stem cell fate in three-dimensional microenvironments. Nature Communications. 10: 529. PMID 30705265 DOI: 10.1038/S41467-019-08465-X  0.38
2018 Wisdom KM, Adebowale K, Chang J, Lee JY, Nam S, Desai R, Rossen NS, Rafat M, West RB, Hodgson L, Chaudhuri O. Matrix mechanical plasticity regulates cancer cell migration through confining microenvironments. Nature Communications. 9: 4144. PMID 30297715 DOI: 10.1038/S41467-018-06641-Z  0.45
2018 Lou J, Liu F, Lindsay CD, Chaudhuri O, Heilshorn SC, Xia Y. Dynamic Hyaluronan Hydrogels with Temporally Modulated High Injectability and Stability Using a Biocompatible Catalyst. Advanced Materials (Deerfield Beach, Fla.). e1705215. PMID 29682801 DOI: 10.1002/Adma.201705215  0.345
2018 Gong Z, Szczesny SE, Caliari SR, Charrier EE, Chaudhuri O, Cao X, Lin Y, Mauck RL, Janmey PA, Burdick JA, Shenoy VB. Matching material and cellular timescales maximizes cell spreading on viscoelastic substrates. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507238 DOI: 10.1073/Pnas.1716620115  0.429
2018 Ban E, Franklin JM, Nam S, Smith LR, Wang H, Wells RG, Chaudhuri O, Liphardt JT, Shenoy VB. Mechanisms of Plastic Deformation in Collagen Networks Induced by Cellular Forces. Biophysical Journal. 114: 450-461. PMID 29401442 DOI: 10.1016/J.Bpj.2017.11.3739  0.428
2018 Lee JY, Chang J, Nam S, Lee H, Dominguez AA, Varma S, Qi LS, West RB, Chaudhuri O. Abstract 185: p300 and STAT3 drive YAP-independent mechanotransduction during breast cancer invasion Cancer Research. 78: 185-185. DOI: 10.1158/1538-7445.Am2018-185  0.302
2018 Nam S, Chaudhuri O. Mitotic cells generate protrusive extracellular forces to divide in three-dimensional microenvironments Nature Physics. 14: 621-628. DOI: 10.1038/S41567-018-0092-1  0.49
2017 Lou J, Stowers R, Nam S, Xia Y, Chaudhuri O. Stress relaxing hyaluronic acid-collagen hydrogels promote cell spreading, fiber remodeling, and focal adhesion formation in 3D cell culture. Biomaterials. 154: 213-222. PMID 29132046 DOI: 10.1016/J.Biomaterials.2017.11.004  0.452
2017 Ayala P, Dai E, Hawes M, Liu L, Chaudhuri O, Haller CA, Mooney DJ, Chaikof EL. Evaluation of a bioengineered construct for tissue engineering applications. Journal of Biomedical Materials Research. Part B, Applied Biomaterials. PMID 29130596 DOI: 10.1002/Jbm.B.34042  0.308
2017 Madl CM, LeSavage BL, Dewi RE, Dinh CB, Stowers RS, Khariton M, Lampe KJ, Nguyen D, Chaudhuri O, Enejder A, Heilshorn SC. Maintenance of neural progenitor cell stemness in 3D hydrogels requires matrix remodelling. Nature Materials. PMID 29115291 DOI: 10.1038/Nmat5020  0.363
2017 Lee HP, Gu L, Mooney DJ, Levenston ME, Chaudhuri O. Mechanical confinement regulates cartilage matrix formation by chondrocytes. Nature Materials. PMID 28967913 DOI: 10.1038/Nmat4993  0.412
2017 Wisdom K, Chaudhuri O. 3D Cell Culture in Interpenetrating Networks of Alginate and rBM Matrix. Methods in Molecular Biology (Clifton, N.J.). 1612: 29-37. PMID 28634933 DOI: 10.1007/978-1-4939-7021-6_3  0.454
2017 Chaudhuri O. Viscoelastic hydrogels for 3D cell culture. Biomaterials Science. PMID 28584885 DOI: 10.1039/C7Bm00261K  0.442
2017 Liu AP, Chaudhuri O, Parekh SH. New advances in probing cell-extracellular matrix interactions. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 28352896 DOI: 10.1039/C6Ib00251J  0.709
2017 Lee JY, Chang J, Nam S, Chaudhuri O. Abstract 2956A: Cancer invasion of mammary epithelial cells in 3D culture shows YAP-independent mechanotransduction Cancer Research. 77. DOI: 10.1158/1538-7445.Am2017-2956A  0.342
2017 Lee JY, Chaudhuri O. Regulation of Breast Cancer Progression by Extracellular Matrix Mechanics: Insights from 3D Culture Models Acs Biomaterials Science & Engineering. 4: 302-313. DOI: 10.1021/Acsbiomaterials.7B00071  0.357
2016 Nam S, Lee J, Brownfield DG, Chaudhuri O. Viscoplasticity Enables Mechanical Remodeling of Matrix by Cells. Biophysical Journal. 111: 2296-2308. PMID 27851951 DOI: 10.1016/J.Bpj.2016.10.002  0.751
2016 Nam S, Hu KH, Butte MJ, Chaudhuri O. Strain-enhanced stress relaxation impacts nonlinear elasticity in collagen gels. Proceedings of the National Academy of Sciences of the United States of America. PMID 27140623 DOI: 10.1073/Pnas.1523906113  0.436
2015 Miserez A, Weaver JC, Chaudhuri O. Biological materials and molecular biomimetics - filling up the empty soft materials space for tissue engineering applications. Journal of Materials Chemistry. B. 3: 13-24. PMID 32261919 DOI: 10.1039/C4Tb01267D  0.335
2015 Chaudhuri O, Gu L, Klumpers D, Darnell M, Bencherif SA, Weaver JC, Huebsch N, Lee HP, Lippens E, Duda GN, Mooney DJ. Hydrogels with tunable stress relaxation regulate stem cell fate and activity. Nature Materials. PMID 26618884 DOI: 10.1038/Nmat4489  0.41
2015 Huebsch N, Lippens E, Lee K, Mehta M, Koshy ST, Darnell MC, Desai RM, Madl CM, Xu M, Zhao X, Chaudhuri O, Verbeke C, Kim WS, Alim K, Mammoto A, et al. Matrix elasticity of void-forming hydrogels controls transplanted-stem-cell-mediated bone formation. Nature Materials. PMID 26366848 DOI: 10.1038/Nmat4407  0.353
2015 Ayala P, Caves J, Dai E, Siraj L, Liu L, Chaudhuri O, Haller CA, Mooney DJ, Chaikof EL. Engineered composite fascia for stem cell therapy in tissue repair applications. Acta Biomaterialia. 26: 1-12. PMID 26283165 DOI: 10.1016/J.Actbio.2015.08.012  0.355
2015 Chaudhuri O, Gu L, Darnell M, Klumpers D, Bencherif SA, Weaver JC, Huebsch N, Mooney DJ. Substrate stress relaxation regulates cell spreading. Nature Communications. 6: 6364. PMID 25695512 DOI: 10.1038/Ncomms7365  0.45
2014 Branco da Cunha C, Klumpers DD, Li WA, Koshy ST, Weaver JC, Chaudhuri O, Granja PL, Mooney DJ. Influence of the stiffness of three-dimensional alginate/collagen-I interpenetrating networks on fibroblast biology. Biomaterials. 35: 8927-36. PMID 25047628 DOI: 10.1016/J.Biomaterials.2014.06.047  0.417
2014 Chaudhuri O, Koshy ST, Branco da Cunha C, Shin JW, Verbeke CS, Allison KH, Mooney DJ. Extracellular matrix stiffness and composition jointly regulate the induction of malignant phenotypes in mammary epithelium. Nature Materials. 13: 970-8. PMID 24930031 DOI: 10.1038/Nmat4009  0.373
2012 Sun JY, Zhao X, Illeperuma WR, Chaudhuri O, Oh KH, Mooney DJ, Vlassak JJ, Suo Z. Highly stretchable and tough hydrogels. Nature. 489: 133-6. PMID 22955625 DOI: 10.1038/Nature11409  0.368
2012 Chaudhuri O, Mooney DJ. Stem-cell differentiation: Anchoring cell-fate cues. Nature Materials. 11: 568-9. PMID 22717486 DOI: 10.1038/Nmat3366  0.352
2012 Risca VI, Wang EB, Chaudhuri O, Chia JJ, Geissler PL, Fletcher DA. Actin filament curvature biases branching direction. Proceedings of the National Academy of Sciences of the United States of America. 109: 2913-8. PMID 22308368 DOI: 10.1073/Pnas.1114292109  0.63
2011 Lam WA, Chaudhuri O, Crow A, Webster KD, Li TD, Kita A, Huang J, Fletcher DA. Mechanics and contraction dynamics of single platelets and implications for clot stiffening. Nature Materials. 10: 61-6. PMID 21131961 DOI: 10.1038/Nmat2903  0.635
2010 Chaudhuri O, Fletcher DA. Protrusive forces generated by dendritic actin networks during cell crawling Actin-Based Motility: Cellular, Molecular and Physical Aspects. 359-379. DOI: 10.1007/978-90-481-9301-1_15  0.596
2009 Chaudhuri O, Parekh SH, Lam WA, Fletcher DA. Combined atomic force microscopy and side-view optical imaging for mechanical studies of cells. Nature Methods. 6: 383-7. PMID 19363493 DOI: 10.1038/Nmeth.1320  0.76
2009 Risca V, Chaudhuri O, Chia J, Fletcher DA. Actin Branching Is Affected by Local Bending of the Mother Filament Biophysical Journal. 96: 122a. DOI: 10.1016/J.Bpj.2008.12.543  0.592
2007 Choy JL, Parekh SH, Chaudhuri O, Liu AP, Bustamante C, Footer MJ, Theriot JA, Fletcher DA. Differential force microscope for long time-scale biophysical measurements. The Review of Scientific Instruments. 78: 043711. PMID 17477674 DOI: 10.1063/1.2727478  0.753
2007 Chaudhuri O, Parekh SH, Fletcher DA. Reversible stress softening of actin networks. Nature. 445: 295-8. PMID 17230186 DOI: 10.1038/Nature05459  0.734
2005 Parekh SH, Chaudhuri O, Theriot JA, Fletcher DA. Loading history determines the velocity of actin-network growth. Nature Cell Biology. 7: 1219-23. PMID 16299496 DOI: 10.1038/Ncb1336  0.723
2004 Chaudhuri O, Parekh SH, Liu A, Fletcher DA. Viscoelasticity of growing actin networks Advances in Bioengineering, Bed. 355-356.  0.708
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