| Year |
Citation |
Score |
| 2023 |
Nogin Y, Bar-Lev D, Hanania D, Detinis Zur T, Ebenstein Y, Yaakobi E, Weinberger N, Shechtman Y. Design of optimal labeling patterns for optical genome mapping via information theory. Bioinformatics (Oxford, England). 39. PMID 37758248 DOI: 10.1093/bioinformatics/btad601 |
0.358 |
|
| 2023 |
Nifker G, Grunwald A, Margalit S, Tulpova Z, Michaeli Y, Har-Gil H, Maimon N, Roichman E, Schütz L, Weinhold E, Ebenstein Y. Dam Assisted Fluorescent Tagging of Chromatin Accessibility (DAFCA) for Optical Genome Mapping in Nanochannel Arrays. Acs Nano. 17: 9178-9187. PMID 37154345 DOI: 10.1021/acsnano.2c12755 |
0.432 |
|
| 2023 |
Nogin Y, Detinis Zur T, Margalit S, Barzilai I, Alalouf O, Ebenstein Y, Shechtman Y. DeepOM: single-molecule optical genome mapping via deep learning. Bioinformatics (Oxford, England). 39. PMID 36929928 DOI: 10.1093/bioinformatics/btad137 |
0.396 |
|
| 2022 |
Gabrieli T, Michaeli Y, Avraham S, Torchinsky D, Margalit S, Schütz L, Juhasz M, Coruh C, Arbib N, Zhou ZS, Law JA, Weinhold E, Ebenstein Y. Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping. Nucleic Acids Research. PMID 35657088 DOI: 10.1093/nar/gkac460 |
0.37 |
|
| 2021 |
Gilat N, Fridman D, Sharim H, Margalit S, Gassman NR, Michaeli Y, Ebenstein Y. From single-molecule to genome-wide mapping of DNA lesions: repair-assisted damage detection sequencing. Biophysical Reports. 1: None. PMID 34939047 DOI: 10.1016/j.bpr.2021.100017 |
0.698 |
|
| 2021 |
Jeffet J, Margalit S, Michaeli Y, Ebenstein Y. Single-molecule optical genome mapping in nanochannels: multidisciplinarity at the nanoscale. Essays in Biochemistry. PMID 33739394 DOI: 10.1042/EBC20200021 |
0.41 |
|
| 2020 |
Heck C, Torchinsky D, Nifker G, Gularek F, Michaeli Y, Weinhold E, Ebenstein Y. Label as you fold: methyltransferase-assisted functionalization of DNA nanostructures. Nanoscale. PMID 33001091 DOI: 10.1039/d0nr03694c |
0.316 |
|
| 2020 |
Singh V, Johansson P, Torchinsky D, Lin YL, Öz R, Ebenstein Y, Hammarsten O, Westerlund F. Quantifying DNA damage induced by ionizing radiation and hyperthermia using single DNA molecule imaging. Translational Oncology. 13: 100822. PMID 32652469 DOI: 10.1016/J.Tranon.2020.100822 |
0.421 |
|
| 2020 |
Gilat N, Torchinsky D, Margalit S, Michaeli Y, Avraham S, Sharim H, Elkoshi N, Levy C, Zirkin S, Ebenstein Y. Rapid Quantification of Oxidation and UV Induced DNA Damage by Repair Assisted Damage Detection-(Rapid RADD). Analytical Chemistry. PMID 32578422 DOI: 10.1021/Acs.Analchem.0C01393 |
0.391 |
|
| 2019 |
Torchinsky D, Michaeli Y, Gassman NR, Ebenstein Y. Simultaneous detection of multiple DNA damage types by multi-colour fluorescent labelling. Chemical Communications (Cambridge, England). 55: 11414-11417. PMID 31482872 DOI: 10.1039/C9Cc05198H |
0.686 |
|
| 2019 |
Jain N, Shahal T, Gabrieli T, Gilat N, Torchinsky D, Michaeli Y, Vogel V, Ebenstein Y. Global Modulation in DNA Epigenetics during Pro-Inflammatory Macrophage Activation. Epigenetics. PMID 31262215 DOI: 10.1080/15592294.2019.1638700 |
0.393 |
|
| 2019 |
Margalit S, Avraham S, Shahal T, Michaeli Y, Gilat N, Magod P, Caspi M, Loewenstein S, Lahat G, Friedmann-Morvinski D, Kariv R, Rosin-Arbesfeld R, Zirkin S, Ebenstein Y. 5-Hydroxymethylcytosine as a clinical biomarker: Fluorescence-based assay for high-throughput epigenetic quantification in human tissues. International Journal of Cancer. PMID 31211411 DOI: 10.1002/Ijc.32519 |
0.311 |
|
| 2019 |
Müller V, Dvirnas A, Andersson J, Singh V, Kk S, Johansson P, Ebenstein Y, Ambjörnsson T, Westerlund F. Enzyme-free optical DNA mapping of the human genome using competitive binding. Nucleic Acids Research. PMID 31165870 DOI: 10.1093/Nar/Gkz489 |
0.533 |
|
| 2019 |
Sharim H, Grunwald A, Gabrieli T, Michaeli Y, Margalit S, Torchinsky D, Arielly R, Nifker G, Juhasz M, Gularek F, Almalvez M, Dufault B, Chandra SS, Liu A, Bhattacharya S, ... ... Ebenstein Y, et al. Long-read single-molecule maps of the functional methylome. Genome Research. PMID 30846530 DOI: 10.1101/Gr.240739.118 |
0.797 |
|
| 2019 |
Wu S, Jeffet J, Grunwald A, Sharim H, Gilat N, Torchinsky D, Zheng Q, Zirkin S, Xu L, Ebenstein Y. Microfluidic DNA combing for parallel single-molecule analysis. Nanotechnology. 30: 045101. PMID 30485249 DOI: 10.1088/1361-6528/Aaeddc |
0.479 |
|
| 2019 |
Lapshina N, Jeffet J, Rosenman G, Ebenstein Y, Ellenbogen T. Single Fluorescent Peptide Nanodots Acs Photonics. 6: 1626-1631. DOI: 10.1021/Acsphotonics.9B00685 |
0.337 |
|
| 2018 |
Heck C, Michaeli Y, Bald I, Ebenstein Y. Analytical epigenetics: single-molecule optical detection of DNA and histone modifications. Current Opinion in Biotechnology. 55: 151-158. PMID 30326408 DOI: 10.1016/J.Copbio.2018.09.006 |
0.455 |
|
| 2018 |
Shahal T, Koren O, Shefer G, Stern N, Ebenstein Y. Hypersensitive quantification of global 5-hydroxymethylcytosine by chemoenzymatic tagging. Analytica Chimica Acta. 1038: 87-96. PMID 30278911 DOI: 10.1016/J.Aca.2018.08.035 |
0.303 |
|
| 2018 |
Gabrieli T, Sharim H, Nifker G, Jeffet J, Shahal T, Arielly R, Levi-Sakin M, Hoch L, Arbib N, Michaeli Y, Ebenstein Y. Epigenetic Optical Mapping of 5-Hydroxymethylcytosine in Nanochannel Arrays. Acs Nano. PMID 29924591 DOI: 10.1021/Acsnano.8B03023 |
0.799 |
|
| 2018 |
Gabrieli T, Sharim H, Fridman D, Arbib N, Michaeli Y, Ebenstein Y. Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH). Nucleic Acids Research. PMID 29788371 DOI: 10.1093/Nar/Gky411 |
0.322 |
|
| 2018 |
Holton NW, Ebenstein Y, Gassman NR. Broad spectrum detection of DNA damage by Repair Assisted Damage Detection (RADD). Dna Repair. 66: 42-49. PMID 29723708 DOI: 10.1016/J.Dnarep.2018.04.007 |
0.687 |
|
| 2017 |
Arielly R, Ebenstein Y. Irys Extract. Bioinformatics (Oxford, England). PMID 29036307 DOI: 10.1093/bioinformatics/btx437 |
0.763 |
|
| 2017 |
Gilat N, Tabachnik T, Shwartz A, Shahal T, Torchinsky D, Michaeli Y, Nifker G, Zirkin S, Ebenstein Y. Single-molecule quantification of 5-hydroxymethylcytosine for diagnosis of blood and colon cancers. Clinical Epigenetics. 9: 70. PMID 28725280 DOI: 10.1186/S13148-017-0368-9 |
0.433 |
|
| 2016 |
Shahal T, Green O, Hananel U, Michaeli Y, Shabat D, Ebenstein Y. Simple and cost-effective fluorescent labeling of 5-hydroxymethylcytosine. Methods and Applications in Fluorescence. 4: 044003. PMID 28192296 DOI: 10.1088/2050-6120/4/4/044003 |
0.377 |
|
| 2016 |
Jeffet J, Kobo A, Su T, Grunwald A, Green O, Nilsson AN, Eisenberg E, Ambjornsson T, Westerlund F, Weinhold E, Shabat D, Purohit PK, Ebenstein Y. Super-Resolution Genome Mapping in Silicon Nanochannels. Acs Nano. PMID 27646634 DOI: 10.1021/Acsnano.6B05398 |
0.528 |
|
| 2016 |
Gilboa T, Torfstein C, Juhasz M, Grunwald A, Ebenstein Y, Weinhold E, Meller A. Single-Molecule DNA Methylation Quantification Using Electro-optical Sensing in Solid-State Nanopores. Acs Nano. PMID 27580095 DOI: 10.1021/Acsnano.6B04748 |
0.491 |
|
| 2015 |
Torchinsky D, Ebenstein Y. Sizing femtogram amounts of dsDNA by single-molecule counting. Nucleic Acids Research. PMID 26365235 DOI: 10.1093/Nar/Gkv904 |
0.439 |
|
| 2015 |
Jiang W, Zhao X, Gabrieli T, Lou C, Ebenstein Y, Zhu TF. Cas9-Assisted Targeting of CHromosome segments CATCH enables one-step targeted cloning of large gene clusters. Nature Communications. 6: 8101. PMID 26323354 DOI: 10.1038/Ncomms9101 |
0.349 |
|
| 2015 |
Nifker G, Levy-Sakin M, Berkov-Zrihen Y, Shahal T, Gabrieli T, Fridman M, Ebenstein Y. One-Pot Chemoenzymatic Cascade for Labeling of the Epigenetic Marker 5-Hydroxymethylcytosine. Chembiochem : a European Journal of Chemical Biology. PMID 26147952 DOI: 10.1002/Cbic.201500329 |
0.363 |
|
| 2015 |
Grunwald A, Dahan M, Giesbertz A, Nilsson A, Nyberg LK, Weinhold E, Ambjörnsson T, Westerlund F, Ebenstein Y. Bacteriophage strain typing by rapid single molecule analysis. Nucleic Acids Research. PMID 26019180 DOI: 10.1093/Nar/Gkv563 |
0.509 |
|
| 2015 |
Berger O, Adler-Abramovich L, Levy-Sakin M, Grunwald A, Liebes-Peer Y, Bachar M, Buzhansky L, Mossou E, Forsyth VT, Schwartz T, Ebenstein Y, Frolow F, Shimon LJ, Patolsky F, Gazit E. Light-emitting self-assembled peptide nucleic acids exhibit both stacking interactions and Watson-Crick base pairing. Nature Nanotechnology. 10: 353-60. PMID 25775151 DOI: 10.1038/Nnano.2015.27 |
0.327 |
|
| 2014 |
Shahal T, Gilat N, Michaeli Y, Redy-Keisar O, Shabat D, Ebenstein Y. Spectroscopic quantification of 5-hydroxymethylcytosine in genomic DNA. Analytical Chemistry. 86: 8231-7. PMID 25072105 DOI: 10.1021/Ac501609D |
0.476 |
|
| 2014 |
Zirkin S, Fishman S, Sharim H, Michaeli Y, Don J, Ebenstein Y. Lighting up individual DNA damage sites by in vitro repair synthesis. Journal of the American Chemical Society. 136: 7771-6. PMID 24802414 DOI: 10.1021/Ja503677N |
0.43 |
|
| 2014 |
Levy-Sakin M, Grunwald A, Kim S, Gassman NR, Gottfried A, Antelman J, Kim Y, Ho SO, Samuel R, Michalet X, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, ... ... Ebenstein Y, et al. Toward single-molecule optical mapping of the epigenome. Acs Nano. 8: 14-26. PMID 24328256 DOI: 10.1021/Nn4050694 |
0.781 |
|
| 2013 |
Shaul P, Frenkel M, Goldstein EB, Mittelman L, Grunwald A, Ebenstein Y, Tsarfaty I, Fridman M. The structure of anthracycline derivatives determines their subcellular localization and cytotoxic activity. Acs Medicinal Chemistry Letters. 4: 323-8. PMID 24900668 DOI: 10.1021/Ml3002852 |
0.32 |
|
| 2013 |
Yevnin M, Kasimov D, Gluckman Y, Ebenstein Y, Roichman Y. Independent and simultaneous three-dimensional optical trapping and imaging. Biomedical Optics Express. 4: 2087-94. PMID 24156066 DOI: 10.1364/Boe.4.002087 |
0.335 |
|
| 2013 |
Michaeli Y, Shahal T, Torchinsky D, Grunwald A, Hoch R, Ebenstein Y. Optical detection of epigenetic marks: sensitive quantification and direct imaging of individual hydroxymethylcytosine bases. Chemical Communications (Cambridge, England). 49: 8599-601. PMID 23756466 DOI: 10.1039/C3Cc42543F |
0.504 |
|
| 2013 |
Levy-Sakin M, Ebenstein Y. Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy. Current Opinion in Biotechnology. 24: 690-8. PMID 23428595 DOI: 10.1016/J.Copbio.2013.01.009 |
0.528 |
|
| 2012 |
Xu L, Feng Z, Sinha D, Ducos B, Ebenstein Y, Tadmor AD, Gauron C, Le Saux T, Lin S, Weiss S, Vriz S, Jullien L, Bensimon D. Spatiotemporal manipulation of retinoic acid activity in zebrafish hindbrain development via photo-isomerization. Development (Cambridge, England). 139: 3355-62. PMID 22874920 DOI: 10.1242/Dev.077776 |
0.414 |
|
| 2012 |
Michaeli Y, Ebenstein Y. Channeling DNA for optical mapping. Nature Biotechnology. 30: 762-3. PMID 22871713 DOI: 10.1038/Nbt.2324 |
0.439 |
|
| 2012 |
Kim S, Gottfried A, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, Weinhold E, Weiss S, Ebenstein Y. Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins. Angewandte Chemie (International Ed. in English). 51: 3578-81. PMID 22344826 DOI: 10.1002/Anie.201107714 |
0.81 |
|
| 2012 |
Kim S, Gottfried A, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, Weinhold E, Weiss S, Ebenstein Y. Back Cover: Enzymatically Incorporated Genomic Tags for Optical Mapping of DNA-Binding Proteins (Angew. Chem. Int. Ed. 15/2012) Angewandte Chemie International Edition. 51: 3724-3724. DOI: 10.1002/Anie.201200628 |
0.804 |
|
| 2012 |
Kim S, Gottfried A, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, Weinhold E, Weiss S, Ebenstein Y. Rücktitelbild: Enzymatically Incorporated Genomic Tags for Optical Mapping of DNA-Binding Proteins (Angew. Chem. 15/2012) Angewandte Chemie. 124: 3786-3786. DOI: 10.1002/Ange.201200628 |
0.804 |
|
| 2011 |
Iyer G, Pinaud F, Xu J, Ebenstein Y, Li J, Chang J, Dahan M, Weiss S. Aromatic aldehyde and hydrazine activated peptide coated quantum dots for easy bioconjugation and live cell imaging. Bioconjugate Chemistry. 22: 1006-11. PMID 21553893 DOI: 10.1021/Bc100593M |
0.711 |
|
| 2010 |
Ebenstein Y, Bentolila LA. Single-molecule detection: focusing on the objective. Nature Nanotechnology. 5: 99-100. PMID 20130586 DOI: 10.1038/Nnano.2010.10 |
0.32 |
|
| 2010 |
Ebenstein Y, Gassman N, Weiss S. Mapping transcription factors on extended dna: A single molecule approach Springer Series in Chemical Physics. 96: 203-216. DOI: 10.1007/978-3-642-02597-6_11 |
0.714 |
|
| 2009 |
Antelman J, Ebenstein Y, Dertinger T, Michalet X, Weiss S. Suppression of quantum dot blinking in DTT-doped polymer films. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 113: 11541-11545. PMID 20161096 DOI: 10.1021/Jp811078E |
0.514 |
|
| 2009 |
Ebenstein Y, Gassman N, Kim S, Weiss S. Combining atomic force and fluorescence microscopy for analysis of quantum-dot labeled protein-DNA complexes. Journal of Molecular Recognition : Jmr. 22: 397-402. PMID 19452448 DOI: 10.1002/Jmr.956 |
0.804 |
|
| 2009 |
Ebenstein Y, Gassman N, Kim S, Antelman J, Kim Y, Ho S, Samuel R, Michalet X, Weiss S. Lighting up individual DNA binding proteins with quantum dots. Nano Letters. 9: 1598-603. PMID 19290670 DOI: 10.1021/Nl803820B |
0.781 |
|
| 2009 |
Bentolila LA, Ebenstein Y, Weiss S. Quantum dots for in vivo small-animal imaging. Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine. 50: 493-6. PMID 19289434 DOI: 10.2967/Jnumed.108.053561 |
0.533 |
|
| 2009 |
Schipper ML, Iyer G, Koh AL, Cheng Z, Ebenstein Y, Aharoni A, Keren S, Bentolila LA, Li J, Rao J, Chen X, Banin U, Wu AM, Sinclair R, Weiss S, et al. Particle size, surface coating, and PEGylation influence the biodistribution of quantum dots in living mice. Small (Weinheim An Der Bergstrasse, Germany). 5: 126-34. PMID 19051182 DOI: 10.1002/Smll.200800003 |
0.616 |
|
| 2006 |
Ebenstein Y, Yoskovitz E, Costi R, Aharoni A, Banin U. Interaction of scanning probes with semiconductor nanocrystals; physical mechanism and basis for near-field optical imaging. The Journal of Physical Chemistry. A. 110: 8297-303. PMID 16821813 DOI: 10.1021/Jp056229O |
0.677 |
|
| 2005 |
Mokari T, Sertchook H, Aharoni A, Ebenstein Y, Avnir D, Banin U. Nano@micro: General method for entrapment of nanocrystals in sol-gel-derived composite hydrophobic silica spheres Chemistry of Materials. 17: 258-263. DOI: 10.1021/Cm048477N |
0.687 |
|
| 2004 |
Rothenberg E, Ebenstein Y, Kazes M, Banin U. Direct observation of highly polarized non-linear absorption dipole of single semiconductor quantum rods Materials Research Society Symposium Proceedings. 818: 171-176. DOI: 10.1557/Proc-818-M6.5.1 |
0.524 |
|
| 2004 |
Nahum E, Ebenstein Y, Aharoni A, Mokari T, Banin U, Shimoni N, Millo O. Transport and Charging in Single Semiconductor Nanocrystals Studied by Conductance Atomic Force Microscopy Nano Letters. 4: 103-108. DOI: 10.1021/Nl034928B |
0.681 |
|
| 2004 |
Rothenberg E, Ebenstein Y, Kazes M, Banin U. Two-photon fluorescence microscopy of single semiconductor quantum rods: Direct observation of highly polarized nonlinear absorption dipole Journal of Physical Chemistry B. 108: 2797-2800. DOI: 10.1021/Jp037978D |
0.539 |
|
| 2004 |
Ebenstein Y, Mokari T, Banin U. Quantum-dot-functionalized scanning probes for fluorescence-energy-transfer-based microscopy Journal of Physical Chemistry B. 108: 93-99. DOI: 10.1021/Jp036135J |
0.723 |
|
| 2003 |
Kazes M, Lewis DY, Ebenstein Y, Mokari T, Banin U. Lasing from CdSe/ZnS quantum rods in a cylindrical microcavity Materials Research Society Symposium - Proceedings. 789: 11-16. DOI: 10.1557/Proc-789-N2.5 |
0.685 |
|
| 2002 |
Ebenstein Y, Mokari T, Banin U. Fluorescence quantum yield of CdSe/ZnS nanocrystals investigated by correlated atomic-force and single-particle fluorescence microscopy Applied Physics Letters. 80: 4033-4035. DOI: 10.1063/1.1482785 |
0.708 |
|
| 2002 |
Ebenstein Y, Nahum E, Banin U. Tapping Mode Atomic Force Microscopy for Nanoparticle Sizing: Tip-Sample Interaction Effects Nano Letters. 2: 945-950. DOI: 10.1021/Nl025673P |
0.508 |
|
| 2002 |
Kazes M, Lewis DY, Ebenstein Y, Mokari T, Banin U. Lasing from semiconductor quantum rods in a cylindrical microcavity Advanced Materials. 14: 317-321. DOI: 10.1002/1521-4095(20020219)14:4<317::Aid-Adma317>3.0.Co;2-U |
0.656 |
|
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