| Year |
Citation |
Score |
| 2019 |
Liang K, Islam MT, Hussain N, Winkjer NS, Im MS, Rowe LA, Tarr CL, Boucher Y. Draft Genome Sequences of Eight sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae. Microbiology Resource Announcements. 8. PMID 30687832 DOI: 10.1128/MRA.01473-18 |
0.446 |
|
| 2018 |
Islam MT, Liang K, Im MS, Winkjer J, Busby S, Tarr CL, Boucher Y. Draft Genome Sequences of Nine sp. Isolates from across the United States Closely Related to Vibrio cholerae. Microbiology Resource Announcements. 7. PMID 30533846 DOI: 10.1128/MRA.00965-18 |
0.462 |
|
| 2017 |
Islam MT, Alam M, Boucher Y. Emergence, ecology and dispersal of the pandemic generating Vibrio cholerae lineage. International Microbiology : the Official Journal of the Spanish Society For Microbiology. 20: 106-115. PMID 29446801 DOI: 10.2436/20.1501.01.291 |
0.543 |
|
| 2017 |
Liang K, Orata FD, Winkjer NS, Rowe LA, Tarr CL, Boucher Y. Complete Genome Sequence of Vibrio sp. Strain 2521-89, a Close Relative of Vibrio cholerae Isolated from Lake Water in New Mexico, USA. Genome Announcements. 5. PMID 28860256 DOI: 10.1128/Genomea.00905-17 |
0.785 |
|
| 2017 |
Kirchberger PC, Unterweger D, Provenzano D, Pukatzki S, Boucher Y. Sequential displacement of Type VI Secretion System effector genes leads to evolution of diverse immunity gene arrays in Vibrio cholerae. Scientific Reports. 7: 45133. PMID 28327641 DOI: 10.1038/Srep45133 |
0.793 |
|
| 2016 |
Labbate M, Orata FD, Petty NK, Jayatilleke ND, King WL, Kirchberger PC, Allen C, Mann G, Mutreja A, Thomson NR, Boucher Y, Charles IG. A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules. Scientific Reports. 6: 36891. PMID 27845364 DOI: 10.1038/Srep36891 |
0.786 |
|
| 2016 |
Orata FD, Xu Y, Gladney LM, Rishishwar L, Case RJ, Boucher Y, Jordan IK, Tarr CL. Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis. International Journal of Systematic and Evolutionary Microbiology. PMID 27468862 DOI: 10.1099/Ijsem.0.001327 |
0.8 |
|
| 2016 |
Orata FD, Rosana AR, Xu Y, Simkus DN, Bramucci AR, Boucher Y, Case RJ. Draft Genome Sequences of Four Bacterial Strains Isolated from a Polymicrobial Culture of Naked (N-Type) Emiliania huxleyi CCMP1516. Genome Announcements. 4. PMID 27417846 DOI: 10.1128/Genomea.00674-16 |
0.784 |
|
| 2016 |
Rosana AR, Orata FD, Xu Y, Simkus DN, Bramucci AR, Boucher Y, Case RJ. Draft Genome Sequences of Seven Bacterial Strains Isolated from a Polymicrobial Culture of Coccolith-Bearing (C-Type) Emiliania huxleyi M217. Genome Announcements. 4. PMID 27417845 DOI: 10.1128/Genomea.00673-16 |
0.781 |
|
| 2016 |
Kirchberger PC, Orata FD, Barlow EJ, Kauffman KM, Case RJ, Polz MF, Boucher Y. A small number of phylogenetically distinct clonal complexes dominate a coastal Vibrio cholerae population. Applied and Environmental Microbiology. PMID 27371587 DOI: 10.1128/Aem.01177-16 |
0.763 |
|
| 2016 |
Boucher Y. Sustained Local Diversity of Vibrio cholerae O1 Biotypes in a Previously Cholera-Free Country. Mbio. 7. PMID 27143391 DOI: 10.1128/Mbio.00570-16 |
0.412 |
|
| 2016 |
Akther F, Neogi SB, Chowdhury WB, Sadique A, Islam A, Akhter MZ, Johura FT, Ohnishi M, Watanabe H, Boucher Y, Alam M. Major tdh(+)Vibrio parahaemolyticus serotype changes temporally in the Bay of Bengal estuary of Bangladesh. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 27063395 DOI: 10.1016/J.Meegid.2016.04.003 |
0.385 |
|
| 2015 |
Boucher Y, Orata FD, Alam M. The out-of-the-delta hypothesis: dense human populations in low-lying river deltas served as agents for the evolution of a deadly pathogen. Frontiers in Microbiology. 6: 1120. PMID 26539168 DOI: 10.3389/Fmicb.2015.01120 |
0.771 |
|
| 2015 |
Orata FD, Kirchberger PC, Méheust R, Barlow EJ, Tarr CL, Boucher Y. The Dynamics of Genetic Interactions Between Vibrio metoecus and Vibrio cholerae, Two Close Relatives Co-Occurring in the Environment. Genome Biology and Evolution. PMID 26454015 DOI: 10.1093/Gbe/Evv193 |
0.816 |
|
| 2015 |
Labeeuw L, Martone PT, Boucher Y, Case RJ. Ancient origin of the biosynthesis of lignin precursors. Biology Direct. 10: 23. PMID 25994183 DOI: 10.1186/S13062-015-0052-Y |
0.39 |
|
| 2014 |
Kirchberger PC, Turnsek M, Hunt DE, Haley BJ, Colwell RR, Polz MF, Tarr CL, Boucher Y. Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. International Journal of Systematic and Evolutionary Microbiology. 64: 3208-14. PMID 24972615 DOI: 10.1099/Ijs.0.060145-0 |
0.802 |
|
| 2014 |
Orata FD, Keim PS, Boucher Y. The 2010 cholera outbreak in Haiti: how science solved a controversy. Plos Pathogens. 10: e1003967. PMID 24699938 DOI: 10.1371/Journal.Ppat.1003967 |
0.752 |
|
| 2013 |
Katz LS, Petkau A, Beaulaurier J, Tyler S, Antonova ES, Turnsek MA, Guo Y, Wang S, Paxinos EE, Orata F, Gladney LM, Stroika S, Folster JP, Rowe L, Freeman MM, ... ... Boucher Y, et al. Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti. Mbio. 4. PMID 23820394 DOI: 10.1128/Mbio.00398-13 |
0.811 |
|
| 2013 |
Sureshan V, Deshpande CN, Boucher Y, Koenig JE, Stokes HW, Harrop SJ, Curmi PM, Mabbutt BC. Integron gene cassettes: a repository of novel protein folds with distinct interaction sites. Plos One. 8: e52934. PMID 23349695 DOI: 10.1371/Journal.Pone.0052934 |
0.399 |
|
| 2012 |
Labbate M, Boucher Y, Luu I, Chowdhury PR, Stokes HW. Integron associated mobile genes: Just a collection of plug in apps or essential components of cell network hardware? Mobile Genetic Elements. 2: 13-18. PMID 22754748 DOI: 10.4161/Mge.19510 |
0.419 |
|
| 2012 |
Xue H, Xu Y, Boucher Y, Polz MF. High frequency of a novel filamentous phage, VCY φ, within an environmental Vibrio cholerae population. Applied and Environmental Microbiology. 78: 28-33. PMID 22020507 DOI: 10.1128/Aem.06297-11 |
0.712 |
|
| 2011 |
Labbate M, Boucher Y, Chowdhury PR, Stokes HW. Integration of a laterally acquired gene into a cell network important for growth in a strain of Vibrio rotiferianus. Bmc Microbiology. 11: 253. PMID 22093957 DOI: 10.1186/1471-2180-11-253 |
0.495 |
|
| 2011 |
Case RJ, Boucher Y. Molecular musings in microbial ecology and evolution. Biology Direct. 6: 58. PMID 22074255 DOI: 10.1186/1745-6150-6-58 |
0.414 |
|
| 2011 |
Roy Chowdhury P, Boucher Y, Hassan KA, Paulsen IT, Stokes HW, Labbate M. Genome sequence of Vibrio rotiferianus strain DAT722. Journal of Bacteriology. 193: 3381-2. PMID 21551292 DOI: 10.1128/Jb.05089-11 |
0.476 |
|
| 2011 |
Boucher Y, Cordero OX, Takemura A, Hunt DE, Schliep K, Bapteste E, Lopez P, Tarr CL, Polz MF. Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations. Mbio. 2. PMID 21486909 DOI: 10.1128/Mbio.00335-10 |
0.797 |
|
| 2011 |
Deshpande CN, Harrop SJ, Boucher Y, Hassan KA, Di Leo R, Xu X, Cui H, Savchenko A, Chang C, Labbate M, Paulsen IT, Stokes HW, Curmi PM, Mabbutt BC. Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module. Plos One. 6: e16934. PMID 21390267 DOI: 10.1371/Journal.Pone.0016934 |
0.403 |
|
| 2011 |
Koenig JE, Bourne DG, Curtis B, Dlutek M, Stokes HW, Doolittle WF, Boucher Y. Coral-mucus-associated Vibrio integrons in the Great Barrier Reef: genomic hotspots for environmental adaptation. The Isme Journal. 5: 962-72. PMID 21270840 DOI: 10.1038/Ismej.2010.193 |
0.655 |
|
| 2011 |
Preheim SP, Boucher Y, Wildschutte H, David LA, Veneziano D, Alm EJ, Polz MF. Metapopulation structure of Vibrionaceae among coastal marine invertebrates. Environmental Microbiology. 13: 265-75. PMID 20819104 DOI: 10.1111/J.1462-2920.2010.02328.X |
0.761 |
|
| 2010 |
Lapointe FJ, Lopez P, Boucher Y, Koenig J, Bapteste E. Clanistics: a multi-level perspective for harvesting unrooted gene trees. Trends in Microbiology. 18: 341-7. PMID 20605718 DOI: 10.1016/j.tim.2010.03.009 |
0.348 |
|
| 2009 |
Bapteste E, O'Malley MA, Beiko RG, Ereshefsky M, Gogarten JP, Franklin-Hall L, Lapointe FJ, Dupré J, Dagan T, Boucher Y, Martin W. Prokaryotic evolution and the tree of life are two different things. Biology Direct. 4: 34. PMID 19788731 DOI: 10.1186/1745-6150-4-34 |
0.65 |
|
| 2009 |
Koenig JE, Sharp C, Dlutek M, Curtis B, Joss M, Boucher Y, Doolittle WF. Integron gene cassettes and degradation of compounds associated with industrial waste: the case of the Sydney tar ponds. Plos One. 4: e5276. PMID 19390587 DOI: 10.1371/Journal.Pone.0005276 |
0.619 |
|
| 2009 |
Joss MJ, Koenig JE, Labbate M, Polz MF, Gillings MR, Stokes HW, Doolittle WF, Boucher Y. ACID: annotation of cassette and integron data. Bmc Bioinformatics. 10: 118. PMID 19383137 DOI: 10.1186/1471-2105-10-118 |
0.706 |
|
| 2009 |
Boucher Y, Bapteste E. Revisiting the concept of lineage in prokaryotes: a phylogenetic perspective. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 526-36. PMID 19319912 DOI: 10.1002/Bies.200800216 |
0.399 |
|
| 2009 |
Bapteste E, Boucher Y. Epistemological impacts of horizontal gene transfer on classification in microbiology. Methods in Molecular Biology (Clifton, N.J.). 532: 55-72. PMID 19271179 DOI: 10.1007/978-1-60327-853-9_4 |
0.436 |
|
| 2008 |
Robinson A, Guilfoyle AP, Sureshan V, Howell M, Harrop SJ, Boucher Y, Stokes HW, Curmi PM, Mabbutt BC. Structural genomics of the bacterial mobile metagenome: an overview. Methods in Molecular Biology (Clifton, N.J.). 426: 589-95. PMID 18542892 DOI: 10.1007/978-1-60327-058-8_39 |
0.423 |
|
| 2008 |
Gillings M, Boucher Y, Labbate M, Holmes A, Krishnan S, Holley M, Stokes HW. The evolution of class 1 integrons and the rise of antibiotic resistance. Journal of Bacteriology. 190: 5095-100. PMID 18487337 DOI: 10.1128/Jb.00152-08 |
0.393 |
|
| 2008 |
Bapteste E, Boucher Y. Lateral gene transfer challenges principles of microbial systematics. Trends in Microbiology. 16: 200-7. PMID 18420414 DOI: 10.1016/J.Tim.2008.02.005 |
0.434 |
|
| 2008 |
Koenig JE, Boucher Y, Charlebois RL, Nesbø C, Zhaxybayeva O, Bapteste E, Spencer M, Joss MJ, Stokes HW, Doolittle WF. Integron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sediments. Environmental Microbiology. 10: 1024-38. PMID 18190517 DOI: 10.1111/J.1462-2920.2007.01524.X |
0.768 |
|
| 2007 |
Robinson A, Guilfoyle AP, Harrop SJ, Boucher Y, Stokes HW, Curmi PM, Mabbutt BC. A putative house-cleaning enzyme encoded within an integron array: 1.8 A crystal structure defines a new MazG subtype. Molecular Microbiology. 66: 610-21. PMID 17892463 DOI: 10.1111/J.1365-2958.2007.05932.X |
0.396 |
|
| 2007 |
Boucher Y, Labbate M, Koenig JE, Stokes HW. Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends in Microbiology. 15: 301-9. PMID 17566739 DOI: 10.1016/J.Tim.2007.05.004 |
0.447 |
|
| 2007 |
Labbate M, Boucher Y, Joss MJ, Michael CA, Gillings MR, Stokes HW. Use of chromosomal integron arrays as a phylogenetic typing system for Vibrio cholerae pandemic strains. Microbiology (Reading, England). 153: 1488-98. PMID 17464063 DOI: 10.1099/Mic.0.2006/001065-0 |
0.462 |
|
| 2007 |
Case RJ, Boucher Y, Dahllöf I, Holmström C, Doolittle WF, Kjelleberg S. Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies. Applied and Environmental Microbiology. 73: 278-88. PMID 17071787 DOI: 10.1128/Aem.01177-06 |
0.641 |
|
| 2006 |
Bucknam J, Boucher Y, Bapteste E. Refuting phylogenetic relationships. Biology Direct. 1: 26. PMID 16956399 DOI: 10.1186/1745-6150-1-26 |
0.388 |
|
| 2006 |
Stokes HW, Nesbø CL, Holley M, Bahl MI, Gillings MR, Boucher Y. Class 1 integrons potentially predating the association with tn402-like transposition genes are present in a sediment microbial community. Journal of Bacteriology. 188: 5722-30. PMID 16885440 DOI: 10.1128/Jb.01950-05 |
0.403 |
|
| 2006 |
Boucher Y, Nesbø CL, Joss MJ, Robinson A, Mabbutt BC, Gillings MR, Doolittle WF, Stokes HW. Recovery and evolutionary analysis of complete integron gene cassette arrays from Vibrio. Bmc Evolutionary Biology. 6: 3. PMID 16417647 DOI: 10.1186/1471-2148-6-3 |
0.646 |
|
| 2006 |
Liu JW, Boucher Y, Stokes HW, Ollis DL. Improving protein solubility: the use of the Escherichia coli dihydrofolate reductase gene as a fusion reporter. Protein Expression and Purification. 47: 258-63. PMID 16403649 DOI: 10.1016/J.Pep.2005.11.019 |
0.343 |
|
| 2006 |
Gophna U, Thompson JR, Boucher Y, Doolittle WF. Complex histories of genes encoding 3-hydroxy-3-methylglutaryl-CoenzymeA reductase. Molecular Biology and Evolution. 23: 168-78. PMID 16162862 DOI: 10.1093/Molbev/Msj019 |
0.741 |
|
| 2005 |
Nesbø CL, Boucher Y, Dlutek M, Doolittle WF. Lateral gene transfer and phylogenetic assignment of environmental fosmid clones. Environmental Microbiology. 7: 2011-26. PMID 16309397 DOI: 10.1111/J.1462-2920.2005.00918.X |
0.612 |
|
| 2005 |
O'Malley MA, Boucher Y. Paradigm change in evolutionary microbiology. Studies in History and Philosophy of Biological and Biomedical Sciences. 36: 183-208. PMID 16120264 DOI: 10.1016/J.Shpsc.2004.12.002 |
0.646 |
|
| 2005 |
Bapteste E, Brochier C, Boucher Y. Higher-level classification of the Archaea: evolution of methanogenesis and methanogens. Archaea (Vancouver, B.C.). 1: 353-63. PMID 15876569 DOI: 10.1155/2005/859728 |
0.339 |
|
| 2004 |
Bapteste E, Boucher Y, Leigh J, Doolittle WF. Phylogenetic reconstruction and lateral gene transfer. Trends in Microbiology. 12: 406-11. PMID 15337161 DOI: 10.1016/J.Tim.2004.07.002 |
0.608 |
|
| 2004 |
Boucher Y, Douady CJ, Sharma AK, Kamekura M, Doolittle WF. Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes. Journal of Bacteriology. 186: 3980-90. PMID 15175312 DOI: 10.1128/Jb.186.12.3980-3990.2004 |
0.662 |
|
| 2004 |
Boucher Y, Kamekura M, Doolittle WF. Origins and evolution of isoprenoid lipid biosynthesis in archaea. Molecular Microbiology. 52: 515-27. PMID 15066037 DOI: 10.1111/J.1365-2958.2004.03992.X |
0.556 |
|
| 2003 |
Boucher Y, Douady CJ, Papke RT, Walsh DA, Boudreau ME, Nesbø CL, Case RJ, Doolittle WF. Lateral gene transfer and the origins of prokaryotic groups. Annual Review of Genetics. 37: 283-328. PMID 14616063 DOI: 10.1146/Annurev.Genet.37.050503.084247 |
0.61 |
|
| 2003 |
Douady CJ, Delsuc F, Boucher Y, Doolittle WF, Douzery EJ. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Molecular Biology and Evolution. 20: 248-54. PMID 12598692 DOI: 10.1093/Molbev/Msg042 |
0.51 |
|
| 2003 |
Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ. How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 358: 39-57; discussion 57. PMID 12594917 DOI: 10.1098/Rstb.2002.1185 |
0.708 |
|
| 2003 |
Blouin C, Boucher Y, Roger AJ. Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information. Nucleic Acids Research. 31: 790-7. PMID 12527789 DOI: 10.1093/Nar/Gkg151 |
0.497 |
|
| 2002 |
Boucher Y, Doolittle WF. Something new under the sea. Nature. 417: 27-8. PMID 11986648 DOI: 10.1038/417027A |
0.488 |
|
| 2001 |
Nesbø CL, Boucher Y, Doolittle WF. Defining the core of nontransferable prokaryotic genes: the euryarchaeal core. Journal of Molecular Evolution. 53: 340-50. PMID 11675594 DOI: 10.1007/S002390010224 |
0.614 |
|
| 2001 |
Boucher Y, Huber H, L'Haridon S, Stetter KO, Doolittle WF. Bacterial origin for the isoprenoid biosynthesis enzyme HMG-CoA reductase of the archaeal orders Thermoplasmatales and Archaeoglobales. Molecular Biology and Evolution. 18: 1378-88. PMID 11420376 DOI: 10.1093/Oxfordjournals.Molbev.A003922 |
0.61 |
|
| 2001 |
Boucher Y, Nesbø CL, Doolittle WF. Microbial genomes: dealing with diversity. Current Opinion in Microbiology. 4: 285-9. PMID 11378480 DOI: 10.1016/S1369-5274(00)00204-6 |
0.643 |
|
| 2000 |
Boucher Y, Doolittle WF. The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways. Molecular Microbiology. 37: 703-16. PMID 10972794 DOI: 10.1046/J.1365-2958.2000.02004.X |
0.599 |
|
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