Scott C. Schmidler, Ph.D. - Publications

Affiliations: 
2002 Stanford University, Palo Alto, CA 
Area:
Bioinformatics

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Larson G, Thorne JL, Schmidler S. Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 32053390 DOI: 10.1089/Cmb.2019.0500  0.32
2017 Cooke B, Herzog DP, Mattingly JC, McKinley SA, Schmidler SC. Geometric ergodicity of two-dimensional Hamiltonian systems with a Lennard–Jones-like repulsive potential Communications in Mathematical Sciences. 15: 1987-2025. DOI: 10.4310/Cms.2017.V15.N7.A10  0.324
2017 VanDerwerken D, Schmidler SC. Monitoring Joint Convergence of MCMC Samplers Journal of Computational and Graphical Statistics. 26: 558-568. DOI: 10.1080/10618600.2017.1297240  0.338
2014 Rodriguez A, Schmidler SC. BAYESIAN PROTEIN STRUCTURE ALIGNMENT. The Annals of Applied Statistics. 8: 2068-2095. PMID 26925188 DOI: 10.1214/14-Aoas780  0.482
2014 Herman JL, Challis CJ, Novák Á, Hein J, Schmidler SC. Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure. Molecular Biology and Evolution. 31: 2251-66. PMID 24899668 DOI: 10.1093/Molbev/Msu184  0.437
2014 Rodriguez A, Schmidler SC. Bayesian protein structure alignment Annals of Applied Statistics. 8: 2068-2095. DOI: 10.1214/14-AOAS780  0.319
2014 Wang R, Schmidler SC. Bayesian multiple protein structure alignment Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8394: 326-339. DOI: 10.1007/978-3-319-05269-4-27  0.327
2013 Ji C, Schmidler SC. Adaptive Markov chain Monte Carlo for Bayesian variable selection Journal of Computational and Graphical Statistics. 22: 708-728. DOI: 10.1080/10618600.2013.819178  0.328
2012 Challis CJ, Schmidler SC. A stochastic evolutionary model for protein structure alignment and phylogeny. Molecular Biology and Evolution. 29: 3575-87. PMID 22723302 DOI: 10.1093/Molbev/Mss167  0.436
2012 Wolpert RL, Schmidler SC. α-Stable limit laws for harmonic mean estimators of marginal likelihoods Statistica Sinica. 22: 1233-1251. DOI: 10.5705/Ss.2010.221  0.322
2010 Wilson MA, Iversen ES, Clyde MA, Schmidler SC, Schildkraut JM. BAYESIAN MODEL SEARCH AND MULTILEVEL INFERENCE FOR SNP ASSOCIATION STUDIES. The Annals of Applied Statistics. 4: 1342-1364. PMID 21179394 DOI: 10.1214/09-Aoas322  0.302
2009 Woodard DB, Schmidler SC, Huber M. Sufficient conditions for torpid mixing of parallel and simulated tempering Electronic Journal of Probability. 14: 780-804. DOI: 10.1214/Ejp.V14-638  0.339
2009 Woodard DB, Schmidler SC, Huber M. Conditions for rapid mixing of parallel and simulated tempering on multimodal distributions Annals of Applied Probability. 19: 617-640. DOI: 10.1214/08-Aap555  0.319
2008 Cooke B, Schmidler SC. Preserving the Boltzmann ensemble in replica-exchange molecular dynamics. The Journal of Chemical Physics. 129: 164112. PMID 19045252 DOI: 10.1063/1.2989802  0.339
2008 Cooke B, Schmidler SC. Statistical prediction and molecular dynamics simulation. Biophysical Journal. 95: 4497-511. PMID 18676654 DOI: 10.1529/Biophysj.108.131623  0.36
2008 Valiaev A, Lim DW, Schmidler S, Clark RL, Chilkoti A, Zauscher S. Hydration and conformational mechanics of single, end-tethered elastin-like polypeptides. Journal of the American Chemical Society. 130: 10939-46. PMID 18646848 DOI: 10.1021/Ja800502H  0.344
2007 Schmidler SC, Lucas JE, Oas TG. Statistical estimation of statistical mechanical models: helix-coil theory and peptide helicity prediction. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 1287-310. PMID 18047425 DOI: 10.1089/Cmb.2007.0008  0.422
2005 Valiaev A, Dong WL, Chilkoti A, Schmidler S, Zauscher S. Polypeptide-solvent interactions measured by single molecule force spectroscopy Materials Research Society Symposium Proceedings. 898: 92-97. DOI: 10.1557/Proc-0898-L06-06-Nn04-06  0.336
2000 Schmidler SC, Liu JS, Brutlag DL. Bayesian segmentation of protein secondary structure. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 233-48. PMID 10890399 DOI: 10.1089/10665270050081496  0.56
1998 Wu TD, Schmidler SC, Hastie T, Brutlag DL. Regression analysis of multiple protein structures. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 585-95. PMID 9773352 DOI: 10.1089/Cmb.1998.5.585  0.561
1998 Wu TD, Schmidler SC, Hastie T, Brutlag DL. Modeling and superposition of multiple protein structures using affine transformations: analysis of the globins. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 509-20. PMID 9697208  0.534
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