Benjamin P. Bowen, Ph.D. - Publications

2003 Arizona State University, Tempe, AZ, United States 
Physical Chemistry

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Chevrette MG, Carlos-Shanley C, Louie KB, Bowen BP, Northen TR, Currie CR. Taxonomic and Metabolic Incongruence in the Ancient Genus . Frontiers in Microbiology. 10: 2170. PMID 31616394 DOI: 10.3389/fmicb.2019.02170  0.76
2019 Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, et al. Cooking shapes the structure and function of the gut microbiome. Nature Microbiology. PMID 31570867 DOI: 10.1038/s41564-019-0569-4  0.76
2019 Erbilgin O, Rübel O, Louie KB, Trinh M, Raad M, Wildish T, Udwary D, Hoover C, Deutsch S, Northen TR, Bowen BP. MAGI: A method for metabolite, annotation, and gene integration. Acs Chemical Biology. PMID 30896917 DOI: 10.1021/acschembio.8b01107  0.76
2019 Roth MS, Gallaher SD, Westcott DJ, Iwai M, Louie KB, Mueller M, Walter A, Foflonker F, Bowen BP, Ataii NN, Song J, Chen JH, Blaby-Haas C, Larabell C, Auer M, et al. Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. The Plant Cell. PMID 30787178 DOI: 10.1105/tpc.18.00742  0.52
2018 Porcar M, Louie KB, Kosina SM, Van Goethem MW, Bowen BP, Tanner K, Northen TR. Microbial Ecology on Solar Panels in Berkeley, CA, United States. Frontiers in Microbiology. 9: 3043. PMID 30619134 DOI: 10.3389/fmicb.2018.03043  0.76
2018 Sasse J, Kant J, Cole BJ, Klein AP, Arsova B, Schlaepfer P, Gao J, Lewald K, Zhalnina K, Kosina S, Bowen BP, Treen D, Vogel J, Visel A, Watt M, et al. Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass. The New Phytologist. PMID 30585637 DOI: 10.1111/nph.15662  0.76
2018 Kosina SM, Greiner AM, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. Bmc Microbiology. 18: 115. PMID 30208844 DOI: 10.1186/s12866-018-1256-y  0.76
2018 Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology. PMID 29556109 DOI: 10.1038/s41564-018-0129-3  0.76
2018 Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, et al. An integrated workflow for phenazine-modifying enzyme characterization. Journal of Industrial Microbiology & Biotechnology. PMID 29546662 DOI: 10.1007/s10295-018-2025-5  0.76
2018 Swenson TL, Karaoz U, Swenson JM, Bowen BP, Northen TR. Linking soil biology and chemistry in biological soil crust using isolate exometabolomics. Nature Communications. 9: 19. PMID 29296020 DOI: 10.1038/s41467-017-02356-9  0.76
2017 Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, et al. Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris. Mbio. 8. PMID 29138306 DOI: 10.1128/mBio.01780-17  0.76
2017 Gao J, Louie KB, Steinke P, Bowen BP, Raad M, Zuckermann RN, Siuzdak G, Northen TR. Morphology Driven Control of Metabolite Selectivity using Nanostructure-initiator Mass Spectrometry. Analytical Chemistry. PMID 28520405 DOI: 10.1021/acs.analchem.7b00599  0.76
2017 Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/ng.3859  0.76
2017 Raad M, de Rond T, Rübel O, Keasling JD, Northen TR, Bowen BP. OpenMSI Arrayed Analysis Toolkit: Analyzing spatially defined samples using mass spectrometry imaging. Analytical Chemistry. PMID 28467051 DOI: 10.1021/acs.analchem.6b05004  0.76
2017 Erbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR. Dynamic substrate preferences predict metabolic properties of a simple microbial consortium. Bmc Bioinformatics. 18: 57. PMID 28114881 DOI: 10.1186/s12859-017-1478-2  0.76
2017 Baran R, Lau R, Bowen BP, Diamond S, Jose N, Garcia-Pichel F, Northen TR. Extensive turnover of compatible solutes in cyanobacteria revealed by deuterium oxide (D2O) stable isotope probing. Acs Chemical Biology. PMID 28068058 DOI: 10.1021/acschembio.6b00890  0.76
2016 Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D. A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nature Communications. 7: 13215. PMID 27782150 DOI: 10.1038/ncomms13215  0.76
2016 Xie X, Yi Z, Sinha S, Madan M, Bowen BP, Langlais P, Ma D, Mandarino L, Meyer C. Proteomics analyses of subcutaneous adipocytes reveal novel abnormalities in human insulin resistance. Obesity (Silver Spring, Md.). 24: 1506-14. PMID 27345962 DOI: 10.1002/oby.21528  0.96
2016 Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Frontiers in Microbiology. 7: 525. PMID 27148214 DOI: 10.3389/fmicb.2016.00525  0.96
2016 Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman HY, Gilbert B, Silver WL, Northen TR, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Frontiers in Microbiology. 7: 323. PMID 27014243 DOI: 10.3389/fmicb.2016.00323  0.96
2016 Gao J, Raad M, Bowen BP, Zuckermann RN, Northen TR. The Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry. Analytical Chemistry. PMID 26741735 DOI: 10.1021/acs.analchem.5b03452  0.96
2015 Deng K, Guenther JM, Gao J, Bowen BP, Tran H, Reyes-Ortiz V, Cheng X, Sathitsuksanoh N, Heins R, Takasuka TE, Bergeman LF, Geertz-Hansen H, Deutsch S, Loqué D, Sale KL, et al. Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS. Frontiers in Bioengineering and Biotechnology. 3: 153. PMID 26528471 DOI: 10.3389/fbioe.2015.00153  0.76
2015 Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nature Communications. 6: 8289. PMID 26392107 DOI: 10.1038/ncomms9289  0.96
2015 Fischer CR, Ruebel O, Bowen BP. An accessible, scalable ecosystem for enabling and sharing diverse mass spectrometry imaging analyses. Archives of Biochemistry and Biophysics. PMID 26365033 DOI: 10.1016/  0.96
2015 Dalisay DS, Kim KW, Lee C, Yang H, Rübel O, Bowen BP, Davin LB, Lewis NG. Dirigent Protein-Mediated Lignan and Cyanogenic Glucoside Formation in Flax Seed: Integrated Omics and MALDI Mass Spectrometry Imaging. Journal of Natural Products. 78: 1231-42. PMID 25981198 DOI: 10.1021/acs.jnatprod.5b00023  0.96
2015 Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie EL. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in Microbiology. 6: 277. PMID 25926821 DOI: 10.3389/fmicb.2015.00277  0.96
2015 Yang J, Rübel O, Prabhat, Mahoney MW, Bowen BP. Identifying important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical Chemistry. 87: 4658-66. PMID 25825055 DOI: 10.1021/ac5040264  0.96
2015 Yao Y, Bowen BP, Baron D, Poznanski D. SciDB for high-performance array-structured science data at NERSC Computing in Science and Engineering. 17: 44-52. DOI: 10.1109/MCSE.2015.43  0.96
2015 Swenson TL, Bowen BP, Nico PS, Northen TR. Competitive sorption of microbial metabolites on an iron oxide mineral Soil Biology and Biochemistry. 90: 34-41. DOI: 10.1016/j.soilbio.2015.07.022  0.96
2015 Swenson TL, Jenkins S, Bowen BP, Northen TR. Untargeted soil metabolomics methods for analysis of extractable organic matter Soil Biology and Biochemistry. 80: 189-198. DOI: 10.1016/j.soilbio.2014.10.007  0.96
2015 Nath S, Hoover C, Louie K, Bowen BP, Petzold C, Kim J, Northen T, Rubin E, Keasling JD, Hillson NJ, Deutsch S. Construction and characterization of a refactored actinorhodin biosynthetic cluster Synthetic Biology: Engineering, Evolution, and Design Conference 2015, Seed 2015. 2: 886-887.  0.96
2014 Wang Y, Kora G, Bowen BP, Pan C. MIDAS: a database-searching algorithm for metabolite identification in metabolomics. Analytical Chemistry. 86: 9496-503. PMID 25157598 DOI: 10.1021/ac5014783  0.96
2014 Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, et al. Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry. Acs Chemical Biology. 9: 2082-91. PMID 24984213 DOI: 10.1021/cb500244v  0.96
2013 Louie KB, Bowen BP, Cheng X, Berleman JE, Chakraborty R, Deutschbauer A, Arkin A, Northen TR. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Analytical Chemistry. 85: 10856-62. PMID 24111681 DOI: 10.1021/ac402240q  0.96
2013 Rübel O, Greiner A, Cholia S, Louie K, Bethel EW, Northen TR, Bowen BP. OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Analytical Chemistry. 85: 10354-61. PMID 24087878 DOI: 10.1021/ac402540a  0.96
2013 Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The Isme Journal. 7: 2178-91. PMID 23739051 DOI: 10.1038/ismej.2013.83  0.96
2013 Fischer CR, Bowen BP, Pan C, Northen TR, Banfield JF. Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. Acs Chemical Biology. 8: 1755-63. PMID 23713674 DOI: 10.1021/cb400210q  0.96
2013 Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao JH, Hellerstein M, Northen TR. Mass spectrometry imaging for in situ kinetic histochemistry. Scientific Reports. 3: 1656. PMID 23584513 DOI: 10.1038/srep01656  0.96
2013 Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF. Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. Mbio. 4: e00484-12. PMID 23481603 DOI: 10.1128/mBio.00484-12  0.96
2013 Wattacheril J, Seeley EH, Angel P, Chen H, Bowen BP, Lanciault C, Caprioli RM, Abumrad N, Flynn CR. Differential intrahepatic phospholipid zonation in simple steatosis and nonalcoholic steatohepatitis. Plos One. 8: e57165. PMID 23451176 DOI: 10.1371/journal.pone.0057165  0.96
2013 Hussey SE, Sharoff CG, Garnham A, Yi Z, Bowen BP, Mandarino LJ, Hargreaves M. Effect of exercise on the skeletal muscle proteome in patients with type 2 diabetes. Medicine and Science in Sports and Exercise. 45: 1069-76. PMID 23274603 DOI: 10.1249/MSS.0b013e3182814917  0.96
2013 Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. Acs Chemical Biology. 8: 189-99. PMID 23082955 DOI: 10.1021/cb300477w  0.96
2012 Lee do Y, Bowen BP, Nguyen DH, Parsa S, Huang Y, Mao JH, Northen TR. Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population. Radiation Research. 178: 551-5. PMID 23051006 DOI: 10.1667/RR2990.1  0.96
2012 Fischer CR, Wilmes P, Bowen BP, Northen TR, Banfield JF. Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities Metabolomics. 8: 566-578. DOI: 10.1007/s11306-011-0344-x  0.96
2011 Tamboli RA, Hajri T, Jiang A, Marks-Shulman PA, Williams DB, Clements RH, Melvin W, Bowen BP, Shyr Y, Abumrad NN, Flynn CR. Reduction in inflammatory gene expression in skeletal muscle from Roux-en-Y gastric bypass patients randomized to omentectomy. Plos One. 6: e28577. PMID 22194858 DOI: 10.1371/journal.pone.0028577  0.96
2011 Baran R, Bowen BP, Northen TR. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Molecular Biosystems. 7: 3200-6. PMID 21935552 DOI: 10.1039/c1mb05196b  0.96
2011 Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T. Improved genome annotation through untargeted detection of pathway-specific metabolites. Bmc Genomics. 12: S6. PMID 21810208 DOI: 10.1186/1471-2164-12-S1-S6  0.96
2011 Ghosh S, Lertwattanarak R, Lefort N, Molina-Carrion M, Joya-Galeana J, Bowen BP, Garduno-Garcia Jde J, Abdul-Ghani M, Richardson A, DeFronzo RA, Mandarino L, Van Remmen H, Musi N. Reduction in reactive oxygen species production by mitochondria from elderly subjects with normal and impaired glucose tolerance. Diabetes. 60: 2051-60. PMID 21677280 DOI: 10.2337/db11-0121  0.96
2011 Pan C, Fischer CR, Hyatt D, Bowen BP, Hettich RL, Banfield JF. Quantitative tracking of isotope flows in proteomes of microbial communities. Molecular & Cellular Proteomics : McP. 10: M110.006049. PMID 21285414 DOI: 10.1074/mcp.M110.006049  0.96
2011 Reindl W, Bowen BP, Balamotis MA, Green JE, Northen TR. Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity. Integrative Biology : Quantitative Biosciences From Nano to Macro. 3: 460-7. PMID 21212877 DOI: 10.1039/c0ib00091d  0.96
2010 Wilmes P, Bowen BP, Thomas BC, Mueller RS, Denef VJ, VerBerkmoes NC, Hettich RL, Northen TR, Banfield JF. Metabolome-proteome differentiation coupled to microbial divergence. Mbio. 1. PMID 20978538 DOI: 10.1128/mBio.00246-10  0.96
2010 Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Analytical Chemistry. 82: 9034-42. PMID 20945921 DOI: 10.1021/ac1020112  0.96
2010 Lopes LB, Brophy CM, Flynn CR, Yi Z, Bowen BP, Smoke C, Seal B, Panitch A, Komalavilas P. A novel cell permeant peptide inhibitor of MAPKAP kinase II inhibits intimal hyperplasia in a human saphenous vein organ culture model. Journal of Vascular Surgery. 52: 1596-607. PMID 20864298 DOI: 10.1016/j.jvs.2010.06.168  0.96
2010 Lee DY, Bowen BP, Northen TR. Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging. Biotechniques. 49: 557-65. PMID 20701590 DOI: 10.2144/000113451  0.96
2010 Bowen BP, Northen TR. Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American Society For Mass Spectrometry. 21: 1471-6. PMID 20452782 DOI: 10.1016/j.jasms.2010.04.003  0.96
2010 Hwang H, Bowen BP, Lefort N, Flynn CR, De Filippis EA, Roberts C, Smoke CC, Meyer C, Højlund K, Yi Z, Mandarino LJ. Proteomics analysis of human skeletal muscle reveals novel abnormalities in obesity and type 2 diabetes. Diabetes. 59: 33-42. PMID 19833877 DOI: 10.2337/db09-0214  0.96
2009 Højlund K, Bowen BP, Hwang H, Flynn CR, Madireddy L, Geetha T, Langlais P, Meyer C, Mandarino LJ, Yi Z. In vivo phosphoproteome of human skeletal muscle revealed by phosphopeptide enrichment and HPLC-ESI-MS/MS. Journal of Proteome Research. 8: 4954-65. PMID 19764811 DOI: 10.1021/pr9007267  0.96
2009 Brower JB, Targovnik JH, Bowen BP, Caplan MR, Massia SP. Elevated glucose impairs the endothelial cell response to shear stress Cellular and Molecular Bioengineering. 2: 533-543. DOI: 10.1007/s12195-009-0080-8  0.96
2008 Yi Z, Bowen BP, Hwang H, Jenkinson CP, Coletta DK, Lefort N, Bajaj M, Kashyap S, Berria R, De Filippis EA, Mandarino LJ. Global relationship between the proteome and transcriptome of human skeletal muscle. Journal of Proteome Research. 7: 3230-41. PMID 18613714 DOI: 10.1021/pr800064s  0.96
2004 Bowen BP, Scruggs A, Enderlein J, Sauer M, Woodbury N. Implementation of neural networks for the identification of single molecules Journal of Physical Chemistry A. 108: 4799-4804. DOI: 10.1021/jp036456v  0.96
2004 Butler PJ, Patterson B, Ferko M, Bowen BP. Time-resolved fluorescence microscopy of stressed membranes of living endothelial cells Conference Record - Asilomar Conference On Signals, Systems and Computers. 2: 1826-1829.  0.96
2004 Haffa ALM, Lin S, Williams JC, Bowen BP, Taguchi AKW, Allen JP, Woodbury NW. Controlling the pathway of photosynthetic charge separation in bacterial reaction centers Journal of Physical Chemistry B. 108: 4-7.  0.96
2003 Bowen BP, Woodbury NW. TOTO binding affinity analysis using single-molecule fluorescence spectroscopy. Photochemistry and Photobiology. 78: 582-6. PMID 14743866 DOI: 10.1562/0031-8655(2003)078<0582:TBAAUS>2.0.CO;2  0.96
2003 Bowen BP, Enderlein J, Woodbury NW. Single-molecule fluorescence spectroscopy of TOTO on poly-AT and poly-GC DNA. Photochemistry and Photobiology. 78: 576-81. PMID 14743865 DOI: 10.1562/0031-8655(2003)078<0576:SFSOTO>2.0.CO;2  0.96
2003 Montaño GA, Bowen BP, LaBelle JT, Woodbury NW, Pizziconi VB, Blankenship RE. Characterization of Chlorobium tepidum chlorosomes: a calculation of bacteriochlorophyll c per chlorosome and oligomer modeling. Biophysical Journal. 85: 2560-5. PMID 14507718 DOI: 10.1016/S0006-3495(03)74678-5  0.96
2003 Bowen BP, Enderlein J, Woodbury NWT. Multiparameter single-molecule fluorescence measurements of DNA intercalating fluorophores Proceedings of Spie - the International Society For Optical Engineering. 4962: 22-26. DOI: 10.1117/12.486348  0.96
2002 Butler PJ, Bowen BP, Woodbury N. Spatial mapping of membrane phases in confluent endothelial cells Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 1: 582-583.  0.96
2002 Butler PJ, Bowen BP, Woodbury N. Rapid, multipoint molecular spectroscopic measurements of shear effects on endothelial cell membranes Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 1: 320.  0.96
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