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Hari Shroff, Ph.D. - Publications

Affiliations: 
Physics University of Maryland, College Park, College Park, MD 
 2006 University of California, Berkeley, Berkeley, CA, United States 
Area:
structural characterization of nucleo-protein assemblies
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Guo M, Li Y, Su Y, Lambert T, Nogare DD, Moyle MW, Duncan LH, Ikegami R, Santella A, Rey-Suarez I, Green D, Beiriger A, Chen J, Vishwasrao H, Ganesan S, ... ... Shroff H, et al. Rapid image deconvolution and multiview fusion for optical microscopy. Nature Biotechnology. PMID 32601431 DOI: 10.1038/S41587-020-0560-X  0.365
2019 Peluso EA, Updegrove TB, Chen J, Shroff H, Ramamurthi KS. A 2-dimensional ratchet model describes assembly initiation of a specialized bacterial cell surface. Proceedings of the National Academy of Sciences of the United States of America. PMID 31597735 DOI: 10.1073/Pnas.1907397116  0.321
2019 Chandler T, Shroff H, Oldenbourg R, Rivière P. Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 36: 1346-1360. PMID 31503560 DOI: 10.1364/Josaa.36.001346  0.325
2019 Chandler T, Shroff H, Oldenbourg R, La Rivière P. Spatio-angular fluorescence microscopy I. Basic theory. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 36: 1334-1345. PMID 31503559 DOI: 10.1364/Josaa.36.001334  0.32
2019 Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal of Visualized Experiments : Jove. PMID 31233035 DOI: 10.3791/59533  0.374
2018 Wu Y, Shroff H. Faster, sharper, and deeper: structured illumination microscopy for biological imaging. Nature Methods. PMID 30478322 DOI: 10.1038/S41592-018-0211-Z  0.336
2018 Markwardt ML, Snell NE, Guo M, Wu Y, Christensen R, Liu H, Shroff H, Rizzo MA. A Genetically Encoded Biosensor Strategy for Quantifying Non-muscle Myosin II Phosphorylation Dynamics in Living Cells and Organisms. Cell Reports. 24: 1060-1070.e4. PMID 30044973 DOI: 10.1016/J.Celrep.2018.06.088  0.307
2018 Xu M, Wu Y, Shroff H, Wu M, Mani M. A scheme for 3-dimensional morphological reconstruction and force inference in the early C. elegans embryo. Plos One. 13: e0199151. PMID 29990323 DOI: 10.1371/Journal.Pone.0199151  0.334
2018 Shroff H. Biological Imaging at High Spatiotemporal Resolution Microscopy and Microanalysis. 24: 1350-1351. DOI: 10.1017/S1431927618007237  0.323
2017 Wu Y, Kumar A, Smith C, Ardiel E, Chandris P, Christensen R, Rey-Suarez I, Guo M, Vishwasrao HD, Chen J, Tang J, Upadhyaya A, La Riviere PJ, Shroff H. Reflective imaging improves spatiotemporal resolution and collection efficiency in light sheet microscopy. Nature Communications. 8: 1452. PMID 29129912 DOI: 10.1038/S41467-017-01250-8  0.377
2017 Giannini JP, York AG, Shroff H. Anticipating, measuring, and minimizing MEMS mirror scan error to improve laser scanning microscopy's speed and accuracy. Plos One. 12: e0185849. PMID 28973013 DOI: 10.1371/Journal.Pone.0185849  0.306
2017 Laissue PP, Alghamdi RA, Tomancak P, Reynaud EG, Shroff H. Assessing phototoxicity in live fluorescence imaging. Nature Methods. 14: 657-661. PMID 28661494 DOI: 10.1038/Nmeth.4344  0.321
2017 Zheng W, Wu Y, Winter P, Fischer R, Nogare DD, Hong A, McCormick C, Christensen R, Dempsey WP, Arnold DB, Zimmerberg J, Chitnis A, Sellers J, Waterman C, Shroff H. Adaptive optics improves multiphoton super-resolution imaging. Nature Methods. PMID 28628128 DOI: 10.1038/Nmeth.4337  0.331
2017 Trcek T, Lionnet T, Shroff H, Lehmann R. mRNA quantification using single-molecule FISH in Drosophila embryos. Nature Protocols. 12: 1326-1348. PMID 28594816 DOI: 10.1038/Nprot.2017.030  0.335
2017 Combs CA, Shroff H. Fluorescence Microscopy: A Concise Guide to Current Imaging Methods. Current Protocols in Neuroscience. 79: 2.1.1-2.1.25. PMID 28398640 DOI: 10.1002/Cpns.29  0.351
2016 Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM). The Biological Bulletin. 231: 26-39. PMID 27638693 DOI: 10.1086/689589  0.344
2016 Maltsev VA, Maltsev AV, Juhaszova M, Sirenko S, Monfredi O, Shroff H, York A, Sollott SJ, Lakatta EG, Stern MD. Cardiac Pacemaker Cell Function at a Super-Resolution Scale of SIM: Distribution of RyRs, Calcium Dynamics, and Numerical Modeling Biophysical Journal. 110: 267a. DOI: 10.1016/J.Bpj.2015.11.1455  0.301
2015 Curd A, Cleasby A, Makowska K, York A, Shroff H, Peckham M. Construction of an instant structured illumination microscope. Methods (San Diego, Calif.). 88: 37-47. PMID 26210400 DOI: 10.1016/J.Ymeth.2015.07.012  0.391
2015 Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z. WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. Bmc Bioinformatics. 16: 189. PMID 26051157 DOI: 10.1186/S12859-015-0627-8  0.303
2015 Winter PW, Chandris P, Fischer RS, Wu Y, Waterman CM, Shroff H. Incoherent structured illumination improves optical sectioning and contrast in multiphoton super-resolution microscopy. Optics Express. 23: 5327-34. PMID 25836564 DOI: 10.1364/Oe.23.005327  0.347
2015 Temprine K, York AG, Shroff H. Three-dimensional photoactivated localization microscopy with genetically expressed probes. Methods in Molecular Biology (Clifton, N.J.). 1251: 231-61. PMID 25391803 DOI: 10.1007/978-1-4939-2080-8_13  0.36
2015 Christensen R, Bokinsky A, Santella A, Wu Y, Marquina J, Kovacevic I, Kumar A, Winter P, McCreedy E, Mohler W, Bao Z, Colón-Ramos D, Shroff H. An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9334. DOI: 10.1117/12.2082394  0.32
2014 Kumar A, Wu Y, Christensen R, Chandris P, Gandler W, McCreedy E, Bokinsky A, Colón-Ramos DA, Bao Z, McAuliffe M, Rondeau G, Shroff H. Dual-view plane illumination microscopy for rapid and spatially isotropic imaging. Nature Protocols. 9: 2555-73. PMID 25299154 DOI: 10.1038/Nprot.2014.172  0.337
2014 Winter PW, Shroff H. Faster fluorescence microscopy: advances in high speed biological imaging. Current Opinion in Chemical Biology. 20: 46-53. PMID 24815857 DOI: 10.1016/J.Cbpa.2014.04.008  0.357
2014 Ingaramo M, York AG, Hoogendoorn E, Postma M, Shroff H, Patterson GH. Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 15: 794-800. PMID 24436314 DOI: 10.1002/Cphc.201300831  0.347
2013 Zhao H, Casillas E, Shroff H, Patterson GH, Schuck P. Tools for the Quantitative Analysis of Sedimentation Boundaries Detected by Fluorescence Optical Analytical Ultracentrifugation Plos One. 8. PMID 24204779 DOI: 10.1371/Journal.Pone.0077245  0.304
2013 Wu Y, Wawrzusin P, Senseney J, Fischer RS, Christensen R, Santella A, York AG, Winter PW, Waterman CM, Bao Z, Colón-Ramos DA, McAuliffe M, Shroff H. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. Nature Biotechnology. 31: 1032-8. PMID 24108093 DOI: 10.1038/Nbt.2713  0.355
2013 York AG, Chandris P, Nogare DD, Head J, Wawrzusin P, Fischer RS, Chitnis A, Shroff H. Instant super-resolution imaging in live cells and embryos via analog image processing. Nature Methods. 10: 1122-6. PMID 24097271 DOI: 10.1038/Nmeth.2687  0.38
2013 Wu Y, Christensen R, Colón-Ramos D, Shroff H. Advanced optical imaging techniques for neurodevelopment. Current Opinion in Neurobiology. 23: 1090-7. PMID 23831260 DOI: 10.1016/J.Conb.2013.06.008  0.363
2013 Takagi Y, Ushakov D, Ma X, Temprine K, Sellers JR, Shroff H, Peckham M. 3D Palm Shows Distinct Distributions of Z-Disc Proteins with the Z-Discs in Cardiomyocytes Biophysical Journal. 104: 485a. DOI: 10.1016/J.Bpj.2012.11.2676  0.321
2012 York AG, Parekh SH, Dalle Nogare D, Fischer RS, Temprine K, Mione M, Chitnis AB, Combs CA, Shroff H. Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy. Nature Methods. 9: 749-54. PMID 22581372 DOI: 10.1038/Nmeth.2025  0.381
2011 Fischer RS, Wu Y, Kanchanawong P, Shroff H, Waterman CM. Microscopy in 3D: a biologist's toolbox. Trends in Cell Biology. 21: 682-91. PMID 22047760 DOI: 10.1016/J.Tcb.2011.09.008  0.354
2011 Wu Y, Ghitani A, Christensen R, Santella A, Du Z, Rondeau G, Bao Z, Colón-Ramos D, Shroff H. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 108: 17708-13. PMID 22006307 DOI: 10.1073/Pnas.1108494108  0.338
2011 York AG, Ghitani A, Vaziri A, Davidson MW, Shroff H. Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes. Nature Methods. 8: 327-33. PMID 21317909 DOI: 10.1038/Nmeth.1571  0.365
2010 Frost NA, Shroff H, Kong H, Betzig E, Blanpied TA. Single-molecule discrimination of discrete perisynaptic and distributed sites of actin filament assembly within dendritic spines. Neuron. 67: 86-99. PMID 20624594 DOI: 10.1016/J.Neuron.2010.05.026  0.616
2009 Greenfield D, McEvoy AL, Shroff H, Crooks GE, Wingreen NS, Betzig E, Liphardt J. Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy. Plos Biology. 7: e1000137. PMID 19547746 DOI: 10.1371/Journal.Pbio.1000137  0.603
2009 Vaziri A, Tang J, Shroff H, Shank CV. Multilayer and three-dimensional super-resolution imaging of thick biological samples Optics Infobase Conference Papers. DOI: 10.1364/Ntm.2009.Nmb1  0.354
2009 Vaziri A, Tang J, Shroff H, Shank C. Three-dimensional super-resolution imaging of thick biological samples Microscopy and Microanalysis. 15: 36-37. DOI: 10.1017/S1431927609092368  0.316
2008 Ji N, Shroff H, Zhong H, Betzig E. Advances in the speed and resolution of light microscopy. Current Opinion in Neurobiology. 18: 605-16. PMID 19375302 DOI: 10.1016/J.Conb.2009.03.009  0.361
2008 Vaziri A, Tang J, Shroff H, Shank CV. Multilayer three-dimensional super resolution imaging of thick biological samples Proceedings of the National Academy of Sciences of the United States of America. 105: 20221-20226. PMID 19088193 DOI: 10.1016/J.Bpj.2008.12.989  0.398
2008 Shroff H, White H, Betzig E. Photoactivated localization microscopy (PALM) of adhesion complexes. Current Protocols in Cell Biology / Editorial Board, Juan S. Bonifacino ... [Et Al.]. Unit 4.21. PMID 19085989 DOI: 10.1002/0471143030.Cb0421S41  0.385
2008 Shroff H, Galbraith CG, Galbraith JA, Betzig E. Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics. Nature Methods. 5: 417-23. PMID 18408726 DOI: 10.1038/Nmeth.1202  0.365
2008 Manley S, Gillette JM, Patterson GH, Shroff H, Hess HF, Betzig E, Lippincott-Schwartz J. High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nature Methods. 5: 155-7. PMID 18193054 DOI: 10.1038/Nmeth.1176  0.325
2008 Shroff H, Sivak D, Siegel JJ, McEvoy AL, Siu M, Spakowitz A, Geissler PL, Liphardt J. Optical measurement of mechanical forces inside short DNA loops. Biophysical Journal. 94: 2179-86. PMID 18065484 DOI: 10.1529/Biophysj.107.114413  0.677
2007 Shroff H, Galbraith CG, Galbraith JA, White H, Gillette J, Olenych S, Davidson MW, Betzig E. Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes. Proceedings of the National Academy of Sciences of the United States of America. 104: 20308-13. PMID 18077327 DOI: 10.1073/Pnas.0710517105  0.387
2006 Pauzauskie PJ, Radenovic A, Trepagnier E, Shroff H, Yang P, Liphardt J. Optical trapping and integration of semiconductor nanowire assemblies in water. Nature Materials. 5: 97-101. PMID 16429143 DOI: 10.1038/Nmat1563  0.618
2005 Shroff H, Reinhard BM, Siu M, Agarwal H, Spakowitz A, Liphardt J. Biocompatible force sensor with optical readout and dimensions of 6 nm3. Nano Letters. 5: 1509-14. PMID 16178266 DOI: 10.1021/Nl050875H  0.674
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