| Year |
Citation |
Score |
| 2018 |
Sima C, Hua J, Bittner ML, Kim S, Dougherty ER. Phenotype Classification Using Moment Features of Single-Cell Data. Cancer Informatics. 17: 1176935118771701. PMID 29881253 DOI: 10.1177/1176935118771701 |
0.614 |
|
| 2017 |
Manojlovic Z, Christofferson A, Speyer G, Kim S, Liang W, Derome M, Auclair D, Craig D, Keats J, Carpten J. Abstract A32: Comprehensive analysis of molecular pathogenesis of multiple myeloma by genetic ancestry Cancer Research. 77. DOI: 10.1158/1538-7445.Newfront17-A32 |
0.344 |
|
| 2017 |
Finlay D, Aza-Blanc P, Dhruv H, Eroshkin A, Hauser C, Kiefer J, Kim S, Long T, Oshima RG, Peng S, Speyer G, Berens M, Vuori K. Abstract 1142: Novel target discovery for glioblastoma using chemical biology fingerprinting Cancer Research. 77: 1142-1142. DOI: 10.1158/1538-7445.Am2017-1142 |
0.352 |
|
| 2016 |
Gerhard DS, Clemons PA, Shamji AF, Hon C, Wagner BK, Schreiber SL, Krasnitz A, Sordella R, Sander C, Lowe SW, Powers S, Smith K, Aburi M, Iavarone A, Lasorella A, ... ... Kim S, et al. Transforming Big Data into cancer-relevant insight: An initial, multi-tier approach to assess reproducibility and relevance. Molecular Cancer Research : McR. PMID 27401613 DOI: 10.1158/1541-7786.Mcr-16-0090 |
0.328 |
|
| 2016 |
Keats JJ, Speyer G, Christofferson A, Legendre C, Aldrich J, Russell M, Cuyugan L, Adkins J, Blanski A, Hodges M, Rohrer D, Jagannath S, Vij R, Orloff G, Zimmerman T, ... ... Kim S, et al. Molecular Predictors of Outcome and Drug Response in Multiple Myeloma: An Interim Analysis of the Mmrf CoMMpass Study Blood. 128: 194-194. DOI: 10.1182/Blood.V128.22.194.194 |
0.335 |
|
| 2016 |
Speyer G, Dhruv H, Kiefer J, Schreiber S, Clemons P, Berens ME, Kim S. Abstract 1520: Identifying differential dependency networks accounting for response to NEDD8-inhibitor in large-scale cancer cell line data Cancer Research. 76: 1520-1520. DOI: 10.1158/1538-7445.Am2016-1520 |
0.371 |
|
| 2016 |
Carson VM, Kim S, Inge LJ, Whitsett TG. Abstract 1253: Inhibition of FN14 to suppress KRAS-driven lung cancer migration and survival Cancer Research. 76: 1253-1253. DOI: 10.1158/1538-7445.Am2016-1253 |
0.31 |
|
| 2015 |
Manojlovic Z, Christofferson A, Legendre C, Spreyer G, Kim S, Liang W, Mulligan G, Kidd PG, Jewell S, Derome M, Troups J, Auclair D, Lonial S, Craig D, Keats JJ, et al. In-Depth Molecular Profiling of Multiple Myeloma in African Americans Blood. 126: 2973-2973. DOI: 10.1182/Blood.V126.23.2973.2973 |
0.332 |
|
| 2015 |
Joy A, Ramesh A, Smirnov I, Reiser M, Mills G, Kim S, Feuerstein B. Abstract B15: Mapping topology of PI3K/AKT/mTOR signaling in glioblastoma molecular subgroups Molecular Cancer Therapeutics. 14. DOI: 10.1158/1538-8514.Pi3K14-B15 |
0.325 |
|
| 2015 |
Finlay D, Dhruv H, Evers L, Peng S, Kiefer J, Kim S, Raizer J, Berens M, Vuori K. Abstract 4671: Identification of novel drugs for glioblastoma using chemical biology fingerprinting Cancer Research. 75: 4671-4671. DOI: 10.1158/1538-7445.Am2015-4671 |
0.331 |
|
| 2015 |
Joy AM, Smirnov I, Reiser M, Kim S, Feuerstein B. Abstract 1095:In silicomapping of oncogene networks implicate the WNT pathway in the glioblastoma MES subtype Cancer Research. 75: 1095-1095. DOI: 10.1158/1538-7445.Am2015-1095 |
0.31 |
|
| 2015 |
Dhruv H, Kim S, Kiefer J, Jung S, Emig-Agius D, Ivliev A, Finlay D, Aza-Blanc P, Vouri K, Berens M. Geno-13Network-Based Approach Aids In The Discovery Of Context-Specific Druggable Targets For Treatment Of Glioblastoma Neuro-Oncology. 17. DOI: 10.1093/Neuonc/Nov215.13 |
0.376 |
|
| 2015 |
Joy A, Smirnov I, Reiser M, Mills G, Kim S, Feuerstein B. Csig-08Nitrosoureas Improve Survival In The Secondary-Like Akt Subtype Of Glioblastoma Neuro-Oncology. 17. DOI: 10.1093/Neuonc/Nov210.08 |
0.332 |
|
| 2015 |
Dhruv H, Finlay D, Evers L, Peng S, Kiefer J, Kim S, Raizer J, Vouri K, Berens M. Atps-16Identification Of Clinically Relevant Drugs For Glioblastoma With Specific Molecular Signature Using Chemical Biology Fingerprinting Neuro-Oncology. 17. DOI: 10.1093/Neuonc/Nov204.16 |
0.378 |
|
| 2014 |
Joy A, Ramesh A, Smirnov I, Reiser M, Misra A, Shapiro WR, Mills GB, Kim S, Feuerstein BG. AKT pathway genes define 5 prognostic subgroups in glioblastoma. Plos One. 9: e100827. PMID 24984002 DOI: 10.1371/Journal.Pone.0100827 |
0.366 |
|
| 2014 |
Paoloni M, Webb C, Mazcko C, Cherba D, Hendricks W, Lana S, Ehrhart EJ, Charles B, Fehling H, Kumar L, Vail D, Henson M, Childress M, Kitchell B, Kingsley C, ... Kim S, et al. Prospective molecular profiling of canine cancers provides a clinically relevant comparative model for evaluating personalized medicine (PMed) trials. Plos One. 9: e90028. PMID 24637659 DOI: 10.1371/Journal.Pone.0090028 |
0.347 |
|
| 2014 |
Jung S, Kim S. EDDY: a novel statistical gene set test method to detect differential genetic dependencies. Nucleic Acids Research. 42: e60. PMID 24500204 DOI: 10.1093/Nar/Gku099 |
0.406 |
|
| 2014 |
Berens ME, Kim S, Kiefer J, Dhruv H, Vuori K, Findlay B, Hauser C, Oshima R, Alza-Blanc P, Emig D. CONTEXT OF VULNERABILITY OF GBM: DESCRIPTIVE GENOMICS LEADING TO EMPIRIC THERAPEUTICS Neuro-Oncology. 16: iii34-iii35. DOI: 10.1093/Neuonc/Nou208.44 |
0.343 |
|
| 2013 |
Baker A, Braggio E, Jacobus S, Jung S, Larson D, Therneau T, Dispenzieri A, Van Wier SA, Ahmann G, Levy J, Perkins L, Kim S, Henderson K, Vesole D, Rajkumar SV, et al. Uncovering the biology of multiple myeloma among African Americans: a comprehensive genomics approach. Blood. 121: 3147-52. PMID 23422747 DOI: 10.1182/Blood-2012-07-443606 |
0.312 |
|
| 2013 |
Jung S, Verdicchio M, Kiefer J, Von Hoff D, Berens M, Bittner M, Kim S. Learning contextual gene set interaction networks of cancer with condition specificity. Bmc Genomics. 14: 110. PMID 23418942 DOI: 10.1186/1471-2164-14-110 |
0.338 |
|
| 2013 |
Jung S, Kim S, Kiefer J, Berens ME. Abstract PR12: Identifying different functional mechanisms of invasion from mesenchymal and proneural subtypes of glioblastoma Cancer Research. 73. DOI: 10.1158/1538-7445.Tim2013-Pr12 |
0.397 |
|
| 2013 |
Yin H, Chow D, Sereduk C, Aziz M, Kim S, Brown KM, Trent JM. Abstract 3151: High-throughput RNAi screening identifies a novel metastatic melanoma drug target in the context of PTEN mutation. Cancer Research. 73: 3151-3151. DOI: 10.1158/1538-7445.Am2013-3151 |
0.332 |
|
| 2013 |
Emig D, Kim S, Lancasjore L, Nikolsky Y, Berens ME, Bessarabova M. Abstract 2892: Refined molecular subtyping of GBM discovers both shared and unique therapeutic targets. Cancer Research. 73: 2892-2892. DOI: 10.1158/1538-7445.Am2013-2892 |
0.363 |
|
| 2013 |
Baker AS, Braggio E, Jacobus S, Jung S, Larson D, Therneau T, Dispenzieri A, Wier SAV, Ahmann G, Levy J, Perkins L, Kim S, Henderson K, Vesole D, Rajkumar SV, et al. Abstract 2021: Characterization of myeloma tumors from a multi-ethnic cohort using cytogenetics and genomic analysis. Cancer Research. 73: 2021-2021. DOI: 10.1158/1538-7445.Am2013-2021 |
0.305 |
|
| 2013 |
Dhruv HD, Kim S, Kiefer J, Emig-Agius D, Finlay D, Jung S, Vuori K, Berens M. Abstract C223: Network-based approach aids in the discovery of context-specific druggable targets for treatment of glioblastoma. Molecular Cancer Therapeutics. 12. DOI: 10.1158/1535-7163.Targ-13-C223 |
0.368 |
|
| 2012 |
Jung S, Kim S, Gale M, Cherni I, Fonseca R, Carpten J, Salhia B. DNA methylation in multiple myeloma is weakly associated with gene transcription. Plos One. 7: e52626. PMID 23285118 DOI: 10.1371/Journal.Pone.0052626 |
0.318 |
|
| 2012 |
Baker AS, Braggio E, Jacobus S, Keats J, Jung S, Larson D, Therneau T, Dispenzieri A, Weir SAV, Ahmann G, Henderson K, Rajkumar SV, Jelinek D, Kim S, Carpten J, et al. Abstract 5064: Cytogenetic and somatic characterization of myeloma tumors from a multi-ethnic cohort Cancer Research. 72: 5064-5064. DOI: 10.1158/1538-7445.Am2012-5064 |
0.305 |
|
| 2012 |
Nasser S, Kiefer J, Armstrong B, Berens M, Kim S. Abstract 4917: Aligning xenograft models to glioblastoma (GB) patient tumors to assess chemovulnerability of patients Cancer Research. 72: 4917-4917. DOI: 10.1158/1538-7445.Am2012-4917 |
0.403 |
|
| 2012 |
Joy AM, Ramesh A, Smirnov I, Misra A, Shapiro W, Phillips H, Aldape K, Mills G, Kim S, Feuerstein B. Abstract 3688: Akt pathway genes classify GBM into 6 prognostic subgroups with different clinical and molecular features Cancer Research. 72: 3688-3688. DOI: 10.1158/1538-7445.Am2012-3688 |
0.347 |
|
| 2011 |
Nasser S, Cunliffe HE, Black MA, Kim S. Context-specific gene regulatory networks subdivide intrinsic subtypes of breast cancer. Bmc Bioinformatics. 12: S3. PMID 21489222 DOI: 10.1186/1471-2105-12-S2-S3 |
0.328 |
|
| 2011 |
Arora S, Ranade AR, Tran NL, Nasser S, Sridhar S, Korn RL, Ross JT, Dhruv H, Foss KM, Sibenaller Z, Ryken T, Gotway MB, Kim S, Weiss GJ. MicroRNA-328 is associated with (non-small) cell lung cancer (NSCLC) brain metastasis and mediates NSCLC migration. International Journal of Cancer. Journal International Du Cancer. 129: 2621-31. PMID 21448905 DOI: 10.1002/Ijc.25939 |
0.301 |
|
| 2011 |
Brooks BR, Yin H, Chow D, Sereduk C, Koeman J, Qian C, MacKeigan JP, Jung S, Kim S, Xu M, Weeraratna A, Brown KM, Trent J. Abstract 4984: Association ofPTENandp16mutational status withMITFexpression may provide a novel context for a phenotype switch in melanoma Cancer Research. 71: 4984-4984. DOI: 10.1158/1538-7445.Am2011-4984 |
0.365 |
|
| 2011 |
Joy AM, Smirnov I, Ramesh A, Kim S, Bachoo R, Sarkaria J, Ram P, Shapiro W, Mills G, Feuerstein B. Abstract 4138: Five prognostic subgroups differ in expression of Akt pathway genes: Biomarkers for therapy selection Cancer Research. 71: 4138-4138. DOI: 10.1158/1538-7445.Am2011-4138 |
0.407 |
|
| 2011 |
Arora S, Ranade AR, Tran NL, Nasser S, Sridhar S, Ross JTD, Dhruv H, Kim S, Weiss GJ. Abstract 127: MicroRNA-328 is associated with non-small cell lung cancer (NSCLC) brain metastasis and mediates NSCLC migration Cancer Research. 71: 127-127. DOI: 10.1158/1538-7445.Am2011-127 |
0.313 |
|
| 2009 |
Dougherty ER, Huang Y, Kim S, Cai X, Yamaguchi R. Genomic signal processing. Current Genomics. 10: 364. PMID 20190951 DOI: 10.2174/138920209789177593 |
0.486 |
|
| 2009 |
Gowda T, Vrudhula S, Kim S. Prediction of pairwise gene interaction using threshold logic. Annals of the New York Academy of Sciences. 1158: 276-86. PMID 19348649 DOI: 10.1111/J.1749-6632.2008.03763.X |
0.395 |
|
| 2009 |
Gowda T, Vrudhula S, Kim S. Modeling of gene regulatory network dynamics using threshold logic. Annals of the New York Academy of Sciences. 1158: 71-81. PMID 19348633 DOI: 10.1111/J.1749-6632.2008.03754.X |
0.37 |
|
| 2009 |
Tari L, Baral C, Kim S. Fuzzy c-means clustering with prior biological knowledge. Journal of Biomedical Informatics. 42: 74-81. PMID 18595779 DOI: 10.1016/J.Jbi.2008.05.009 |
0.326 |
|
| 2009 |
Ustach CV, Han H, Kim S, Hostetter G, Diep CH, Hidalgo M, Barret M, Keats JJ, Hoff DV, Kingsley C. Abstract A30: Integrated analysis of genomic data and annotations in cancer research Molecular Cancer Therapeutics. 8. DOI: 10.1158/1535-7163.Targ-09-A30 |
0.374 |
|
| 2007 |
Brun M, Kim S, Choi W, Dougherty ER. Comparison of gene regulatory networks via steady-state trajectories. Eurasip Journal On Bioinformatics & Systems Biology. 82702. PMID 18309365 DOI: 10.1155/2007/82702 |
0.48 |
|
| 2007 |
Kim S, Sen I, Bittner M. Mining molecular contexts of cancer via in-silico conditioning. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 169-79. PMID 17951822 |
0.307 |
|
| 2007 |
Chng WJ, Kumar S, Vanwier S, Ahmann G, Price-Troska T, Henderson K, Chung TH, Kim S, Mulligan G, Bryant B, Carpten J, Gertz M, Rajkumar SV, Lacy M, Dispenzieri A, et al. Molecular dissection of hyperdiploid multiple myeloma by gene expression profiling. Cancer Research. 67: 2982-9. PMID 17409404 DOI: 10.1158/0008-5472.Can-06-4046 |
0.341 |
|
| 2006 |
Suh EB, Dougherty ER, Kim S, Bittner ML, Chen Y, Russ DE, Martino RL. Parallel computation and visualization tools for codetermination analysis of multivariate gene expression relations Computational and Statistical Approaches to Genomics. 297-310. DOI: 10.1007/0-387-26288-1_15 |
0.417 |
|
| 2005 |
Baker AS, Chung T, Pidgeon TS, Mancini C, Price-Troska T, Wier SV, Ahmann GJ, Rempel R, Greipp PR, Kyle RA, Rajkumar SV, Dispenzieri A, Gertz MA, Bruhn L, Anderson P, ... ... Kim S, et al. A Comparative Analysis of Chromosome 13 Gene Expression and Copy Number Changes in Multiple Myeloma Using Array-Based Methods. Blood. 106: 1557-1557. DOI: 10.1182/Blood.V106.11.1557.1557 |
0.346 |
|
| 2005 |
Masri AA, Price-Troska T, Chesi M, Chung T, Kim S, Carpten J, Bergsagel PL, Fonseca R. MicroRNA Expression Analysis in Multiple Myeloma. Blood. 106: 1554-1554. DOI: 10.1182/Blood.V106.11.1554.1554 |
0.323 |
|
| 2005 |
Chng W, Wier SV, Ahmann G, Price-Troska T, Henderson K, Chesi M, Chung T, Kim S, Carpten J, Gertz M, Rajkumar SV, Lacy M, Kyle R, Greipp P, Dispenzieri A, et al. Gene Expression Profiling of Hyperdiploid Multiple Reveal Complex Gene Dosage Effects and an mRNA Translation/Protein Synthesis Signature. Blood. 106: 1538-1538. DOI: 10.1182/Blood.V106.11.1538.1538 |
0.361 |
|
| 2005 |
Silva PJS, Hashimoto RF, Kim S, Barrera J, Brandão LO, Suh E, Dougherty ER. Feature selection algorithms to find strong genes Pattern Recognition Letters. 26: 1444-1453. DOI: 10.1016/J.Patrec.2004.11.017 |
0.546 |
|
| 2004 |
Hashimoto RF, Kim S, Shmulevich I, Zhang W, Bittner ML, Dougherty ER. Growing genetic regulatory networks from seed genes. Bioinformatics (Oxford, England). 20: 1241-7. PMID 14871865 DOI: 10.1093/Bioinformatics/Bth074 |
0.536 |
|
| 2004 |
Chung T, Kim S, Baker AS, Price-Troska T, Xu R, Ghobrial I, Greipp PR, Rajkumar SV, Gertz MA, Wier SAV, Ahmann GJ, Carpten J, Fonseca R. Characterization of Waldenström Macroglobulinemia Subtypes using Global Gene Expression Profiling. Blood. 104: 786-786. DOI: 10.1182/Blood.V104.11.786.786 |
0.372 |
|
| 2003 |
Bomprezzi R, Ringnér M, Kim S, Bittner ML, Khan J, Chen Y, Elkahloun A, Yu A, Bielekova B, Meltzer PS, Martin R, McFarland HF, Trent JM. Gene expression profile in multiple sclerosis patients and healthy controls: identifying pathways relevant to disease. Human Molecular Genetics. 12: 2191-9. PMID 12915464 DOI: 10.1093/Hmg/Ddg221 |
0.33 |
|
| 2003 |
Morikawa J, Li H, Kim S, Nishi K, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W, Kobayashi T. Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARalpha). International Journal of Oncology. 23: 617-25. PMID 12888896 |
0.433 |
|
| 2003 |
Brun M, Sabbagh DL, Kim S, Dougherty ER. Corrected small-sample estimation of the Bayes error. Bioinformatics (Oxford, England). 19: 944-51. PMID 12761056 DOI: 10.1093/Bioinformatics/Btg144 |
0.486 |
|
| 2003 |
Kobayashi T, Yamaguchi M, Kim S, Morikawa J, Ogawa S, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W. Microarray reveals differences in both tumors and vascular specific gene expression in de novo CD5+ and CD5- diffuse large B-cell lymphomas. Cancer Research. 63: 60-6. PMID 12517778 |
0.385 |
|
| 2003 |
Morikawa J, Li H, Kim S, Nishi K, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W, Kobayashi T. Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARα) International Journal of Oncology. 23: 617-625. DOI: 10.3892/Ijo.23.3.617 |
0.494 |
|
| 2002 |
Kim S, Dougherty ER, Shmulevich I, Hess KR, Hamilton SR, Trent JM, Fuller GN, Zhang W. Identification of combination gene sets for glioma classification. Molecular Cancer Therapeutics. 1: 1229-36. PMID 12479704 |
0.511 |
|
| 2002 |
Kim S, Dougherty ER, Barrera J, Chen Y, Bittner ML, Trent JM. Strong feature sets from small samples. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 127-46. PMID 11911798 DOI: 10.1089/10665270252833226 |
0.524 |
|
| 2002 |
Dougherty ER, Barrera J, Brun M, Kim S, Cesar RM, Chen Y, Bittner M, Trent JM. Inference from clustering with application to gene-expression microarrays. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 105-26. PMID 11911797 DOI: 10.1089/10665270252833217 |
0.473 |
|
| 2002 |
Shmulevich I, Dougherty ER, Kim S, Zhang W. Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics (Oxford, England). 18: 261-74. PMID 11847074 DOI: 10.1093/Bioinformatics/18.2.261 |
0.516 |
|
| 2002 |
Kim S, Li H, Dougherty ER, Cao N, Chen Y, Bittner M, Suh EB. Can Markov chain models mimic biological regulation? Journal of Biological Systems. 10: 337-357. DOI: 10.1142/S0218339002000676 |
0.521 |
|
| 2002 |
Balagurunathan Y, Hashimoto RF, Kim S, Barrera J, Dougherty ER. Granulometric classifiers from small samples Proceedings of Spie - the International Society For Optical Engineering. 4667: 100-107. DOI: 10.1117/12.467971 |
0.628 |
|
| 2001 |
Dougherty E, Barrera J, Brun M, Kim S, Marcondes R, Chen Y, Bittner M, Trent J. Clustering algorithms: can anything be concluded? Nature Genetics. 27: 51-51. DOI: 10.1038/87060 |
0.419 |
|
| 2001 |
Dougherty ER, Barrera J, Mozelle G, Kim S, Brun M. Multiresolution analysis for optimal binary filters Journal of Mathematical Imaging and Vision. 14: 53-72. DOI: 10.1023/A:1008311431244 |
0.437 |
|
| 2000 |
Kim S, Dougherty ER, Bittner ML, Chen Y, Sivakumar K, Meltzer P, Trent JM. General nonlinear framework for the analysis of gene interaction via multivariate expression arrays. Journal of Biomedical Optics. 5: 411-24. PMID 11092429 DOI: 10.1117/1.1289142 |
0.546 |
|
| 2000 |
Kim S, Dougherty ER, Chen Y, Sivakumar K, Meltzer P, Trent JM, Bittner M. Multivariate measurement of gene expression relationships. Genomics. 67: 201-9. PMID 10903845 DOI: 10.1006/Geno.2000.6241 |
0.556 |
|
| 2000 |
Dougherty ER, Barrera J, Mozelle G, Kim S, Brun M. Multiresolution filter design Electronic Imaging. 3961: 12-21. DOI: 10.1117/12.379392 |
0.44 |
|
| 2000 |
Dougherty ER, Kim S, Chen Y. Coefficient of determination in nonlinear signal processing Signal Processing. 80: 2219-2235. DOI: 10.1016/S0165-1684(00)00079-7 |
0.478 |
|
| 1999 |
Dougherty ER, Kim S, Bittner ML, Chen Y, Sivakumar K, Meltzer P, Trent JM. Nonlinear stochastic determination for gene expressions via cDNA microarrays Nature Genetics. 23: 41-41. DOI: 10.1038/14294 |
0.499 |
|
| 1998 |
Kim S, Batman S, Dougherty ER. A fast run-length-based algorithm for one-dimensional flat opening Proceedings of Spie - the International Society For Optical Engineering. 3452: 158-163. DOI: 10.1117/12.323467 |
0.344 |
|
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