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Benjamin P. Bowen, Ph.D. - Publications

Affiliations: 
2003 Arizona State University, Tempe, AZ, United States 
Area:
Physical Chemistry
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Year Citation  Score
2024 Markel K, Novak V, Bowen BP, Tian Y, Chen YC, Sirirungruang S, Zhou A, Louie KB, Northen TR, Eudes A, Scheller HV, Shih PM. Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. Plant Physiology. PMID 38236304 DOI: 10.1093/plphys/kiae001  0.519
2024 Novak V, Andeer PF, Bowen BP, Ding Y, Zhalnina K, Hofmockel KS, Tomaka C, Harwood TV, van Winden MCM, Golini AN, Kosina SM, Northen TR. Reproducible growth of in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation. Science Advances. 10: eadg7888. PMID 38170767 DOI: 10.1126/sciadv.adg7888  0.541
2023 Zheng Q, Hu Y, Kosina SM, Van Goethem MW, Tringe SG, Bowen BP, Northen TR. Conservation of beneficial microbes between the rhizosphere and the cyanosphere. The New Phytologist. PMID 37668195 DOI: 10.1111/nph.19225  0.541
2023 Harwood TV, Treen DGC, Wang M, de Jong W, Northen TR, Bowen BP. BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring. Scientific Reports. 13: 13462. PMID 37596301 DOI: 10.1038/s41598-023-40496-9  0.499
2023 Ha NS, Onley JR, Deng K, Andeer P, Bowen BP, Gupta K, Kim PW, Kuch N, Kutschke M, Parker A, Song F, Fox B, Adams PD, de Raad M, Northen TR. A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening. Lab On a Chip. PMID 37401915 DOI: 10.1039/d2lc00980c  0.533
2023 Davenport R, Bowen BP, Lynch LM, Kosina SM, Shabtai I, Northen TR, Lehmann J. Decomposition decreases molecular diversity and ecosystem similarity of soil organic matter. Proceedings of the National Academy of Sciences of the United States of America. 120: e2303335120. PMID 37307452 DOI: 10.1073/pnas.2303335120  0.532
2023 Palmer M, Covington JK, Zhou EM, Thomas SC, Habib N, Seymour CO, Lai D, Johnston J, Hashimi A, Jiao JY, Muok AR, Liu L, Xian WD, Zhi XY, Li MM, ... ... Bowen BP, et al. Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past. The Isme Journal. PMID 37041326 DOI: 10.1038/s41396-023-01405-0  0.519
2023 de Raad M, Koper K, Deng K, Bowen BP, Maeda HA, Northen TR. Mass spectrometry imaging-based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme. The Journal of Biological Chemistry. 299: 102939. PMID 36702250 DOI: 10.1016/j.jbc.2023.102939  0.569
2022 Howard-Varona C, Roux S, Bowen BP, Silva LP, Lau R, Schwenck SM, Schwartz S, Woyke T, Northen T, Sullivan MB, Floge SA. Protist impacts on marine cyanovirocell metabolism. Isme Communications. 2: 94. PMID 37938263 DOI: 10.1038/s43705-022-00169-6  0.543
2022 Wilhelm RC, Barnett SE, Swenson TL, Youngblut ND, Koechli CN, Bowen BP, Northen TR, Buckley DH. Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil. Applied and Environmental Microbiology. e0083922. PMID 36300927 DOI: 10.1128/aem.00839-22  0.545
2022 Wang Y, Wilhelm RC, Swenson TL, Silver A, Andeer PF, Golini A, Kosina SM, Bowen BP, Buckley DH, Northen TR. Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies. Frontiers in Microbiology. 13: 914472. PMID 35756023 DOI: 10.3389/fmicb.2022.914472  0.548
2022 de Raad M, Li YV, Kuehl JV, Andeer PF, Kosina SM, Hendrickson A, Saichek NR, Golini AN, Han Z, Wang Y, Bowen BP, Deutschbauer AM, Arkin AP, Chakraborty R, Northen TR. A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria. Frontiers in Microbiology. 13: 855331. PMID 35694313 DOI: 10.3389/fmicb.2022.855331  0.573
2022 Treen DGC, Wang M, Xing S, Louie KB, Huan T, Dorrestein PC, Northen TR, Bowen BP. SIMILE enables alignment of tandem mass spectra with statistical significance. Nature Communications. 13: 2510. PMID 35523965 DOI: 10.1038/s41467-022-30118-9  0.52
2021 Kosina SM, Rademacher P, Wetmore KM, de Raad M, Zemla M, Zane GM, Zulovich JJ, Chakraborty R, Bowen BP, Wall JD, Auer M, Arkin AP, Deutschbauer AM, Northen TR. Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Co-culture Biofilms. Frontiers in Microbiology. 12: 757856. PMID 34956122 DOI: 10.3389/fmicb.2021.757856  0.526
2021 Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, et al. GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nature Methods. PMID 34862502 DOI: 10.1038/s41592-021-01339-5  0.491
2021 Carrell AA, Veličković D, Lawrence TJ, Bowen BP, Louie KB, Carper DL, Chu RK, Mitchell HD, Orr G, Markillie LM, Jawdy SS, Grimwood J, Shaw AJ, Schmutz J, Northen TR, et al. Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism. The Isme Journal. PMID 34845335 DOI: 10.1038/s41396-021-01136-0  0.558
2021 Van Goethem MW, Osborn AR, Bowen BP, Andeer PF, Swenson TL, Clum A, Riley R, He G, Koriabine M, Sandor L, Yan M, Daum CG, Yoshinaga Y, Makhalanyane TP, Garcia-Pichel F, et al. Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics. Communications Biology. 4: 1302. PMID 34795375 DOI: 10.1038/s42003-021-02809-4  0.555
2021 Brisson V, Mayali X, Bowen B, Golini A, Thelen M, Stuart RK, Northen TR. Identification of Effector Metabolites Using Exometabolite Profiling of Diverse Microalgae. Msystems. e0083521. PMID 34726483 DOI: 10.1128/mSystems.00835-21  0.542
2021 Swift CL, Louie KB, Bowen BP, Hooker CA, Solomon KV, Singan V, Daum C, Pennacchio CP, Barry K, Shutthanandan V, Evans JE, Grigoriev IV, Northen TR, O'Malley MA. Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship. Mbio. e0144221. PMID 34399620 DOI: 10.1128/mBio.01442-21  0.555
2021 Jabusch LK, Kim PW, Chiniquy D, Zhao Z, Wang B, Bowen B, Kang AJ, Yoshikuni Y, Deutschbauer AM, Singh AK, Northen TR. Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant-Microbe Interactions. International Journal of Molecular Sciences. 22. PMID 34360661 DOI: 10.3390/ijms22157880  0.501
2021 Ing N, Deng K, Chen Y, Aulitto M, Gin JW, Pham TLM, Petzold CJ, Singer SW, Bowen B, Sale KL, Simmons BA, Singh AK, Adams PD, Northen TR. A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities. Scientific Reports. 11: 11803. PMID 34083602 DOI: 10.1038/s41598-021-91181-8  0.512
2021 Thomas SC, Payne D, Tamadonfar KO, Seymour CO, Jiao JY, Murugapiran SK, Lai D, Lau R, Bowen BP, Silva LP, Louie KB, Huntemann M, Clum A, Spunde A, Pillay M, et al. Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of and Three Candidate Species From China and Japan. Frontiers in Microbiology. 12: 632731. PMID 34017316 DOI: 10.3389/fmicb.2021.632731  0.552
2021 Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, Salamov A, Mondo SJ, Solomon KV, Wright AT, Northen TR, Grigoriev IV, Keller NP, O'Malley MA. Anaerobic gut fungi are an untapped reservoir of natural products. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33906945 DOI: 10.1073/pnas.2019855118  0.557
2021 Lenz R, Louie K, Sondreli K, Galanie S, Chen JG, Muchero W, Bowen B, Northen T, Leboldus J. Metabolic patterns in Septoria canker resistant and susceptible Populus trichocarpa genotypes 24 hours post-inoculation. Phytopathology. PMID 33881913 DOI: 10.1094/PHYTO-02-21-0053-R  0.523
2021 Calhoun S, Bell TAS, Dahlin LR, Kunde Y, LaButti K, Louie KB, Kuftin A, Treen D, Dilworth D, Mihaltcheva S, Daum C, Bowen BP, Northen TR, Guarnieri MT, Starkenburg SR, et al. A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology. Communications Biology. 4: 333. PMID 33712730 DOI: 10.1038/s42003-021-01859-y  0.517
2021 Murphy KM, Edwards J, Louie KB, Bowen BP, Sundaresan V, Northen TR, Zerbe P. Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 11: 333. PMID 33431904 DOI: 10.1038/s41598-020-79320-z  0.564
2019 Chevrette MG, Carlos-Shanley C, Louie KB, Bowen BP, Northen TR, Currie CR. Taxonomic and Metabolic Incongruence in the Ancient Genus . Frontiers in Microbiology. 10: 2170. PMID 31616394 DOI: 10.3389/Fmicb.2019.02170  0.602
2019 Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, et al. CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria. Nature Microbiology. PMID 31611640 DOI: 10.1038/S41564-019-0573-8  0.581
2019 Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, et al. Cooking shapes the structure and function of the gut microbiome. Nature Microbiology. PMID 31570867 DOI: 10.1038/S41564-019-0569-4  0.55
2019 Erbilgin O, Rübel O, Louie KB, Trinh M, Raad M, Wildish T, Udwary D, Hoover C, Deutsch S, Northen TR, Bowen BP. MAGI: A method for metabolite, annotation, and gene integration. Acs Chemical Biology. PMID 30896917 DOI: 10.1021/Acschembio.8B01107  0.596
2019 Roth MS, Gallaher SD, Westcott DJ, Iwai M, Louie KB, Mueller M, Walter A, Foflonker F, Bowen BP, Ataii NN, Song J, Chen JH, Blaby-Haas C, Larabell C, Auer M, et al. Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. The Plant Cell. PMID 30787178 DOI: 10.1105/Tpc.18.00742  0.587
2018 Porcar M, Louie KB, Kosina SM, Van Goethem MW, Bowen BP, Tanner K, Northen TR. Microbial Ecology on Solar Panels in Berkeley, CA, United States. Frontiers in Microbiology. 9: 3043. PMID 30619134 DOI: 10.3389/Fmicb.2018.03043  0.6
2018 Sasse J, Kant J, Cole BJ, Klein AP, Arsova B, Schlaepfer P, Gao J, Lewald K, Zhalnina K, Kosina S, Bowen BP, Treen D, Vogel J, Visel A, Watt M, et al. Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass. The New Phytologist. PMID 30585637 DOI: 10.1111/Nph.15662  0.586
2018 Kosina SM, Greiner AM, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. Bmc Microbiology. 18: 115. PMID 30208844 DOI: 10.1186/S12866-018-1256-Y  0.591
2018 Duncombe TA, Raad M, Bowen BP, Singh AK, Northen TR. Insulator Nanostructure Desorption Ionization Mass Spectrometry. Analytical Chemistry. PMID 30063326 DOI: 10.1021/Acs.Analchem.8B01989  0.55
2018 Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T, Arkin AP. Deciphering microbial interactions in synthetic human gut microbiome communities. Molecular Systems Biology. 14: e8157. PMID 29930200 DOI: 10.15252/Msb.20178157  0.572
2018 Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology. PMID 29556109 DOI: 10.1038/S41564-018-0129-3  0.579
2018 Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, et al. An integrated workflow for phenazine-modifying enzyme characterization. Journal of Industrial Microbiology & Biotechnology. PMID 29546662 DOI: 10.1007/S10295-018-2025-5  0.591
2018 Swenson TL, Karaoz U, Swenson JM, Bowen BP, Northen TR. Linking soil biology and chemistry in biological soil crust using isolate exometabolomics. Nature Communications. 9: 19. PMID 29296020 DOI: 10.1038/S41467-017-02356-9  0.606
2018 Jose NA, Lau R, Swenson TL, Klitgord N, Garcia-Pichel F, Bowen BP, Baran R, Northen TR. Flux balance modeling to predict bacterial survival during pulsed-activity events Biogeosciences. 15: 2219-2229. DOI: 10.5194/Bg-15-2219-2018  0.607
2017 Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, et al. Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris. Mbio. 8. PMID 29138306 DOI: 10.1128/Mbio.01780-17  0.569
2017 Lubbe A, Bowen BP, Northen T. Exometabolomic Analysis of Cross-Feeding Metabolites. Metabolites. 7. PMID 28976938 DOI: 10.3390/Metabo7040050  0.588
2017 Rubel O, Bowen BP. BASTet: Shareable and reproducible analysis and visualization of mass spectrometry imaging data via OpenMSI. Ieee Transactions On Visualization and Computer Graphics. PMID 28866551 DOI: 10.1109/Tvcg.2017.2744479  0.321
2017 Gao J, Louie KB, Steinke P, Bowen BP, Raad M, Zuckermann RN, Siuzdak G, Northen TR. Morphology Driven Control of Metabolite Selectivity using Nanostructure-initiator Mass Spectrometry. Analytical Chemistry. PMID 28520405 DOI: 10.1021/Acs.Analchem.7B00599  0.505
2017 Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859  0.547
2017 Raad M, de Rond T, Rübel O, Keasling JD, Northen TR, Bowen BP. OpenMSI Arrayed Analysis Toolkit: Analyzing spatially defined samples using mass spectrometry imaging. Analytical Chemistry. PMID 28467051 DOI: 10.1021/Acs.Analchem.6B05004  0.575
2017 Erbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR. Dynamic substrate preferences predict metabolic properties of a simple microbial consortium. Bmc Bioinformatics. 18: 57. PMID 28114881 DOI: 10.1186/S12859-017-1478-2  0.582
2017 Baran R, Lau R, Bowen BP, Diamond S, Jose N, Garcia-Pichel F, Northen TR. Extensive turnover of compatible solutes in cyanobacteria revealed by deuterium oxide (D2O) stable isotope probing. Acs Chemical Biology. PMID 28068058 DOI: 10.1021/Acschembio.6B00890  0.609
2017 Swenson TL, Couradeau E, Bowen BP, De Philippis R, Rossi F, Mugnai G, Northen TR. A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix Plant and Soil. 429: 53-64. DOI: 10.1007/S11104-017-3537-X  0.554
2016 Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D. A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nature Communications. 7: 13215. PMID 27782150 DOI: 10.1038/Ncomms13215  0.562
2016 Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Frontiers in Microbiology. 7: 525. PMID 27148214 DOI: 10.3389/Fmicb.2016.00525  0.576
2016 Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman HY, Gilbert B, Silver WL, Northen TR, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Frontiers in Microbiology. 7: 323. PMID 27014243 DOI: 10.3389/Fmicb.2016.00323  0.526
2016 Gao J, Raad M, Bowen BP, Zuckermann RN, Northen TR. The Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry. Analytical Chemistry. PMID 26741735 DOI: 10.1021/Acs.Analchem.5B03452  0.538
2015 Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, et al. Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae. Nature Plants. 1: 15107. PMID 27250540 DOI: 10.1038/Nplants.2015.107  0.554
2015 Deng K, Guenther JM, Gao J, Bowen BP, Tran H, Reyes-Ortiz V, Cheng X, Sathitsuksanoh N, Heins R, Takasuka TE, Bergeman LF, Geertz-Hansen H, Deutsch S, Loqué D, Sale KL, et al. Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS. Frontiers in Bioengineering and Biotechnology. 3: 153. PMID 26528471 DOI: 10.3389/Fbioe.2015.00153  0.564
2015 Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nature Communications. 6: 8289. PMID 26392107 DOI: 10.1038/Ncomms9289  0.593
2015 Fischer CR, Ruebel O, Bowen BP. An accessible, scalable ecosystem for enabling and sharing diverse mass spectrometry imaging analyses. Archives of Biochemistry and Biophysics. PMID 26365033 DOI: 10.1016/J.Abb.2015.08.021  0.312
2015 Yao Y, Sun T, Wang T, Ruebel O, Northen T, Bowen BP. Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases. Metabolites. 5: 431-42. PMID 26287255 DOI: 10.3390/Metabo5030431  0.582
2015 Dalisay DS, Kim KW, Lee C, Yang H, Rübel O, Bowen BP, Davin LB, Lewis NG. Dirigent Protein-Mediated Lignan and Cyanogenic Glucoside Formation in Flax Seed: Integrated Omics and MALDI Mass Spectrometry Imaging. Journal of Natural Products. 78: 1231-42. PMID 25981198 DOI: 10.1021/Acs.Jnatprod.5B00023  0.318
2015 Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie EL. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in Microbiology. 6: 277. PMID 25926821 DOI: 10.3389/Fmicb.2015.00277  0.585
2015 Miquel S, Leclerc M, Martin R, Chain F, Lenoir M, Raguideau S, Hudault S, Bridonneau C, Northen T, Bowen B, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P. Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii. Mbio. 6. PMID 25900655 DOI: 10.1128/Mbio.00300-15  0.536
2015 Castellanos-Martín A, Castillo-Lluva S, Sáez-Freire Mdel M, Blanco-Gómez A, Hontecillas-Prieto L, Patino-Alonso C, Galindo-Villardon P, Pérez Del Villar L, Martín-Seisdedos C, Isidoro-Garcia M, Abad-Hernández Mdel M, Cruz-Hernández JJ, Rodríguez-Sánchez CA, González-Sarmiento R, Alonso-López D, ... ... Bowen B, et al. Unraveling heterogeneous susceptibility and the evolution of breast cancer using a systems biology approach. Genome Biology. 16: 40. PMID 25853295 DOI: 10.1186/S13059-015-0599-Z  0.502
2015 Swenson TL, Bowen BP, Nico PS, Northen TR. Competitive sorption of microbial metabolites on an iron oxide mineral Soil Biology and Biochemistry. 90: 34-41. DOI: 10.1016/J.Soilbio.2015.07.022  0.604
2015 Swenson TL, Jenkins S, Bowen BP, Northen TR. Untargeted soil metabolomics methods for analysis of extractable organic matter Soil Biology and Biochemistry. 80: 189-198. DOI: 10.1016/J.Soilbio.2014.10.007  0.603
2014 Wang Y, Kora G, Bowen BP, Pan C. MIDAS: a database-searching algorithm for metabolite identification in metabolomics. Analytical Chemistry. 86: 9496-503. PMID 25157598 DOI: 10.1021/Ac5014783  0.349
2014 Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, et al. Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry. Acs Chemical Biology. 9: 2082-91. PMID 24984213 DOI: 10.1021/Cb500244V  0.572
2014 Miquel S, Leclerc M, Martin R, Hudault S, Bridonneau C, Raguideau S, Northen T, Bowen BP, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P. Tu1746 Faecalibacterium prausnitzii Provides Host Beneficial Metabolic Profile During Inflammation Gastroenterology. 146: S-832. DOI: 10.1016/S0016-5085(14)63022-5  0.568
2013 Cheng X, Hiras J, Deng K, Bowen B, Simmons BA, Adams PD, Singer SW, Northen TR. High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production. Frontiers in Microbiology. 4: 365. PMID 24367356 DOI: 10.3389/Fmicb.2013.00365  0.573
2013 Louie KB, Bowen BP, Cheng X, Berleman JE, Chakraborty R, Deutschbauer A, Arkin A, Northen TR. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Analytical Chemistry. 85: 10856-62. PMID 24111681 DOI: 10.1021/Ac402240Q  0.606
2013 Rübel O, Greiner A, Cholia S, Louie K, Bethel EW, Northen TR, Bowen BP. OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Analytical Chemistry. 85: 10354-61. PMID 24087878 DOI: 10.1021/Ac402540A  0.554
2013 Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The Isme Journal. 7: 2178-91. PMID 23739051 DOI: 10.1038/Ismej.2013.83  0.575
2013 Fischer CR, Bowen BP, Pan C, Northen TR, Banfield JF. Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. Acs Chemical Biology. 8: 1755-63. PMID 23713674 DOI: 10.1021/Cb400210Q  0.577
2013 Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao JH, Hellerstein M, Northen TR. Mass spectrometry imaging for in situ kinetic histochemistry. Scientific Reports. 3: 1656. PMID 23584513 DOI: 10.1038/Srep01656  0.584
2013 Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF. Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. Mbio. 4: e00484-12. PMID 23481603 DOI: 10.1128/Mbio.00484-12  0.627
2013 Wattacheril J, Seeley EH, Angel P, Chen H, Bowen BP, Lanciault C, Caprioli RM, Abumrad N, Flynn CR. Differential intrahepatic phospholipid zonation in simple steatosis and nonalcoholic steatohepatitis. Plos One. 8: e57165. PMID 23451176 DOI: 10.1371/Journal.Pone.0057165  0.31
2013 Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. Acs Chemical Biology. 8: 189-99. PMID 23082955 DOI: 10.1021/Cb300477W  0.611
2012 Lee do Y, Bowen BP, Nguyen DH, Parsa S, Huang Y, Mao JH, Northen TR. Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population. Radiation Research. 178: 551-5. PMID 23051006 DOI: 10.1667/Rr2990.1  0.557
2012 Greving M, Cheng X, Reindl W, Bowen B, Deng K, Louie K, Nyman M, Cohen J, Singh A, Simmons B, Adams P, Siuzdak G, Northen T. Acoustic deposition with NIMS as a high-throughput enzyme activity assay. Analytical and Bioanalytical Chemistry. 403: 707-11. PMID 22407334 DOI: 10.1007/S00216-012-5908-8  0.578
2012 Fischer CR, Wilmes P, Bowen BP, Northen TR, Banfield JF. Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities Metabolomics. 8: 566-578. DOI: 10.1007/S11306-011-0344-X  0.596
2011 Baran R, Bowen BP, Northen TR. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Molecular Biosystems. 7: 3200-6. PMID 21935552 DOI: 10.1039/C1Mb05196B  0.608
2011 Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T. Improved genome annotation through untargeted detection of pathway-specific metabolites. Bmc Genomics. 12: S6. PMID 21810208 DOI: 10.1186/1471-2164-12-S1-S6  0.604
2011 Pan C, Fischer CR, Hyatt D, Bowen BP, Hettich RL, Banfield JF. Quantitative tracking of isotope flows in proteomes of microbial communities. Molecular & Cellular Proteomics : McP. 10: M110.006049. PMID 21285414 DOI: 10.1074/Mcp.M110.006049  0.322
2011 Reindl W, Bowen BP, Balamotis MA, Green JE, Northen TR. Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity. Integrative Biology : Quantitative Biosciences From Nano to Macro. 3: 460-7. PMID 21212877 DOI: 10.1039/C0Ib00091D  0.524
2010 Wilmes P, Bowen BP, Thomas BC, Mueller RS, Denef VJ, VerBerkmoes NC, Hettich RL, Northen TR, Banfield JF. Metabolome-proteome differentiation coupled to microbial divergence. Mbio. 1. PMID 20978538 DOI: 10.1128/Mbio.00246-10  0.595
2010 Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Analytical Chemistry. 82: 9034-42. PMID 20945921 DOI: 10.1021/Ac1020112  0.611
2010 Xie X, Yi Z, Bowen B, Wolf C, Flynn CR, Sinha S, Mandarino LJ, Meyer C. Characterization of the Human Adipocyte Proteome and Reproducibility of Protein Abundance by One-Dimensional Gel Electrophoresis and HPLC-ESI-MS/MS. Journal of Proteome Research. 9: 4521-34. PMID 20812759 DOI: 10.1021/Pr100268F  0.323
2010 Lee DY, Bowen BP, Northen TR. Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging. Biotechniques. 49: 557-65. PMID 20701590 DOI: 10.2144/000113451  0.599
2010 Bowen BP, Northen TR. Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American Society For Mass Spectrometry. 21: 1471-6. PMID 20452782 DOI: 10.1016/J.Jasms.2010.04.003  0.621
2009 Woo HK, Go EP, Hoang L, Trauger SA, Bowen B, Siuzdak G, Northen TR. Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 23: 1849-55. PMID 19449318 DOI: 10.1002/Rcm.4076  0.581
2008 Yi Z, Bowen BP, Hwang H, Jenkinson CP, Coletta DK, Lefort N, Bajaj M, Kashyap S, Berria R, De Filippis EA, Mandarino LJ. Global relationship between the proteome and transcriptome of human skeletal muscle. Journal of Proteome Research. 7: 3230-41. PMID 18613714 DOI: 10.1021/Pr800064S  0.302
2008 Højlund K, Yi Z, Hwang H, Bowen B, Lefort N, Flynn CR, Langlais P, Weintraub ST, Mandarino LJ. Characterization of the human skeletal muscle proteome by one-dimensional gel electrophoresis and HPLC-ESI-MS/MS. Molecular & Cellular Proteomics : McP. 7: 257-67. PMID 17911086 DOI: 10.1074/Mcp.M700304-Mcp200  0.301
2004 Bowen BP, Scruggs A, Enderlein J, Sauer M, Woodbury N. Implementation of neural networks for the identification of single molecules Journal of Physical Chemistry A. 108: 4799-4804. DOI: 10.1021/Jp036456V  0.71
2004 Haffa ALM, Lin S, Williams JC, Bowen BP, Taguchi AKW, Allen JP, Woodbury NW. Controlling the pathway of photosynthetic charge separation in bacterial reaction centers Journal of Physical Chemistry B. 108: 4-7. DOI: 10.1021/Jp035904W  0.546
2003 Bowen BP, Woodbury NW. TOTO binding affinity analysis using single-molecule fluorescence spectroscopy. Photochemistry and Photobiology. 78: 582-6. PMID 14743866 DOI: 10.1562/0031-8655(2003)078<0582:Tbaaus>2.0.Co;2  0.543
2003 Bowen BP, Enderlein J, Woodbury NW. Single-molecule fluorescence spectroscopy of TOTO on poly-AT and poly-GC DNA. Photochemistry and Photobiology. 78: 576-81. PMID 14743865 DOI: 10.1562/0031-8655(2003)078<0576:Sfsoto>2.0.Co;2  0.547
2003 Montaño GA, Bowen BP, LaBelle JT, Woodbury NW, Pizziconi VB, Blankenship RE. Characterization of Chlorobium tepidum chlorosomes: a calculation of bacteriochlorophyll c per chlorosome and oligomer modeling. Biophysical Journal. 85: 2560-5. PMID 14507718 DOI: 10.1016/S0006-3495(03)74678-5  0.555
2003 Bowen B, Woodbury N. Single-molecule Fluorescence Lifetime and Anisotropy Measurements of the Red Fluorescent Protein, DsRed, in Solution Photochemistry and Photobiology. 77: 362-369. PMID 12733647 DOI: 10.1562/0031-8655(2003)077<0362:Sflaam>2.0.Co;2  0.539
2001 Montano G, Bowen B, LaBelle J, Woodbury NW, Pizziconi V, Blankenship R. Determination of the number of bacteriochlorophyll molecules per chlorosome light-harvesting complex in Chlorobium tepidum Science Access. 3. DOI: 10.1071/Sa0403377  0.554
Low-probability matches (unlikely to be authored by this person)
2015 Yang J, Rübel O, Prabhat, Mahoney MW, Bowen BP. Identifying important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical Chemistry. 87: 4658-66. PMID 25825055 DOI: 10.1021/Ac5040264  0.291
2009 Lefort N, Yi Z, Bowen B, Glancy B, De Filippis EA, Mapes R, Hwang H, Flynn CR, Willis WT, Civitarese A, Højlund K, Mandarino LJ. Proteome profile of functional mitochondria from human skeletal muscle using one-dimensional gel electrophoresis and HPLC-ESI-MS/MS. Journal of Proteomics. 72: 1046-60. PMID 19567276 DOI: 10.1016/J.Jprot.2009.06.011  0.28
2009 Højlund K, Bowen BP, Hwang H, Flynn CR, Madireddy L, Geetha T, Langlais P, Meyer C, Mandarino LJ, Yi Z. In vivo phosphoproteome of human skeletal muscle revealed by phosphopeptide enrichment and HPLC-ESI-MS/MS. Journal of Proteome Research. 8: 4954-65. PMID 19764811 DOI: 10.1021/Pr9007267  0.266
2003 Bowen BP, Enderlein J, Woodbury NWT. Multiparameter single-molecule fluorescence measurements of DNA intercalating fluorophores Proceedings of Spie - the International Society For Optical Engineering. 4962: 22-26. DOI: 10.1117/12.486348  0.256
2024 Feitosa-Junior OR, Lubbe A, Kosina SM, Martins-Junior J, Barbosa D, Baccari C, Zaini PA, Bowen BP, Northen TR, Lindow SE, da Silva AM. The Exometabolome of in Contact with Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones. Metabolites. 14. PMID 38392974 DOI: 10.3390/metabo14020082  0.254
2017 Xie X, Sinha S, Yi Z, Langlais PR, Madan M, Bowen BP, Willis W, Meyer C. Role of adipocyte mitochondria in inflammation, lipemia and insulin sensitivity in humans: effects of pioglitazone treatment. International Journal of Obesity (2005). PMID 29087390 DOI: 10.1038/Ijo.2017.192  0.238
2010 Hwang H, Bowen BP, Lefort N, Flynn CR, De Filippis EA, Roberts C, Smoke CC, Meyer C, Højlund K, Yi Z, Mandarino LJ. Proteomics analysis of human skeletal muscle reveals novel abnormalities in obesity and type 2 diabetes. Diabetes. 59: 33-42. PMID 19833877 DOI: 10.2337/Db09-0214  0.237
2013 Wattacheril J, Seeley EH, Angel P, Chen H, Bowen BP, Lanciault C, Caprioli RM, Abumrad N, Flynn CR. Lipid MALDI ion images reveal differences in PC zonation across the liver lobule. Plos One. DOI: 10.1371/Journal.Pone.0057165.G004  0.229
2010 Podolnikova NP, Yermolenko IS, Fuhrmann A, Lishko VK, Magonov S, Bowen B, Enderlein J, Podolnikov AV, Ros R, Ugarova TP. Control of integrin alphaIIb beta3 outside-in signaling and platelet adhesion by sensing the physical properties of fibrin(ogen) substrates. Biochemistry. 49: 68-77. PMID 19929007 DOI: 10.1021/Bi9016022  0.227
2013 Wattacheril J, Seeley EH, Angel P, Chen H, Bowen BP, Lanciault C, Caprioli RM, Abumrad N, Flynn CR. Multiple phospholipid distribution patterns in human liver as revealed by MALDI IMS. Plos One. DOI: 10.1371/Journal.Pone.0057165.G003  0.225
2023 Mahood EH, Bennett AA, Komatsu K, Kruse LH, Lau V, Rahmati Ishka M, Jiang Y, Bravo A, Louie K, Bowen BP, Harrison MJ, Provart NJ, Vatamaniuk OK, Moghe GD. Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change. The Plant Journal : For Cell and Molecular Biology. PMID 36880270 DOI: 10.1111/tpj.16160  0.225
2011 Ghosh S, Lertwattanarak R, Lefort N, Molina-Carrion M, Joya-Galeana J, Bowen BP, Garduno-Garcia Jde J, Abdul-Ghani M, Richardson A, DeFronzo RA, Mandarino L, Van Remmen H, Musi N. Reduction in reactive oxygen species production by mitochondria from elderly subjects with normal and impaired glucose tolerance. Diabetes. 60: 2051-60. PMID 21677280 DOI: 10.2337/Db11-0121  0.224
2007 Podolnikova NP, Bowen B, Lishko VK, Podolnikov AV, Ugarova T. Control of Platelet Adhesion by Rigidity Sensing at the Surface of Fibrin Clot. Blood. 110: 3906-3906. DOI: 10.1182/Blood.V110.11.3906.3906  0.222
2010 Sharoff CG, Hussey SE, Garnham A, Yi Z, Bowen B, Mandarino LJ, Hargreaves M. Proteomics Analysis Following Exercise Training in Individuals with T2D Reveals Novel Skeletal Muscle Adaptations Medicine & Science in Sports & Exercise. 42: 16-17. DOI: 10.1249/01.Mss.0000389512.52777.6A  0.221
2009 Brower JB, Targovnik JH, Bowen BP, Caplan MR, Massia SP. Elevated glucose impairs the endothelial cell response to shear stress Cellular and Molecular Bioengineering. 2: 533-543. DOI: 10.1007/S12195-009-0080-8  0.221
2010 Lefort N, Glancy B, Bowen B, Willis WT, Bailowitz Z, De Filippis EA, Brophy C, Meyer C, Højlund K, Yi Z, Mandarino LJ. Increased reactive oxygen species production and lower abundance of complex I subunits and carnitine palmitoyltransferase 1B protein despite normal mitochondrial respiration in insulin-resistant human skeletal muscle. Diabetes. 59: 2444-52. PMID 20682693 DOI: 10.2337/Db10-0174  0.221
2016 Xie X, Yi Z, Sinha S, Madan M, Bowen BP, Langlais P, Ma D, Mandarino L, Meyer C. Proteomics analyses of subcutaneous adipocytes reveal novel abnormalities in human insulin resistance. Obesity (Silver Spring, Md.). 24: 1506-14. PMID 27345962 DOI: 10.1002/Oby.21528  0.217
2015 McLean CS, Mielke C, Cordova JM, Langlais PR, Bowen B, Miranda D, Coletta DK, Mandarino LJ. Gene and MicroRNA Expression Responses to Exercise; Relationship with Insulin Sensitivity. Plos One. 10: e0127089. PMID 25984722 DOI: 10.1371/Journal.Pone.0127089  0.21
2013 Hussey SE, Sharoff CG, Garnham A, Yi Z, Bowen BP, Mandarino LJ, Hargreaves M. Effect of exercise on the skeletal muscle proteome in patients with type 2 diabetes. Medicine and Science in Sports and Exercise. 45: 1069-76. PMID 23274603 DOI: 10.1249/Mss.0B013E3182814917  0.204
2010 Højlund K, Yi Z, Lefort N, Langlais P, Bowen B, Levin K, Beck-Nielsen H, Mandarino LJ. Human ATP synthase beta is phosphorylated at multiple sites and shows abnormal phosphorylation at specific sites in insulin-resistant muscle. Diabetologia. 53: 541-51. PMID 20012595 DOI: 10.1007/S00125-009-1624-0  0.201
2011 Tamboli RA, Hajri T, Jiang A, Marks-Shulman PA, Williams DB, Clements RH, Melvin W, Bowen BP, Shyr Y, Abumrad NN, Flynn CR. Reduction in inflammatory gene expression in skeletal muscle from Roux-en-Y gastric bypass patients randomized to omentectomy. Plos One. 6: e28577. PMID 22194858 DOI: 10.1371/Journal.Pone.0028577  0.199
2010 Lopes LB, Brophy CM, Flynn CR, Yi Z, Bowen BP, Smoke C, Seal B, Panitch A, Komalavilas P. A novel cell permeant peptide inhibitor of MAPKAP kinase II inhibits intimal hyperplasia in a human saphenous vein organ culture model. Journal of Vascular Surgery. 52: 1596-607. PMID 20864298 DOI: 10.1016/J.Jvs.2010.06.168  0.19
2018 Neubauer C, Sessions AL, Booth IR, Bowen BP, Kopf SH, Newman DK, Dalleska NF. Towards measuring growth rates of pathogens during infections by D O-labeling lipidomics. Rapid Communications in Mass Spectrometry : Rcm. PMID 30252972 DOI: 10.1002/Rcm.8288  0.117
2004 Butler PJ, Patterson B, Ferko M, Bowen BP. Time-resolved fluorescence microscopy of stressed membranes of living endothelial cells Conference Record - Asilomar Conference On Signals, Systems and Computers. 2: 1826-1829.  0.102
2015 Yao Y, Bowen BP, Baron D, Poznanski D. SciDB for high-performance array-structured science data at NERSC Computing in Science and Engineering. 17: 44-52. DOI: 10.1109/Mcse.2015.43  0.1
2002 Butler PJ, Bowen BP, Woodbury N. Rapid, multipoint molecular spectroscopic measurements of shear effects on endothelial cell membranes Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 1: 320.  0.075
2002 Butler PJ, Bowen BP, Woodbury N. Spatial mapping of membrane phases in confluent endothelial cells Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 1: 582-583.  0.068
2015 Nath S, Hoover C, Louie K, Bowen BP, Petzold C, Kim J, Northen T, Rubin E, Keasling JD, Hillson NJ, Deutsch S. Construction and characterization of a refactored actinorhodin biosynthetic cluster Synthetic Biology: Engineering, Evolution, and Design Conference 2015, Seed 2015. 2: 886-887.  0.034
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