Year |
Citation |
Score |
2017 |
Soheilypour M, Peyro M, Shams H, Mofrad M. Exploring the Interaction between MLP1 and NAB2 for mRNA Quality Control Purposes Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.2410 |
0.353 |
|
2016 |
Jahed Z, Shams H, Mofrad M. Molecular Mechanisms of Mechanotransduction through LINC Complexes Biophysical Journal. 110: 24a. DOI: 10.1016/J.Bpj.2015.11.191 |
0.365 |
|
2016 |
Soheilypour M, Mofrad M. Agent-Based Modeling of Biological Pathways - A Case-Study on mRNA Export and Quality Control Mechanism Biophysical Journal. 110: 1-9. DOI: 10.1016/J.Bpj.2015.11.1051 |
0.33 |
|
2015 |
Heidari M, Mehrbod M, Ejtehadi MR, Mofrad MR. Cooperation within von Willebrand factors enhances adsorption mechanism. Journal of the Royal Society, Interface / the Royal Society. 12: 20150334. PMID 26179989 DOI: 10.1098/Rsif.2015.0334 |
0.685 |
|
2014 |
Azimi M, Bulat E, Weis K, Mofrad MR. An agent-based model for mRNA export through the nuclear pore complex. Molecular Biology of the Cell. 25: 3643-53. PMID 25253717 DOI: 10.1091/Mbc.E14-06-1065 |
0.48 |
|
2014 |
Rui X, Mehrbod M, Van Agthoven JF, Anand S, Xiong JP, Mofrad MR, Arnaout MA. The α-subunit regulates stability of the metal ion at the ligand-associated metal ion-binding site in β3 integrins. The Journal of Biological Chemistry. 289: 23256-63. PMID 24975416 DOI: 10.1074/Jbc.M114.581470 |
0.681 |
|
2014 |
Jahed Z, Shams H, Mehrbod M, Mofrad MR. Mechanotransduction pathways linking the extracellular matrix to the nucleus. International Review of Cell and Molecular Biology. 310: 171-220. PMID 24725427 DOI: 10.1016/B978-0-12-800180-6.00005-0 |
0.725 |
|
2014 |
Mahalingam B, Van Agthoven JF, Xiong JP, Alonso JL, Adair BD, Rui X, Anand S, Mehrbod M, Mofrad MR, Burger C, Goodman SL, Arnaout MA. Atomic basis for the species-specific inhibition of αV integrins by monoclonal antibody 17E6 is revealed by the crystal structure of αVβ3 ectodomain-17E6 Fab complex. The Journal of Biological Chemistry. 289: 13801-9. PMID 24692540 DOI: 10.1074/Jbc.M113.546929 |
0.691 |
|
2014 |
Mehrbod M, Trisno S, Mofrad MR. How Talin Head Domain and Soluble Ligand Contribute to Integrin αIIbβ3 Activation Biophysical Journal. 106: 238a-239a. DOI: 10.1016/J.Bpj.2013.11.1397 |
0.715 |
|
2013 |
Azimi M, Mofrad MR. Higher nucleoporin-Importinβ affinity at the nuclear basket increases nucleocytoplasmic import. Plos One. 8: e81741. PMID 24282617 DOI: 10.1371/journal.pone.0081741 |
0.504 |
|
2013 |
Mehrbod M, Trisno S, Mofrad MR. On the activation of integrin αIIbβ3: outside-in and inside-out pathways. Biophysical Journal. 105: 1304-15. PMID 24047981 DOI: 10.1016/J.Bpj.2013.07.055 |
0.712 |
|
2013 |
Mehrbod M, Mofrad MR. Localized lipid packing of transmembrane domains impedes integrin clustering. Plos Computational Biology. 9: e1002948. PMID 23516344 DOI: 10.1371/Journal.Pcbi.1002948 |
0.714 |
|
2012 |
Yoon SH, Kim YK, Han ED, Seo YH, Kim BH, Mofrad MR. Passive control of cell locomotion using micropatterns: the effect of micropattern geometry on the migratory behavior of adherent cells. Lab On a Chip. 12: 2391-402. PMID 22534829 DOI: 10.1039/C2Lc40084G |
0.48 |
|
2012 |
Yoon SH, Kim YK, Mofrad MRK. Mechanobiological Approaches for the Control of Cell Motility Microfluidic Cell Culture Systems. 105-136. DOI: 10.1016/B978-1-4377-3459-1.00005-3 |
0.444 |
|
2011 |
Mehrbod M, Mofrad MR. On the significance of microtubule flexural behavior in cytoskeletal mechanics. Plos One. 6: e25627. PMID 21998675 DOI: 10.1371/Journal.Pone.0025627 |
0.705 |
|
2011 |
Azimi M, Jamali Y, Mofrad MR. Accounting for diffusion in agent based models of reaction-diffusion systems with application to cytoskeletal diffusion. Plos One. 6: e25306. PMID 21966493 DOI: 10.1371/journal.pone.0025306 |
0.489 |
|
2011 |
Yoon SH, Chang J, Lin L, Mofrad MR. A biological breadboard platform for cell adhesion and detachment studies. Lab On a Chip. 11: 3555-62. PMID 21874200 DOI: 10.1039/C1Lc20369J |
0.509 |
|
2011 |
Yoon SH, Mofrad MR. Cell adhesion and detachment on gold surfaces modified with a thiol-functionalized RGD peptide. Biomaterials. 32: 7286-96. PMID 21813174 DOI: 10.1016/J.Biomaterials.2011.05.077 |
0.506 |
|
2011 |
Jamali T, Jamali Y, Mehrbod M, Mofrad MR. Nuclear pore complex: biochemistry and biophysics of nucleocytoplasmic transport in health and disease. International Review of Cell and Molecular Biology. 287: 233-86. PMID 21414590 DOI: 10.1016/B978-0-12-386043-9.00006-2 |
0.698 |
|
2011 |
Mehrbod M, Mofrad MRK. On the mechanics of microtubule filaments Asme 2011 Summer Bioengineering Conference, Sbc 2011. 413-414. DOI: 10.1115/SBC2011-53896 |
0.689 |
|
2011 |
Chang J, Yoon SH, Mofrad MRK, Lin L. MEMS-based dynamic cell-to-cell culture platforms using electrochemical surface modifications Journal of Micromechanics and Microengineering. 21. DOI: 10.1088/0960-1317/21/5/054028 |
0.467 |
|
2011 |
Yoon SH, Lee C, Mofrad MRK. Viscoelastic characterization of the retracting cytoskeleton using subcellular detachment Applied Physics Letters. 98. DOI: 10.1063/1.3556557 |
0.504 |
|
2010 |
Jamali Y, Azimi M, Mofrad MR. A sub-cellular viscoelastic model for cell population mechanics. Plos One. 5. PMID 20856895 DOI: 10.1371/Journal.Pone.0012097 |
0.558 |
|
2010 |
Azimi M, Mofrad MRK. Use of a social networking recommendation engine in science and engineering education for accessible discovery, organization and collaboration of research knowledge Asme 2010 Summer Bioengineering Conference, Sbc 2010. 423-424. DOI: 10.1115/SBC2010-19596 |
0.423 |
|
2010 |
Chang J, Yoon SH, Mofrad MRK, Lin L. MEMS-based biological platform for dynamic cell-to-cell interaction characterization Proceedings of the Ieee International Conference On Micro Electro Mechanical Systems (Mems). 92-95. DOI: 10.1109/MEMSYS.2010.5442559 |
0.475 |
|
2010 |
Yoon SH, Reyes-Ortiz V, Kim KH, Seo YH, Mofrad MRK. Analysis of circular PDMS microballoons with ultralarge deflection for MEMS design Journal of Microelectromechanical Systems. 19: 854-864. DOI: 10.1109/Jmems.2010.2049984 |
0.456 |
|
2009 |
Yoon SH, Reyes-Ortiz V, Mofrad MRK. MEMS-based microballoons achieving multidirectional large-strain for cell mechanics studies Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 1163-1164. DOI: 10.1115/SBC2009-206853 |
0.441 |
|
2009 |
Yoon SH, Chang J, Reyes-Ortiz V, Lin L, Mofrad MRK. Addressable cell patterning and release using micro cell control platform: Biological breadboard Proceedings of Conference, Microtas 2009 - the 13th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1886-1888. |
0.472 |
|
Low-probability matches (unlikely to be authored by this person) |
2020 |
Behrouzi K, Jahed Z, Mofrad M. Viscoelastic Mechanical Models of the LINC Complex Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.2258 |
0.297 |
|
2020 |
Haydari Z, Shams H, Jahed Z, Mofrad MRK. Kindlin Assists Talin to Promote Integrin Activation. Biophysical Journal. PMID 32191864 DOI: 10.1016/j.bpj.2020.02.023 |
0.297 |
|
2020 |
Haydari Z, Shams H, Jahed Z, Mofrad M. Kindlin Cooperates with Talin for Integrin Activation, a Molecular Dynamics Approach Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.2780 |
0.288 |
|
2006 |
Kamm RD, Mofrad MRK. Introduction, with the biological basis for cell mechanics Cytoskeletal Mechanics: Models and Measurements. 1-17. DOI: 10.1017/CBO9780511607318.002 |
0.286 |
|
2017 |
Garakani K, Shams H, Mofrad MRK. Mechanosensitive Conformation of Vinculin Regulates Its Binding to MAPK1. Biophysical Journal. 112: 1885-1893. PMID 28494959 DOI: 10.1016/j.bpj.2017.03.039 |
0.283 |
|
2020 |
Peyro M, Mofrad M. Specific Sequence Features Regulate the Transient Binding between FG Nucleoporins and Cargo Complexes Biophysical Journal. 118: 342a. DOI: 10.1016/J.Bpj.2019.11.1905 |
0.28 |
|
2019 |
Soheilypour M, Peyro M, Shams H, Rider S, Kaazempur-Mofrad AR, Mofrad M. Molecular Mechanisms of the Interaction between the RNA-Binding Protein Nab2 and the Nuclear Basket Protein Mlp1 in mRNA Quality Control Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.1121 |
0.279 |
|
2019 |
Jahed Z, Haydari Z, Rathish A, Mofrad MRK. Kindlin Is Mechanosensitive: Force-Induced Conformational Switch Mediates Cross-Talk among Integrins. Biophysical Journal. PMID 30819565 DOI: 10.1016/j.bpj.2019.01.038 |
0.27 |
|
2018 |
Jahed Z, Fadavi D, Vu UT, Asgari E, Luxton GWG, Mofrad MRK. Molecular Insights into the Mechanisms of SUN1 Oligomerization in the Nuclear Envelope. Biophysical Journal. 114: 1190-1203. PMID 29539404 DOI: 10.1016/j.bpj.2018.01.015 |
0.269 |
|
2014 |
Golji J, Mofrad MR. The talin dimer structure orientation is mechanically regulated. Biophysical Journal. 107: 1802-9. PMID 25418161 DOI: 10.1016/j.bpj.2014.08.038 |
0.269 |
|
2008 |
Kolahi KS, Mofrad MR. Molecular mechanics of filamin's rod domain. Biophysical Journal. 94: 1075-83. PMID 17921200 DOI: 10.1529/biophysj.107.118802 |
0.267 |
|
2015 |
Truong T, Shams H, Mofrad MR. Mechanisms of integrin and filamin binding and their interplay with talin during early focal adhesion formation. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 1285-96. PMID 26156744 DOI: 10.1039/c5ib00133a |
0.267 |
|
2017 |
Shams H, Hoffman BD, Mofrad M. The ?stressful? life of adhesion molecules: On the molecular mechanosensitivity of adhesomes. Journal of Biomechanical Engineering. PMID 29272321 DOI: 10.1115/1.4038812 |
0.265 |
|
2013 |
Lee SE, Kamm RD, Mofrad MRK. A molecular perspective on mechanotransduction in focal adhesions Cellular Mechanotransduction: Diverse Perspectives From Molecules to Tissues. 250-268. DOI: 10.1017/CBO9781139195874.012 |
0.265 |
|
2018 |
Jahed Z, Vu UT, Fadavi D, Ke H, Rathish A, Kim SCJ, Feng W, Mofrad MRK. A Molecular Model for LINC complex regulation: Activation of SUN2 for KASH binding. Molecular Biology of the Cell. mbcE18040266. PMID 29995584 DOI: 10.1091/mbc.E18-04-0266 |
0.259 |
|
2012 |
Shams H, Golji J, Mofrad MR. A molecular trajectory of α-actinin activation. Biophysical Journal. 103: 2050-9. PMID 23200039 DOI: 10.1016/j.bpj.2012.08.044 |
0.257 |
|
2011 |
Moussavi-Baygi R, Jamali Y, Karimi R, Mofrad MR. Brownian dynamics simulation of nucleocytoplasmic transport: a coarse-grained model for the functional state of the nuclear pore complex. Plos Computational Biology. 7: e1002049. PMID 21673865 DOI: 10.1371/journal.pcbi.1002049 |
0.251 |
|
2017 |
Madani A, Garakani K, Mofrad MRK. Molecular mechanics of Staphylococcus aureus adhesin, CNA, and the inhibition of bacterial adhesion by stretching collagen. Plos One. 12: e0179601. PMID 28665944 DOI: 10.1371/journal.pone.0179601 |
0.249 |
|
2023 |
Yerima G, Domkam N, Ornowski J, Jahed Z, Mofrad MRK. Force transmission and SUN-KASH higher-order assembly in the LINC complex models. Biophysical Journal. 122: 4582-4597. PMID 37924205 DOI: 10.1016/j.bpj.2023.11.001 |
0.249 |
|
2020 |
Ahamed FR, Jeffers B, Jahed Z, Mofrad M. Characterization of Kindlin-2 Variants' Molecular Behavior Under Applied Tension Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.2263 |
0.248 |
|
2012 |
Holt BD, Shams H, Horst TA, Basu S, Rape AD, Wang YL, Rohde GK, Mofrad MR, Islam MF, Dahl KN. Altered cell mechanics from the inside: dispersed single wall carbon nanotubes integrate with and restructure actin. Journal of Functional Biomaterials. 3: 398-417. PMID 24955540 DOI: 10.3390/Jfb3020398 |
0.246 |
|
2010 |
Golji J, Mofrad MR. A molecular dynamics investigation of vinculin activation. Biophysical Journal. 99: 1073-81. PMID 20712990 DOI: 10.1016/j.bpj.2010.05.024 |
0.245 |
|
2014 |
Modarres HP, Mofrad MRK. Filamin: A structural and functional biomolecule with important roles in cell biology, signaling and mechanics McB Molecular and Cellular Biomechanics. 11: 39-65. PMID 25330623 |
0.244 |
|
2018 |
Cain NE, Jahed Z, Schoenhofen A, Valdez VA, Elkin B, Hao H, Harris NJ, Herrera LA, Woolums BM, Mofrad MRK, Luxton GWG, Starr DA. Conserved SUN-KASH Interfaces Mediate LINC Complex-Dependent Nuclear Movement and Positioning. Current Biology : Cb. PMID 30245107 DOI: 10.1016/J.Cub.2018.08.001 |
0.235 |
|
2013 |
Golji J, Mofrad MR. The interaction of vinculin with actin. Plos Computational Biology. 9: e1002995. PMID 23633939 DOI: 10.1371/journal.pcbi.1002995 |
0.234 |
|
2013 |
Wolf CB, Mofrad MRK. Mechanotransduction: Role of nuclear pore mechanics and nucleocytoplasmic transport Cellular Mechanotransduction: Diverse Perspectives From Molecules to Tissues. 417-437. DOI: 10.1017/CBO9781139195874.019 |
0.233 |
|
2018 |
Moussavi-Baygi R, Mofrad M. The Nature's Superviscous Nano-channel: Insight from Big Data-Driven Biophysical Modeling Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.3031 |
0.233 |
|
2014 |
Shams H, Holt BD, Mahboobi SH, Jahed Z, Islam MF, Dahl KN, Mofrad MR. Actin reorganization through dynamic interactions with single-wall carbon nanotubes. Acs Nano. 8: 188-97. PMID 24351114 DOI: 10.1021/Nn402865E |
0.233 |
|
2015 |
Jahed Z, Shams H, Mofrad MR. A Disulfide Bond Is Required for the Transmission of Forces through SUN-KASH Complexes. Biophysical Journal. 109: 501-9. PMID 26244732 DOI: 10.1016/j.bpj.2015.06.057 |
0.23 |
|
2016 |
Shams H, Golji J, Garakani K, Mofrad MR. Dynamic Regulation of α-Actinin's Calponin Homology Domains on F-Actin. Biophysical Journal. 110: 1444-55. PMID 27028653 DOI: 10.1016/j.bpj.2016.02.024 |
0.228 |
|
2021 |
Jahed Z, Domkam N, Ornowski J, Yerima G, Mofrad MRK. Molecular models of LINC complex assembly at the nuclear envelope. Journal of Cell Science. 134. PMID 34152389 DOI: 10.1242/jcs.258194 |
0.228 |
|
2015 |
Peyro M, Soheilypour M, Ghavami A, Mofrad MR. Nucleoporin's Like Charge Regions Are Major Regulators of FG Coverage and Dynamics Inside the Nuclear Pore Complex. Plos One. 10: e0143745. PMID 26658558 DOI: 10.1371/journal.pone.0143745 |
0.228 |
|
2019 |
Nakao N, Maki K, Mofrad MRK, Adachi T. Talin is required to increase stiffness of focal molecular complex in its early formation process. Biochemical and Biophysical Research Communications. PMID 31451222 DOI: 10.1016/j.bbrc.2019.08.091 |
0.228 |
|
2016 |
Soheilypour M, Peyro M, Jahed Z, Mofrad MRK. On the Nuclear Pore Complex and Its Roles in Nucleo-Cytoskeletal Coupling and Mechanobiology Cellular and Molecular Bioengineering. 1-10. DOI: 10.1007/s12195-016-0443-x |
0.227 |
|
2008 |
Wolf C, Mofrad MR. On the octagonal structure of the nuclear pore complex: insights from coarse-grained models. Biophysical Journal. 95: 2073-85. PMID 18487299 DOI: 10.1529/biophysj.108.130336 |
0.221 |
|
2019 |
Peyro M, Mofrad M. The Amino Acid Sequence Features of the FG Nucleoporins Affect the Movement of Cargo Complex Inside the NPC Biophysical Journal. 116: 202a. DOI: 10.1016/J.Bpj.2018.11.1118 |
0.22 |
|
2008 |
Lee SE, Chunsrivirot S, Kamm RD, Mofrad MR. Molecular dynamics study of talin-vinculin binding. Biophysical Journal. 95: 2027-36. PMID 18408041 DOI: 10.1529/Biophysj.107.124487 |
0.218 |
|
2018 |
Haydari Z, Shams H, Mofrad M. STIM1-Induced Conformational Transition of ORAI-1 Leads to Channel Activation Biophysical Journal. 114: 405a. DOI: 10.1016/J.Bpj.2017.11.2247 |
0.218 |
|
2014 |
Zhao CL, Mahboobi SH, Moussavi-Baygi R, Mofrad MR. The interaction of CRM1 and the nuclear pore protein Tpr. Plos One. 9: e93709. PMID 24722547 DOI: 10.1371/journal.pone.0093709 |
0.218 |
|
2006 |
Mofrad MRK, Kamm RD. Cytoskeletal mechanics: Models and measurements Cytoskeletal Mechanics: Models and Measurements. 1-244. DOI: 10.1017/CBO9780511607318 |
0.214 |
|
2015 |
Soheilypour M, Peyro M, Peter SJ, Mofrad MR. Buckling behavior of individual and bundled microtubules. Biophysical Journal. 108: 1718-26. PMID 25863063 DOI: 10.1016/j.bpj.2015.01.030 |
0.213 |
|
2017 |
Shams H, Mofrad MRK. α-Actinin Induces a Kink in the Transmembrane Domain of β3-Integrin and Impairs Activation via Talin. Biophysical Journal. 113: 948-956. PMID 28834730 DOI: 10.1016/j.bpj.2017.06.064 |
0.213 |
|
2009 |
Kolahi KS, White PF, Shreter DM, Classen AK, Bilder D, Mofrad MR. Quantitative analysis of epithelial morphogenesis in Drosophila oogenesis: New insights based on morphometric analysis and mechanical modeling. Developmental Biology. 331: 129-39. PMID 19409378 DOI: 10.1016/j.ydbio.2009.04.028 |
0.212 |
|
2007 |
Lee SE, Kamm RD, Mofrad MR. Force-induced activation of talin and its possible role in focal adhesion mechanotransduction. Journal of Biomechanics. 40: 2096-106. PMID 17544431 DOI: 10.1016/J.Jbiomech.2007.04.006 |
0.21 |
|
2019 |
Jahed Z, Hao H, Thakkar V, Vu UT, Valdez VA, Rathish A, Tolentino C, Kim SCJ, Fadavi D, Starr DA, Mofrad MRK. Role of KASH domain lengths in the regulation of LINC complexes. Molecular Biology of the Cell. mbcE19020079. PMID 30995155 DOI: 10.1091/Mbc.E19-02-0079 |
0.21 |
|
2021 |
Lennon KM, Soheilypour M, Peyro M, Wakefield DL, Choo GE, Mofrad MRK, Jovanovic-Talisman T. Characterizing Binding Interactions That Are Essential for Selective Transport through the Nuclear Pore Complex. International Journal of Molecular Sciences. 22. PMID 34639238 DOI: 10.3390/ijms221910898 |
0.205 |
|
2016 |
Jahed Z, Soheilypour M, Peyro M, Mofrad MR. The LINC and NPC relationship - it's complicated! Journal of Cell Science. PMID 27530973 DOI: 10.1242/jcs.184184 |
0.205 |
|
2017 |
Shams H, Soheilypour M, Peyro M, Moussavi-Baygi R, Mofrad MRK. Looking "Under the Hood" of Cellular Mechanotransduction with Computational Tools: A Systems Biomechanics Approach across Multiple Scales. Acs Biomaterials Science & Engineering. 3: 2712-2726. PMID 33418698 DOI: 10.1021/acsbiomaterials.7b00117 |
0.205 |
|
2021 |
Karimi R, Reza Alam M, Mofrad MRK. Hydrodynamic interactions significantly alter the dynamics of actin networks and result in a length scale dependent loss modulus. Journal of Biomechanics. 120: 110352. PMID 33756413 DOI: 10.1016/j.jbiomech.2021.110352 |
0.204 |
|
2020 |
Cheng B, Wan W, Huang G, Li Y, Genin GM, Mofrad MRK, Lu TJ, Xu F, Lin M. Nanoscale integrin cluster dynamics controls cellular mechanosensing via FAKY397 phosphorylation. Science Advances. 6: eaax1909. PMID 32181337 DOI: 10.1126/sciadv.aax1909 |
0.203 |
|
2008 |
Mandadapu KK, Govindjee S, Mofrad MR. On the cytoskeleton and soft glassy rheology. Journal of Biomechanics. 41: 1467-78. PMID 18402964 DOI: 10.1016/J.Jbiomech.2008.02.014 |
0.203 |
|
2021 |
Peyro M, Dickson AM, Mofrad MRK. Nucleoporins' exclusive amino acid sequence features regulate their transient interaction with and selectivity of cargo complexes in the nuclear pore. Molecular Biology of the Cell. mbcE21040161. PMID 34473567 DOI: 10.1091/mbc.E21-04-0161 |
0.202 |
|
2022 |
Matsuda A, Mofrad MRK. On the nuclear pore complex and its emerging role in cellular mechanotransduction. Apl Bioengineering. 6: 011504. PMID 35308827 DOI: 10.1063/5.0080480 |
0.202 |
|
2016 |
Jahed Z, Zareian R, Chau YY, Seo BB, West M, Tsui TY, Wen W, Mofrad MR. Differential Collective and Single Cell Behaviors on Silicon Micropillar Arrays. Acs Applied Materials & Interfaces. PMID 27536959 DOI: 10.1021/Acsami.6B08668 |
0.201 |
|
2014 |
Abdul Rahim NA, Pelet S, Mofrad MR, So PT, Kamm RD. Quantifying intracellular protein binding thermodynamics during mechanotransduction based on FRET spectroscopy. Methods (San Diego, Calif.). 66: 208-21. PMID 24184188 DOI: 10.1016/J.Ymeth.2013.10.007 |
0.2 |
|
2009 |
Mofrad MRK. Rheology of the cytoskeleton Annual Review of Fluid Mechanics. 41: 433-453. DOI: 10.1146/annurev.fluid.010908.165236 |
0.198 |
|
2009 |
Chandran PL, Mofrad MR. Rods-on-string idealization captures semiflexible filament dynamics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 011906. PMID 19257068 DOI: 10.1103/PhysRevE.79.011906 |
0.195 |
|
2009 |
Wolf CB, Mofrad MRK. Mechanotransduction and its role in stem Cell Biology Trends in Stem Cell Biology and Technology. 389-403. DOI: 10.1007/978-1-60327-905-5_20 |
0.194 |
|
2013 |
Jamali Y, Jamali T, Mofrad MRK. An agent based model of integrin clustering: Exploring the role of ligand clustering, integrin homo-oligomerization, integrin-ligand affinity, membrane crowdedness and ligand mobility Journal of Computational Physics. 244: 264-278. DOI: 10.1016/j.jcp.2012.09.010 |
0.193 |
|
2024 |
Khavani M, Mehranfar A, Mofrad MRK. Antimicrobial peptide interactions with bacterial cell membranes. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 38263741 DOI: 10.1080/07391102.2024.2304683 |
0.193 |
|
2014 |
Jahed Z, Molladavoodi S, Seo BB, Gorbet M, Tsui TY, Mofrad MR. Cell responses to metallic nanostructure arrays with complex geometries. Biomaterials. 35: 9363-71. PMID 25123921 DOI: 10.1016/J.Biomaterials.2014.07.022 |
0.192 |
|
2009 |
Golji J, Collins R, Mofrad MR. Molecular mechanics of the alpha-actinin rod domain: bending, torsional, and extensional behavior. Plos Computational Biology. 5: e1000389. PMID 19436721 DOI: 10.1371/journal.pcbi.1000389 |
0.192 |
|
2010 |
Chandran PL, Mofrad MR. Averaged implicit hydrodynamic model of semiflexible filaments. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 031920. PMID 20365783 DOI: 10.1103/PhysRevE.81.031920 |
0.191 |
|
2009 |
Chen HS, Kolahi KS, Mofrad MR. Phosphorylation facilitates the integrin binding of filamin under force. Biophysical Journal. 97: 3095-104. PMID 20006946 DOI: 10.1016/j.bpj.2009.08.059 |
0.189 |
|
2010 |
Kolahi KS, Mofrad MR. Mechanotransduction: a major regulator of homeostasis and development. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 625-39. PMID 20890961 DOI: 10.1002/wsbm.79 |
0.188 |
|
2011 |
Golji J, Lam J, Mofrad MR. Vinculin activation is necessary for complete talin binding. Biophysical Journal. 100: 332-40. PMID 21244829 DOI: 10.1016/j.bpj.2010.11.024 |
0.186 |
|
2022 |
Shams H, Hollenbach JA, Matsunaga A, Mofrad MRK, Oksenberg JR, Didonna A. A short HLA-DRA isoform binds the HLA-DR2 heterodimer on the outer domain of the peptide-binding site. Archives of Biochemistry and Biophysics. 109156. PMID 35218721 DOI: 10.1016/j.abb.2022.109156 |
0.185 |
|
2021 |
Matsuda A, Mofrad MRK. Free energy calculations shed light on the nuclear pore complex's selective barrier nature. Biophysical Journal. PMID 34339633 DOI: 10.1016/j.bpj.2021.07.025 |
0.18 |
|
2013 |
Mofrad MRK, Kamm RD. Summary and outlook Cellular Mechanotransduction: Diverse Perspectives From Molecules to Tissues. 438-443. DOI: 10.1017/CBO9781139195874.020 |
0.179 |
|
2010 |
Bao G, Kamm RD, Thomas W, Hwang W, Fletcher DA, Grodzinsky AJ, Zhu C, Mofrad MR. Molecular Biomechanics: The Molecular Basis of How Forces Regulate Cellular Function. Molecular & Cellular Biomechanics : McB. 3: 91-105. PMID 20700472 DOI: 10.1007/S12195-010-0109-Z |
0.176 |
|
2011 |
Moussavi-Baygi R, Jamali Y, Karimi R, Mofrad MR. Biophysical coarse-grained modeling provides insights into transport through the nuclear pore complex. Biophysical Journal. 100: 1410-9. PMID 21402022 DOI: 10.1016/j.bpj.2011.01.061 |
0.175 |
|
2014 |
Shams H, Mofrad MR. Molecular Mechanisms Underlying the Inside-Out Signaling through Focal Adhesions Biophysical Journal. 106: 574a. DOI: 10.1016/j.bpj.2013.11.3183 |
0.174 |
|
2020 |
Didonna A, Damotte V, Shams H, Matsunaga A, Caillier SJ, Dandekar R, Misra MK, Mofrad MRK, Oksenberg JR, Hollenbach JA. A splice acceptor variant in HLA-DRA affects the conformation and cellular localization of the class II DR alpha-chain. Immunology. PMID 32986852 DOI: 10.1111/imm.13273 |
0.171 |
|
2010 |
Mofrad MRK. Molecular mechanosensors and focal adhesion mechanotransduction Asme 2010 Summer Bioengineering Conference, Sbc 2010. 365-366. DOI: 10.1115/SBC2010-19707 |
0.17 |
|
2017 |
Jahed Z, Shahsavan H, Verma MS, Rogowski JL, Seo BB, Zhao B, Tsui TY, Gu FX, Mofrad MR. Bacterial Networks on Hydrophobic Micropillars. Acs Nano. PMID 28045495 DOI: 10.1021/Acsnano.6B06985 |
0.17 |
|
2007 |
Vaziri A, Mofrad MR. Mechanics and deformation of the nucleus in micropipette aspiration experiment. Journal of Biomechanics. 40: 2053-62. PMID 17112531 DOI: 10.1016/J.Jbiomech.2006.09.023 |
0.168 |
|
2019 |
Van Agthoven JF, Shams H, Cochran FV, Alonso JL, Kintzing JR, Garakani K, Adair BD, Xiong JP, Mofrad MRK, Cochran JR, Arnaout MA. Structural Basis of the Differential Binding of Engineered Knottins to Integrins αVβ3 and α5β1. Structure (London, England : 1993). PMID 31353240 DOI: 10.1016/J.Str.2019.06.011 |
0.168 |
|
2023 |
Khavani M, Mehranfar A, Mofrad MRK. On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study. Journal of Chemical Information and Modeling. PMID 36735895 DOI: 10.1021/acs.jcim.2c01378 |
0.167 |
|
2019 |
Jahed Z, Mofrad MR. The nucleus feels the force, LINCed in or not! Current Opinion in Cell Biology. 58: 114-119. PMID 31002996 DOI: 10.1016/j.ceb.2019.02.012 |
0.165 |
|
2010 |
Golji J, Mofrad MRK. Focal adhesion mechanotransduction: Molecular events leading to vinculin activation Asme 2010 Summer Bioengineering Conference, Sbc 2010. 437-438. DOI: 10.1115/SBC2010-19711 |
0.162 |
|
2016 |
Boyer PD, Shams H, Baker SL, Mofrad MRK, Islam MF, Dahl KN. Enhanced intracellular delivery of small molecules and drugs via non-covalent ternary dispersions of single-wall carbon nanotubes. Journal of Materials Chemistry. B. 4: 1324-1330. PMID 32262987 DOI: 10.1039/C5Tb02016F |
0.16 |
|
2011 |
Mofrad MR. Exploring Cellular Mechanotransduction at the Focal Adhesions, One Molecule at a Time Biophysical Journal. 100: 447a. DOI: 10.1016/j.bpj.2010.12.2636 |
0.159 |
|
2021 |
Tsukamoto S, Asakawa T, Kimura S, Takesue N, Mofrad MRK, Sakamoto N. Intranuclear strain in living cells subjected to substrate stretching: A combined experimental and computational study. Journal of Biomechanics. 119: 110292. PMID 33667883 DOI: 10.1016/j.jbiomech.2021.110292 |
0.156 |
|
2023 |
Valiei A, Aminian-Dehkordi J, Mofrad MRK. Gut-on-a-chip models for dissecting the gut microbiology and physiology. Apl Bioengineering. 7: 011502. PMID 36875738 DOI: 10.1063/5.0126541 |
0.155 |
|
2014 |
Jahed Z, Lin P, Seo BB, Verma MS, Gu FX, Tsui TY, Mofrad MR. Responses of Staphylococcus aureus bacterial cells to nanocrystalline nickel nanostructures. Biomaterials. 35: 4249-54. PMID 24576805 DOI: 10.1016/j.biomaterials.2014.01.080 |
0.154 |
|
2016 |
Pezeshki-Modaress M, Mirzadeh H, Zandi M, Rajabi-Zeleti S, Sodeifi N, Aghdami N, Mofrad MR. Gelatin/Chondroitin Sulfate Nanofibrous Scaffolds for Stimulation of Wound Healing: In-Vitro and In-Vivo Study. Journal of Biomedical Materials Research. Part A. PMID 27588562 DOI: 10.1002/jbm.a.35890 |
0.153 |
|
2023 |
Khavani M, Mehranfar A, Mofrad MRK. On the potentials of sialic acid derivatives as inhibitors for the mumps virus: A molecular dynamics and quantum chemistry investigation. Virus Research. 326: 199050. PMID 36682462 DOI: 10.1016/j.virusres.2023.199050 |
0.151 |
|
2005 |
Vaziri A, Lee H, Kamm RD, Mofrad MRK. A viscoelastic model for nucleus deformation and mechanics in atomic force microscopy indentation Proceedings of the 2005 Summer Bioengineering Conference. 2005: 1108-1109. |
0.15 |
|
2009 |
Weinberg EJ, Mofrad MRK. Multiscale simulations of the healthy and calcific human aortic valve Proceedings of the Asme Summer Bioengineering Conference, Sbc2008. 133-134. |
0.149 |
|
2012 |
Golji J, Wendorff T, Mofrad MR. Phosphorylation primes vinculin for activation. Biophysical Journal. 102: 2022-30. PMID 22824265 DOI: 10.1016/j.bpj.2012.01.062 |
0.148 |
|
2007 |
Weinberg EJ, Mofrad MRK. Multiscale fluid-structure simulations of the aortic valve Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 245-246. |
0.146 |
|
2016 |
Shams H, Garakani K, Golji J, Mofrad MR. Molecular Mechanism of α-Actinin Binding to F-Actin: Effect of K255E Mutation Biophysical Journal. 110: 125a-126a. DOI: 10.1016/j.bpj.2015.11.723 |
0.146 |
|
2017 |
Shams H, Luxton G, Mofrad MR. Mechanical Response of Nesprin-2G to Cytoskeletal Forces Regulates Linc Complex-Dependent Mechanotransduction Biophysical Journal. 112: 337a. DOI: 10.1016/j.bpj.2016.11.1825 |
0.145 |
|
2022 |
Zamri MHB, Ujihara Y, Nakamura M, Mofrad MRK, Sugita S. Decoding the Effect of Hydrostatic Pressure on TRPV1 Lower-Gate Conformation by Molecular-Dynamics Simulation. International Journal of Molecular Sciences. 23. PMID 35806371 DOI: 10.3390/ijms23137366 |
0.143 |
|
2010 |
Leach JR, Mofrad MRK, Saloner D. Computational models of vascular mechanics Computational Modeling in Biomechanics. 99-170. DOI: 10.1007/978-90-481-3575-2_4 |
0.141 |
|
2015 |
Shamloo A, Heibatollahi M, Mofrad MR. Directional migration and differentiation of neural stem cells within three-dimensional microenvironments. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 335-44. PMID 25633746 DOI: 10.1039/C4Ib00144C |
0.141 |
|
2022 |
McKinley JP, Montes AR, Wang MN, Kamath AR, Jimenez G, Lim J, Marathe SA, Mofrad MRK, O'Connell GD. Design of a flexing organ-chip to model loading of the intervertebral disc. Biomicrofluidics. 16: 054111. PMID 36330201 DOI: 10.1063/5.0103141 |
0.141 |
|
2018 |
Soheilypour M, Mofrad MRK. Agent-Based Modeling in Molecular Systems Biology. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1800020. PMID 29882969 DOI: 10.1002/bies.201800020 |
0.139 |
|
2015 |
Seo BB, Chen PZ, Jahed Z, Mofrad MRK, Gu FX, Tsui TY. Trapping polystyrene and latex nanospheres inside hollow nanostructures using Staphylococcus aureus cells Journal of Experimental Nanoscience. DOI: 10.1080/17458080.2015.1059505 |
0.139 |
|
2016 |
Shams H, Mofrad MR. Distinct Roles of α-Actinin in Regulating Talin-Induced Activation of αIIbβ3 versus α5β1 Integrins Biophysical Journal. 110: 593a. DOI: 10.1016/j.bpj.2015.11.3164 |
0.139 |
|
2022 |
Shams H, Matsunaga A, Ma Q, Mofrad MRK, Didonna A. Methylation at a conserved lysine residue modulates tau assembly and cellular functions. Molecular and Cellular Neurosciences. 103707. PMID 35231567 DOI: 10.1016/j.mcn.2022.103707 |
0.136 |
|
2017 |
Seo BB, Jahed Z, Coggan JA, Chau YY, Rogowski JL, Gu FX, Wen W, Mofrad MRK, Tsui TY. Mechanical Contact Characteristics of PC3 Human Prostate Cancer Cells on Complex-Shaped Silicon Micropillars. Materials (Basel, Switzerland). 10. PMID 28767082 DOI: 10.3390/Ma10080892 |
0.136 |
|
2009 |
Zaman MH, Mofrad MRK, Bao G, Kamm RD. Cellular and Molecular Bioengineering: Editorial Cellular and Molecular Bioengineering. 2: 1. DOI: 10.1007/s12195-009-0054-x |
0.133 |
|
2023 |
Mehranfar A, Khavani M, Mofrad MRK. Adsorption Process of Various Antimicrobial Peptides on Different Surfaces of Cellulose. Acs Applied Bio Materials. 6: 1041-1053. PMID 36935640 DOI: 10.1021/acsabm.2c00905 |
0.133 |
|
2018 |
Soheilypour M, Mofrad MRK. Quality control of mRNAs at the entry of the nuclear pore: Cooperation in a complex molecular system. Nucleus (Austin, Tex.). 9: 202-211. PMID 29431587 DOI: 10.1080/19491034.2018.1439304 |
0.132 |
|
2007 |
Weinberg EJ, Mofrad MRK. Three-dimensional, multiscale simulations of the human aortic valve Cardiovascular Engineering. 7: 140-155. PMID 18026835 DOI: 10.1007/s10558-007-9038-4 |
0.131 |
|
2021 |
Peyro M, Soheilypour M, Nibber VS, Dickson AM, Mofrad MRK. FG Nucleoporins feature unique amino acid sequence patterns that distinguish them from other IDPs. Biophysical Journal. PMID 34237287 DOI: 10.1016/j.bpj.2021.06.031 |
0.129 |
|
2021 |
Peyro M, Soheilypour M, Nibber VS, Dickson AM, Mofrad MRK. FG Nucleoporins feature unique amino acid sequence patterns that distinguish them from other IDPs. Biophysical Journal. PMID 34237287 DOI: 10.1016/j.bpj.2021.06.031 |
0.129 |
|
2010 |
Leach JR, Rayz VL, Mofrad MR, Saloner D. An efficient two-stage approach for image-based FSI analysis of atherosclerotic arteries. Biomechanics and Modeling in Mechanobiology. 9: 213-23. PMID 19756798 DOI: 10.1007/S10237-009-0172-3 |
0.129 |
|
2015 |
Mahboobi SH, Javanpour AA, Mofrad MR. The interaction of RNA helicase DDX3 with HIV-1 Rev-CRM1-RanGTP complex during the HIV replication cycle. Plos One. 10: e0112969. PMID 25723178 DOI: 10.1371/journal.pone.0112969 |
0.127 |
|
2009 |
Chandran PL, Wolf CB, Mofrad MRK. Band-like stress fiber propagation in a continuum and implications for myosin contractile stresses Cellular and Molecular Bioengineering. 2: 13-27. DOI: 10.1007/s12195-009-0044-z |
0.127 |
|
2021 |
Asadzadeh H, Moosavi A, Alexandrakis G, Mofrad MRK. Atomic Scale Interactions between RNA and DNA Aptamers with the TNF- Protein. Biomed Research International. 2021: 9926128. PMID 34327241 DOI: 10.1155/2021/9926128 |
0.127 |
|
2016 |
Haydari Z, Shams H, Mofrad MR. Molecular Mechanisms of STIM1-Mediated Orai-1 Channel Activation Biophysical Journal. 110: 265a. DOI: 10.1016/j.bpj.2015.11.1447 |
0.121 |
|
2024 |
Talebi S, Gai S, Sossin A, Zhu V, Tong E, Mofrad MRK. Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics. Annals of Biomedical Engineering. PMID 38402314 DOI: 10.1007/s10439-024-03471-7 |
0.12 |
|
2015 |
Lazarus C, Soheilypour M, Mofrad MR. Torsional behavior of axonal microtubule bundles. Biophysical Journal. 109: 231-9. PMID 26200859 DOI: 10.1016/j.bpj.2015.06.029 |
0.119 |
|
2022 |
Aminian-Dehkordi J, Valiei A, Mofrad MRK. Emerging computational paradigms to address the complex role of gut microbial metabolism in cardiovascular diseases. Frontiers in Cardiovascular Medicine. 9: 987104. PMID 36299869 DOI: 10.3389/fcvm.2022.987104 |
0.118 |
|
2021 |
Røise JJ, Han H, Li J, Kerr DL, Taing C, Behrouzi K, He M, Ruan E, Chan LY, Espinoza EM, Reinhard S, Thakker K, Kwon J, Mofrad MRK, Murthy N. Acid-Sensitive Surfactants Enhance the Delivery of Nucleic Acids. Molecular Pharmaceutics. PMID 34931518 DOI: 10.1021/acs.molpharmaceut.1c00579 |
0.116 |
|
2012 |
Peter SJ, Mofrad MR. Computational modeling of axonal microtubule bundles under tension. Biophysical Journal. 102: 749-57. PMID 22385845 DOI: 10.1016/j.bpj.2011.11.4024 |
0.115 |
|
2017 |
Arzani A, Mofrad MRK. A strain-based finite element model for calcification progression in aortic valves. Journal of Biomechanics. PMID 29100595 DOI: 10.1016/j.jbiomech.2017.10.014 |
0.115 |
|
2017 |
Bakhaty AA, Govindjee S, Mofrad MRK. Consistent trilayer biomechanical modeling of aortic valve leaflet tissue. Journal of Biomechanics. PMID 28830591 DOI: 10.1016/J.Jbiomech.2017.06.014 |
0.115 |
|
2013 |
Mofrad MRK, Kamm RD. Cellular mechanotransduction: Diverse perspectives from molecules to tissues Cellular Mechanotransduction: Diverse Perspectives From Molecules to Tissues. 1-481. DOI: 10.1017/CBO9781139195874 |
0.115 |
|
2016 |
Gu J, Chen PZ, Seo BB, Jardin JM, Verma MS, Jahed Z, Mofrad MRK, Gu FX, Tsui TY. Adhesion characteristics of Staphylococcus aureus bacterial cells on funnel-shaped palladium–cobalt alloy nanostructures Journal of Experimental Nanoscience. 11: 480-489. DOI: 10.1080/17458080.2015.1083126 |
0.114 |
|
2019 |
Didonna A, Cantó E, Shams H, Isobe N, Zhao C, Caillier SJ, Condello C, Yamate-Morgan H, Tiwari-Woodruff SK, Mofrad MRK, Hauser SL, Oksenberg JR. Sex-specific Tau methylation patterns and synaptic transcriptional alterations are associated with neural vulnerability during chronic neuroinflammation. Journal of Autoimmunity. PMID 31010726 DOI: 10.1016/J.Jaut.2019.04.003 |
0.112 |
|
2010 |
Croft LR, Mofrad MRK. Computational modeling of aortic heart valves Computational Modeling in Biomechanics. 221-252. DOI: 10.1007/978-90-481-3575-2_7 |
0.111 |
|
2017 |
Arzani A, Masters KS, Mofrad MRK. Multiscale Systems Biology Model of Calcific Aortic Valve Disease Progression. Acs Biomaterials Science & Engineering. 3: 2922-2933. PMID 33418713 DOI: 10.1021/acsbiomaterials.7b00174 |
0.11 |
|
2009 |
Chandran PL, Mofrad MRK. Hydrodynamics and semi-flexible filament behavior Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 103-104. DOI: 10.1115/SBC2009-206748 |
0.109 |
|
2019 |
Asgari E, McHardy AC, Mofrad MRK. Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX). Scientific Reports. 9: 3577. PMID 30837494 DOI: 10.1038/s41598-019-38746-w |
0.108 |
|
2023 |
Sanati A, Esmaeili Y, Khavani M, Bidram E, Rahimi A, Dabiri A, Rafienia M, Arbab Jolfaie N, Mofrad MRK, Haghjooy Javanmard S, Shariati L, Zarrabi A. Smartphone-assisted lab-in-a-tube device using gold nanocluster-based aptasensor for detection of MUC1-overexpressed tumor cells. Analytica Chimica Acta. 1252: 341017. PMID 36935143 DOI: 10.1016/j.aca.2023.341017 |
0.107 |
|
2024 |
Talebi S, Tong E, Li A, Yamin G, Zaharchuk G, Mofrad MRK. Exploring the performance and explainability of fine-tuned BERT models for neuroradiology protocol assignment. Bmc Medical Informatics and Decision Making. 24: 40. PMID 38326769 DOI: 10.1186/s12911-024-02444-z |
0.103 |
|
2023 |
Khavani M, Mehranfar A, Mofrad MRK. On the interactions of peptides with gold nanoparticles: effects of sequence and size. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 37306472 DOI: 10.1080/07391102.2023.2220816 |
0.101 |
|
2021 |
Seyyedsalehi SF, Soleymani M, Rabiee HR, Mofrad MRK. PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks. Plos One. 16: e0244430. PMID 33630862 DOI: 10.1371/journal.pone.0244430 |
0.101 |
|
2022 |
Khavani M, Mehranfar A, Mofrad MRK. Effects of Ionic Liquids on the Stabilization Process of Gold Nanoparticles. The Journal of Physical Chemistry. B. 126: 9617-9631. PMID 36367820 DOI: 10.1021/acs.jpcb.2c05878 |
0.094 |
|
2023 |
Bajaj T, Wehri E, Suryawanshi RK, King E, Pardeshi KS, Behrouzi K, Khodabakhshi Z, Schulze-Gahmen U, Kumar GR, Mofrad MRK, Nomura DK, Ott M, Schaletzky J, Murthy N. Mercapto-pyrimidines are reversible covalent inhibitors of the papain-like protease (PLpro) and inhibit SARS-CoV-2 (SCoV-2) replication. Rsc Advances. 13: 17667-17677. PMID 37312993 DOI: 10.1039/d3ra01915b |
0.094 |
|
2021 |
Nourani E, Asgari E, Mc Hardy A, Mofrad M. TripletProt: Deep Representation Learning of Proteins based on Siamese Networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34460382 DOI: 10.1109/TCBB.2021.3108718 |
0.092 |
|
2015 |
Bakhaty AA, Mofrad MR. Coupled Simulation of Heart Valves: Applications to Clinical Practice. Annals of Biomedical Engineering. 43: 1626-39. PMID 26101029 DOI: 10.1007/s10439-015-1348-x |
0.091 |
|
2020 |
Anderson KM, Augusto DG, Dandekar R, Shams H, Zhao C, Yusufali T, Montero-Martín G, Marin WM, Nemat-Gorgani N, Creary LE, Caillier S, Mofrad MRK, Parham P, Fernández-Viña M, Oksenberg JR, et al. Killer Cell Immunoglobulin-like Receptor Variants Are Associated with Protection from Symptoms Associated with More Severe Course in Parkinson Disease. Journal of Immunology (Baltimore, Md. : 1950). PMID 32709660 DOI: 10.4049/Jimmunol.2000144 |
0.091 |
|
2007 |
Coghlan KM, McGarry P, Mofrad MRK, McHugh PE. Development of a discrete finite element cell model Proceedings of the Asme Summer Bioengineering Conference 2007, Sbc 2007. 437-438. |
0.089 |
|
2014 |
Hasan A, Ragaert K, Swieszkowski W, Selimović S, Paul A, Camci-Unal G, Mofrad MR, Khademhosseini A. Biomechanical properties of native and tissue engineered heart valve constructs. Journal of Biomechanics. 47: 1949-63. PMID 24290137 DOI: 10.1016/J.Jbiomech.2013.09.023 |
0.088 |
|
2005 |
Khalil AS, Chan RC, Chau AH, Bouma BE, Mofrad MR. Tissue elasticity estimation with optical coherence elastography: toward mechanical characterization of in vivo soft tissue. Annals of Biomedical Engineering. 33: 1631-9. PMID 16341928 DOI: 10.1007/S10439-005-6766-3 |
0.088 |
|
2023 |
Han H, Gracia AV, Røise JJ, Boike L, Leon K, Schulze-Gahmen U, Stentzel MR, Bajaj T, Chen D, Li IC, He M, Behrouzi K, Khodabakhshi Z, Nomura DK, Mofrad MRK, et al. A covalent inhibitor targeting the papain-like protease from SARS-CoV-2 inhibits viral replication. Rsc Advances. 13: 10636-10641. PMID 37025664 DOI: 10.1039/d3ra00426k |
0.088 |
|
2016 |
Hasan A, Saliba J, Pezeshgi Modarres H, Bakhaty A, Nasajpour A, Mofrad MR, Sanati-Nezhad A. Micro and nanotechnologies in heart valve tissue engineering. Biomaterials. 103: 278-292. PMID 27414719 DOI: 10.1016/J.Biomaterials.2016.07.001 |
0.087 |
|
2010 |
Leach JR, Rayz VL, Soares B, Wintermark M, Mofrad MR, Saloner D. Carotid atheroma rupture observed in vivo and FSI-predicted stress distribution based on pre-rupture imaging. Annals of Biomedical Engineering. 38: 2748-65. PMID 20232151 DOI: 10.1007/S10439-010-0004-8 |
0.086 |
|
2010 |
Weinberg EJ, Shahmirzadi D, Mofrad MR. On the multiscale modeling of heart valve biomechanics in health and disease. Biomechanics and Modeling in Mechanobiology. 9: 373-87. PMID 20066464 DOI: 10.1007/s10237-009-0181-2 |
0.085 |
|
2009 |
Weinberg EJ, Schoen FJ, Mofrad MR. A computational model of aging and calcification in the aortic heart valve. Plos One. 4: e5960. PMID 19536285 DOI: 10.1371/journal.pone.0005960 |
0.081 |
|
2015 |
Asgari E, Mofrad MR. Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics. Plos One. 10: e0141287. PMID 26555596 DOI: 10.1371/journal.pone.0141287 |
0.08 |
|
2016 |
Boyer PD, Shams H, Baker SL, Mofrad MRK, Islam MF, Dahl KN. Enhanced intracellular delivery of small molecules and drugs via non-covalent ternary dispersions of single-wall carbon nanotubes Journal of Materials Chemistry B. 4: 1324-1330. DOI: 10.1039/c5tb02016f |
0.074 |
|
2006 |
Karimi R, Chan R, Houser S, Bouma BE, Mofrad MRK. A novel framework for elastography and modulus estimation: Integration of tissue mechanics with imaging 2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 2006: 602-605. |
0.073 |
|
2018 |
Pezeshgi Modarres H, Mofrad MR, Sanati-Nezhad A. ProtDataTherm: A database for thermostability analysis and engineering of proteins. Plos One. 13: e0191222. PMID 29377907 DOI: 10.1371/journal.pone.0191222 |
0.072 |
|
2015 |
Kheradvar A, Groves EM, Falahatpisheh A, Mofrad MK, Hamed Alavi S, Tranquillo R, Dasi LP, Simmons CA, Jane Grande-Allen K, Goergen CJ, Baaijens F, Little SH, Canic S, Griffith B. Emerging Trends in Heart Valve Engineering: Part IV. Computational Modeling and Experimental Studies. Annals of Biomedical Engineering. 43: 2314-33. PMID 26224522 DOI: 10.1007/S10439-015-1394-4 |
0.072 |
|
2021 |
Bahai A, Asgari E, Mofrad MRK, Kloetgen A, McHardy AC. EpitopeVec: Linear Epitope Prediction Using Deep Protein Sequence Embeddings. Bioinformatics (Oxford, England). PMID 34180989 DOI: 10.1093/bioinformatics/btab467 |
0.071 |
|
2018 |
Shams H, Mofrad MR. Enhancing Enzymatic Activity for Cellulose Degradation Biophysical Journal. 114: 584a-585a. DOI: 10.1016/j.bpj.2017.11.3198 |
0.071 |
|
2017 |
Shams H, Mofrad MR. Allosteric Regulation of Vinculin Activation by Alpha-Actinin Biophysical Journal. 112: 498a. DOI: 10.1016/j.bpj.2016.11.2694 |
0.07 |
|
2018 |
Madani A, Arnaout R, Mofrad M, Arnaout R. Fast and accurate view classification of echocardiograms using deep learning. Npj Digital Medicine. 1. PMID 30828647 DOI: 10.1038/s41746-017-0013-1 |
0.068 |
|
2019 |
Madani A, Bakhaty A, Kim J, Mubarak Y, Mofrad M. Bridging finite element and machine learning modeling: stress prediction of arterial walls in atherosclerosis. Journal of Biomechanical Engineering. PMID 30912802 DOI: 10.1115/1.4043290 |
0.067 |
|
2010 |
Mofrad MRT, La Magna A, Ishihara R, Ming H, Beenakker K. A three-dimensional phase-field simulation of pulsed laser induced epitaxial growth of silicon Journal of Optoelectronics and Advanced Materials. 12: 701-706. |
0.066 |
|
2015 |
Kheradvar A, Groves EM, Dasi LP, Alavi SH, Tranquillo R, Grande-Allen KJ, Simmons CA, Griffith B, Falahatpisheh A, Goergen CJ, Mofrad MR, Baaijens F, Little SH, Canic S. Emerging trends in heart valve engineering: Part I. Solutions for future. Annals of Biomedical Engineering. 43: 833-43. PMID 25488074 DOI: 10.1007/S10439-014-1209-Z |
0.064 |
|
2008 |
Karimi R, Zhu T, Bouma BE, Mofrad MR. Estimation of nonlinear mechanical properties of vascular tissues via elastography. Cardiovascular Engineering (Dordrecht, Netherlands). 8: 191-202. PMID 19048372 DOI: 10.1007/S10558-008-9061-0 |
0.061 |
|
2009 |
Du Y, Cropek D, Mofrad MRK, Weinberg EJ, Khademhosseini A, Borenstein J. Microfluidic systems for engineering vascularized tissue constructs Microfluidics For Biological Applications. 223-240. DOI: 10.1007/978-0-387-09480-9_7 |
0.061 |
|
2010 |
Chen T, Ishihara R, Mofrad MRT, Vollebregt S, Van Der Cingel J, Van Der Zwan M, Schellevis H, Beenakker K. High performance single-grain Ge TFTs without seed substrate Technical Digest - International Electron Devices Meeting, Iedm. 21.1.1-21.1.4. DOI: 10.1109/IEDM.2010.5703404 |
0.06 |
|
2023 |
Dickson A, Asgari E, McHardy AC, Mofrad MRK. GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations. Bioinformatics (Oxford, England). 39. PMID 36786404 DOI: 10.1093/bioinformatics/btad081 |
0.06 |
|
2018 |
Asgari E, Münch PC, Lesker TR, McHardy AC, Mofrad MRK. DiTaxa: Nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection. Bioinformatics (Oxford, England). PMID 30500871 DOI: 10.1093/bioinformatics/bty954 |
0.06 |
|
2018 |
Asgari E, Garakani K, McHardy AC, Mofrad MRK. MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples. Bioinformatics (Oxford, England). 34: i32-i42. PMID 29950008 DOI: 10.1093/bioinformatics/bty296 |
0.058 |
|
2012 |
Karimi M, Sodagar AM, Mofrad ME, Amiri P. Auxiliary-carrier load-shift keying for reverse data telemetry from biomedical implants 2012 Ieee Biomedical Circuits and Systems Conference: Intelligent Biomedical Electronics and Systems For Better Life and Better Environment, Biocas 2012 - Conference Publications. 220-223. DOI: 10.1109/BioCAS.2012.6418457 |
0.058 |
|
2020 |
Talebi S, Madani MH, Madani A, Chien A, Shen J, Mastrodicasa D, Fleischmann D, Chan FP, Mofrad MRK. Machine learning for endoleak detection after endovascular aortic repair. Scientific Reports. 10: 18343. PMID 33110113 DOI: 10.1038/s41598-020-74936-7 |
0.056 |
|
2019 |
Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, ... ... Mofrad MRK, et al. The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology. 20: 244. PMID 31744546 DOI: 10.1186/S13059-019-1835-8 |
0.055 |
|
2015 |
Kheradvar A, Groves EM, Falahatpisheh A, Mofrad MK, Hamed Alavi S, Tranquillo R, Dasi LP, Simmons CA, Jane Grande-Allen K, Goergen CJ, Baaijens F, Little SH, Canic S, Griffith B. Emerging Trends in Heart Valve Engineering: Part IV. Computational Modeling and Experimental Studies Annals of Biomedical Engineering. DOI: 10.1007/s10439-015-1394-4 |
0.054 |
|
2020 |
Lesani A, Kazemnejad S, Moghimi Zand M, Azadi M, Jafari H, Mofrad MRK, Nosrati R. Quantification of human sperm concentration using machine learning-based spectrophotometry. Computers in Biology and Medicine. 127: 104061. PMID 33126127 DOI: 10.1016/j.compbiomed.2020.104061 |
0.054 |
|
2015 |
Mofrad MR, Nezhad ME, Akbari H, Atharizade M, Miranzadeh MB. Evaluation of efficacy of advanced oxidation processes fenton, fenton-like and photo-fenton for removal of phenol from aqueous solutions Journal of the Chemical Society of Pakistan. 37: 266-271. |
0.053 |
|
2014 |
Seidabady M, Mofrad MN, Zayeri F. A study of correlation between Ramsay "Sedation Level" scale and Richmond "Agitation-Sedation" scale and physiological parameters to determine the need for sedation in patients undergoing mechanical ventilation, 2013 Biosciences Biotechnology Research Asia. 11: 621-626. DOI: 10.13005/bbra/1314 |
0.051 |
|
2020 |
Mofrad MMG, Pourzamani H, Amin MM, Parseh I, Alipour M. In situ treatment of metalworking wastewater by chemical addition-dissolved air flotation coupled with UV, HO & ZnO. Heliyon. 6: e03091. PMID 31909262 DOI: 10.1016/j.heliyon.2019.e03091 |
0.051 |
|
2014 |
Mofrad MH, Maillart LM, Norman BA, Rajgopal J. Dynamically optimizing the administration of vaccines from multi-dose vials Iie Transactions (Institute of Industrial Engineers). 46: 623-635. DOI: 10.1080/0740817X.2013.849834 |
0.051 |
|
2010 |
De S, Guilak F, Mofrad MRK. Computational modeling in biomechanics Computational Modeling in Biomechanics. 1-581. DOI: 10.1007/978-90-481-3575-2 |
0.05 |
|
2013 |
Mofrad MN. Using blended learning model for large group teaching in medical education Biomedical and Pharmacology Journal. 6: 233-240. DOI: 10.13005/bpj/408 |
0.05 |
|
2013 |
Mofrad MN, Anboohi SZ. Measures to achieve active learning in large classes, using the workshop method in nursing education Biosciences Biotechnology Research Asia. 10: 731-738. DOI: 10.13005/bbra/1189 |
0.048 |
|
2014 |
Stutters L, Youngs G, Mofrad M. Photo Kiosk Architecture Society For Imaging Science and Technology - 6th International Symposium On Technologies For Digital Photo Fulfillment 2015. 21-28. |
0.046 |
|
2009 |
Derakhshandeh J, Mofrad MRT, Ishihara R, Beenakker CIM. Analog and digital output lateral photodiodes fabricated by μ-Czochralski process at low temperature Device Research Conference - Conference Digest, Drc. 93-94. DOI: 10.1109/DRC.2009.5354856 |
0.045 |
|
2016 |
Saghafi N, Roodsary ZY, Kadkhodaeian S, Mofrad MH, Farahabadi EH, Hoseinyfarahabady M. Comparison of adnexal mass in women undergoing mass excision during the antepartum period and cesarean section Oman Medical Journal. 31: 217-222. DOI: 10.5001/omj.2016.41 |
0.044 |
|
2022 |
Bardideh F, Jarareh J, Mofrad M, Bardideh K. The Effectiveness of Integrated Group Therapy on Prolonged Grief Disorder of Bereaved People from COVID-19 Randomized Controlled Trial. Omega. 302228221141126. PMID 38124328 DOI: 10.1177/00302228221141126 |
0.044 |
|
2013 |
Fujii M, Ishikawa Y, Ishihara R, Van Der Cingel J, Mofrad MRT, Horita M, Uraoka Y. Low temperature high-mobility InZnO thin-film transistors fabricated by excimer laser annealing Applied Physics Letters. 102. DOI: 10.1063/1.4798519 |
0.044 |
|
2018 |
Madani A, Ong JR, Tibrewal A, Mofrad MRK. Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease. Npj Digital Medicine. 1: 59. PMID 31304338 DOI: 10.1038/s41746-018-0065-x |
0.044 |
|
2015 |
Kheradvar A, Groves EM, Simmons CA, Griffith B, Alavi SH, Tranquillo R, Dasi LP, Falahatpisheh A, Grande-Allen KJ, Goergen CJ, Mofrad MR, Baaijens F, Canic S, Little SH. Emerging trends in heart valve engineering: Part III. Novel technologies for mitral valve repair and replacement. Annals of Biomedical Engineering. 43: 858-70. PMID 25287646 DOI: 10.1007/S10439-014-1129-Y |
0.041 |
|
2015 |
Javid A, Vahedian H, Sodagar AM, Mofrad ME. Low-power, high-data-rate, BPSK demodulator for implantable biomedicai applications 2014 21st Ieee International Conference On Electronics, Circuits and Systems, Icecs 2014. 415-418. DOI: 10.1109/ICECS.2014.7050010 |
0.04 |
|
2020 |
Khaledi A, Weimann A, Schniederjans M, Asgari E, Kuo TH, Oliver A, Cabot G, Kola A, Gastmeier P, Hogardt M, Jonas D, Mofrad MR, Bremges A, McHardy AC, Häussler S. Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics. Embo Molecular Medicine. e10264. PMID 32048461 DOI: 10.15252/emmm.201910264 |
0.039 |
|
2011 |
Roudsari FV, Ayati S, Ghasemi M, Mofrad MH, Shakeri MT, Farshidi F, Shahabian M. Comparison of vaginal misoprostol with foley catheter for cervical ripening and induction of labor Iranian Journal of Pharmaceutical Research. 10: 149-154. |
0.036 |
|
2015 |
Kheradvar A, Groves EM, Goergen CJ, Alavi SH, Tranquillo R, Simmons CA, Dasi LP, Grande-Allen KJ, Mofrad MR, Falahatpisheh A, Griffith B, Baaijens F, Little SH, Canic S. Emerging trends in heart valve engineering: Part II. Novel and standard technologies for aortic valve replacement. Annals of Biomedical Engineering. 43: 844-57. PMID 25449148 DOI: 10.1007/S10439-014-1191-5 |
0.036 |
|
2015 |
Homaee F, Mofrad MH, Mirtaymoore M, Aghaee MA, Eslame B. Clinicopathologic aspects and treatment results in malignant sex cord-stromal tumor of ovary Tehran University Medical Journal. 73: 485-490. |
0.035 |
|
2009 |
Mofrad MRT, Derakhshandeh J, Ishihara R, Baiano A, Van der Cingel J, Beenakker K. Stacking of single-grain thin-film transistors Japanese Journal of Applied Physics. 48. DOI: 10.1143/JJAP.48.03B015 |
0.034 |
|
2022 |
Bardideh K, Jarareh J, Bardideh F, Bardideh A, Mofrad M. The effectiveness of cognitive-behavioural group therapy on infertile men, a randomised clinical trial. Journal of Reproductive and Infant Psychology. 1-14. PMID 36576275 DOI: 10.1080/02646838.2022.2162024 |
0.033 |
|
2013 |
Mofrad MN, Karami M. The effects of portfolio method on self-directed learning (SDL) of nursing students Biosciences Biotechnology Research Asia. 10: 817-821. DOI: 10.13005/bbra/1201 |
0.033 |
|
2013 |
Mofrad MN, Pazargadi M. Designing, implementation and evaluation of a blended learning model in large class education Biosciences Biotechnology Research Asia. 10: 675-682. DOI: 10.13005/bbra/1180 |
0.032 |
|
2016 |
Mofrad MH, Garcia GGP, Maillart LM, Norman BA, Rajgopal J. Customizing immunization clinic operations to minimize open vial waste Socio-Economic Planning Sciences. 54: 1-17. DOI: 10.1016/J.Seps.2015.10.007 |
0.031 |
|
2014 |
Yousefi Z, Mofrad MH, Kazemianfar Z, Ayatollahi H, Tavassoli F, Beyranvandi M, Aghayi MA. Comparison of serum levels of HSP70 and CA125 in patients with epithelial ovarian cancer and patients with benign ovarian masses Iranian Journal of Obstetrics, Gynecology and Infertility. 17: 1-5. |
0.028 |
|
2013 |
Banaei-Kashani F, Asghari M, Mofrad MR, Shahabi C, Brenskelle L. SDPF: A framework for online, real-time cleansing of upstream operating data Society of Petroleum Engineers - Spe Western Regional / Pacific Section Aapg Joint Technical Conference 2013: Energy and the Environment Working Together For the Future. 741-749. |
0.028 |
|
2011 |
Mofrad MH, Homaeei F, Esmaele H, Ayate S, Reabe HN. Evaluating clinico-pathologic characteristics of genital sarcoma: A retrospective study in Mashhad Tehran University Medical Journal. 68: 743-748. |
0.028 |
|
2021 |
Kalantary RR, Jamshidi A, Mofrad MMG, Jafari AJ, Heidari N, Fallahizadeh S, Hesami Arani M, Torkashvand J. Effect of COVID-19 pandemic on medical waste management: a case study. Journal of Environmental Health Science & Engineering. 1-6. PMID 33758671 DOI: 10.1007/s40201-021-00650-9 |
0.028 |
|
2015 |
Kadkhodayan S, Mofrad MH, Saghafi N, Mokhber N, Rafaati M. Evaluation of sexual dysfunction in women with ovarian cancer admitted to Ghaem and Omid hospitals in Mashhad Iranian Journal of Obstetrics, Gynecology and Infertility. 18: 1-7. |
0.024 |
|
2012 |
Ishihara R, Mofrad MRT, Derakhshandeh J, Golshani N, Beenakker CIM. Monolithic 3D-ICs with single grain Si thin film transistors Icsict 2012 - 2012 Ieee 11th International Conference On Solid-State and Integrated Circuit Technology, Proceedings. DOI: 10.1109/ICSICT.2012.6467714 |
0.023 |
|
2008 |
Mofrad MRT, Ishihara R, Derakhshandeh J, Baiano A, Van Der Cingel J, Beenakker C. Monolithic 3D integration of single-grain Si TFTs Materials Research Society Symposium Proceedings. 1066: 483-489. |
0.023 |
|
2018 |
Asgari E, Garakani K, McHardy AC, Mofrad MRK. MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples. Bioinformatics (Oxford, England). PMID 30099528 DOI: 10.1093/bioinformatics/bty652 |
0.021 |
|
2015 |
Yousefi Z, Kadkhodayan S, Mofrad MH, Hoseini E, Mottaghi M, Moloughi S, Alamatian A. Prevalence of malignant adnexal masses in pregnancy at gynecology and oncology department of Ghaem hospital from 2010 to 2014 Iranian Journal of Obstetrics, Gynecology and Infertility. 18: 1-6. |
0.021 |
|
2009 |
Leach JR, Rayz VL, Mofrad MRK, Wintermark M, Saloner D. Patient specific FEM analysis of the atherosclerotic carotid bifurcation Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 177-178. DOI: 10.1115/SBC2009-206828 |
0.021 |
|
2011 |
St. Michel G, Mofrad M, Bowie T. A case study on sustainability through the application of the principles of pavement management 2011 Conference and Exhibition of the Transportation Association of Canada - Transportation Successes: Let's Build On Them, Tac/Atc 2011. |
0.018 |
|
2015 |
Mofrad MH, Hoseini E, Farazestanian M, Boroumand M. Ectopic pregnancy in the previous cesarean scar (A case report) Iranian Journal of Obstetrics, Gynecology and Infertility. 18: 20-24. |
0.017 |
|
2007 |
De S, Guilak F, Mofrad MRK. Special Issue on Computational Bioengineering Computer Methods in Applied Mechanics and Engineering. 196: 2963-2964. DOI: 10.1016/J.Cma.2007.01.011 |
0.017 |
|
2013 |
Kamm RD, Mofrad MRK. Introduction Cellular Mechanotransduction: Diverse Perspectives From Molecules to Tissues. 1-19. DOI: 10.1017/CBO9781139195874.002 |
0.016 |
|
2014 |
Yousefi Z, Mofrad MH, AfzalAghaee M, Sharifi N, Jafarian M. Evaluation of related factors of remained dysplasia after treatment of cervical intraepithelial Neoplasia by Cold knife Conization (Longitudinal study) Iranian Journal of Obstetrics, Gynecology and Infertility. 17: 1-8. |
0.014 |
|
2015 |
Mofrad MH, Ayati S, Ayatollahi H, Sima H, Shakeri MT, Haghighi SH, Malakouti H. Correlation of helicobacter pylori infection seropositivity and hyperemesis gravidarum Iranian Journal of Obstetrics, Gynecology and Infertility. 18: 1-5. |
0.01 |
|
2015 |
Mofrad MH, Dehkordi AK, Tizabi NM, Amirian M. Survey of sexual dysfunction in women with cervical cancer and a history of pelvic radiation therapy in 2009 to 2013 in Ghaem and Omid hospitals, Mashhad Iranian Journal of Obstetrics, Gynecology and Infertility. 18: 9-18. |
0.01 |
|
2014 |
Golmakani N, Imamverdikhan AP, Mofrad MH, Tabasi AS, Sistani NS, Shakeri MT. The comparison of clinical and laboratory indexes for diagnosis of vaginal atrophy in postmenopausal women Iranian Journal of Obstetrics, Gynecology and Infertility. 17: 10-17. |
0.01 |
|
2013 |
Mofrad MRK, Kamm RD. Preface Cellular Mechanotransduction: Diverse Perspectives From Molecules to Tissues. xi-xii. DOI: 10.1017/CBO9781139195874.001 |
0.01 |
|
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