Joshua D. Larkin, Ph.D. - Publications

Affiliations: 
2009 Biomedical Engineering University of Nevada, Reno, Reno, NV, United States 
Area:
Biomedical Engineering

9/76 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Kolovos P, Georgomanolis T, Koeferle A, Larkin JD, Brant L, Nikolic M, Gusmao EG, Zirkel A, Knoch TA, Costa IG, van Ijcken WF, Cook PR, Grosveld FG, Papantonis A. Binding of nuclear factor kappa B to non-canonical consensus sites reveals its multimodal role during the early inflammatory response. Genome Research. PMID 27633323 DOI: 10.1101/Gr.210005.116  0.32
2015 Larkin JD, Cook PR. Super-resolution measurement of distance between transcription sites using RNA FISH with intronic probes. Methods (San Diego, Calif.). PMID 26564237 DOI: 10.1016/J.Ymeth.2015.11.009  0.4
2013 Larkin JD, Papantonis A, Cook PR. Promoter type influences transcriptional topography by targeting genes to distinct nucleoplasmic sites. Journal of Cell Science. 126: 2052-9. PMID 23444365 DOI: 10.1242/Jcs.123653  0.37
2013 Larkin JD, Papantonis A, Cook PR, Marenduzzo D. Space exploration by the promoter of a long human gene during one transcription cycle. Nucleic Acids Research. 41: 2216-27. PMID 23303786 DOI: 10.1093/Nar/Gks1441  0.376
2012 Papantonis A, Kohro T, Baboo S, Larkin JD, Deng B, Short P, Tsutsumi S, Taylor S, Kanki Y, Kobayashi M, Li G, Poh HM, Ruan X, Aburatani H, Ruan Y, et al. TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed. The Embo Journal. 31: 4404-14. PMID 23103767 DOI: 10.1038/Emboj.2012.288  0.337
2012 Larkin JD, Cook PR. Maximum precision closed-form solution for localizing diffraction-limited spots in noisy images. Optics Express. 20: 18478-93. PMID 23038398 DOI: 10.1364/Oe.20.018478  0.395
2012 Larkin JD, Cook PR, Papantonis A. Dynamic reconfiguration of long human genes during one transcription cycle. Molecular and Cellular Biology. 32: 2738-47. PMID 22586273 DOI: 10.1128/Mcb.00179-12  0.363
2011 Larkin JD, Publicover NG, Sutko JL. Photon event distribution sampling: an image formation technique for scanning microscopes that permits tracking of sub-diffraction particles with high spatial and temporal resolutions. Journal of Microscopy. 241: 54-68. PMID 21118205 DOI: 10.1111/J.1365-2818.2010.03406.X  0.398
2010 Papantonis A, Larkin JD, Wada Y, Ohta Y, Ihara S, Kodama T, Cook PR. Active RNA polymerases: mobile or immobile molecular machines? Plos Biology. 8: e1000419. PMID 20644712 DOI: 10.1371/Journal.Pbio.1000419  0.363
Low-probability matches (unlikely to be authored by this person)
2017 Steinmetz NA, Buetfering C, Lecoq J, Lee CR, Peters AJ, Jacobs EAK, Coen P, Ollerenshaw DR, Valley MT, de Vries SEJ, Garrett M, Zhuang J, Groblewski PA, Manavi S, Miles J, ... ... Larkin JD, et al. Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines. Eneuro. 4. PMID 28932809 DOI: 10.1523/ENEURO.0207-17.2017  0.136
2004 Sherma J, Larkin JD, Larkin FH. Chemiluminescence chromatography detectors Journal of Aoac International. 87. PMID 15084080  0.135
2011 Woodcock HL, Miller BT, Hodoscek M, Okur A, Larkin JD, Ponder JW, Brooks BR. MSCALE: A General Utility for Multiscale Modeling. Journal of Chemical Theory and Computation. 7: 1208-1219. PMID 21691425 DOI: 10.1021/Ct100738H  0.117
2017 Tryon VL, Penner MR, Heide SW, King HO, Larkin J, Mizumori SJ. Hippocampal neural activity reflects the economy of choices during goal-directed navigation. Hippocampus. PMID 28241404 DOI: 10.1002/hipo.22720  0.111
2009 Panchenko YN, Bock CW, Abramenkov AV, Larkin JD. Identification of the high-energy conformer of octa-1,3,5,7-tetraene detected in the one-photon excitation fluorescence spectrum Structural Chemistry. 20: 983-993. DOI: 10.1007/s11224-009-9501-5  0.107
1996 Slater SJ, Ho C, Kelly MB, Larkin JD, Taddeo FI, Yeager MD, Stubbs CD. Protein kinase cot contains two activator sites that bind phorbol ester and diacylglycerol with opposite affinities Faseb Journal. 10.  0.1
2004 Sherma J, Larkin JD, Larkin FH. Atomic fluorescence spectrometry Journal of Aoac International. 87. PMID 15675435  0.1
1996 Slater SJ, Ho C, Kelly MB, Larkin JD, Taddeo FJ, Yeager MD, Stubbs CD. Protein kinase Calpha contains two activator binding sites that bind phorbol esters and diacylglycerols with opposite affinities. The Journal of Biological Chemistry. 271: 4627-31. PMID 8617724 DOI: 10.1074/jbc.271.9.4627  0.099
2003 Sherma J, Larkin JD, Larkin FH. Miniature spectrometers Journal of Aoac International. 86. PMID 12852556  0.098
1995 Slater SJ, Kelly MB, Taddeo FJ, Larkin JD, Yeager MD, McLane JA, Ho C, Stubbs CD. Direct activation of protein kinase C by 1 alpha,25-dihydroxyvitamin D3. The Journal of Biological Chemistry. 270: 6639-43. PMID 7896803 DOI: 10.1074/jbc.270.12.6639  0.087
2008 Panchenko YN, Bock CW, Larkin JD, Abramenkov AV. Predictive abilities of scaled quantum mechanical molecular force fields: Application to 2,3-dimethylbuta-1,3-diene Structural Chemistry. 19: 793-799. DOI: 10.1007/s11224-008-9366-z  0.086
2008 Panchenko YN, Bock CW, Larkin JD, Abramenkov AV, Kühnemann F. Predictive abilities of scaled quantum-mechanical molecular force fields: Application to 2-methylbuta-1,3-diene (isoprene) Structural Chemistry. 19: 421-428. DOI: 10.1007/s11224-008-9297-8  0.083
2005 Sherma J, Larkin JD, Larkin FH. Raman spectrometers and microscopes Journal of Aoac International. 88. PMID 15859059  0.076
1996 Yeager MD, Larkin JD, Taddeo FJ, Stubbs CD. Functional expression of the via vasopressin receptor in sf9 insect cells Faseb Journal. 10.  0.075
2011 Panchenko YN, Bock CW, Larkin JD, Abramenkov AV, De Maré GR, Banaru AM. Infrared spectral identification of the high-energy conformer of gauche,Trans,trans,Trans,gauche-octa-1,3,5,7-tetraene Russian Journal of Physical Chemistry A. 85: 2156-2164. DOI: 10.1134/S0036024411120259  0.074
1997 Slater SJ, Kelly MB, Larkin JD, Ho C, Mazurek A, Taddeo FJ, Yeager MD, Stubbs CD. Interaction of alcohols and anesthetics with protein kinase Calpha. The Journal of Biological Chemistry. 272: 6167-73. PMID 9045629 DOI: 10.1074/Jbc.272.10.6167  0.071
2006 Larkin JD, Bhat KL, Markham GD, Brooks BR, Schaefer HF, Bock CW. Structure of the boronic acid dimer and the relative stabilities of its conformers. The Journal of Physical Chemistry. A. 110: 10633-42. PMID 16956246 DOI: 10.1021/jp062407h  0.071
2012 Tao P, Hodoš?ek M, Larkin JD, Shao Y, Brooks BR. Comparison of Three Chain-of-States Methods: Nudged Elastic Band and Replica Path with Restraints or Constraints. Journal of Chemical Theory and Computation. 8: 5035-5051. PMID 23526888 DOI: 10.1021/Ct3006248  0.068
2003 Larkin JD, Moran D, Schaefer HF. Molecular structures and energetics of the neutral aluminum-trimethylaluminum complex: An Al-Al bonded global minimum? Chemical Physics Letters. 378: 65-70. DOI: 10.1016/S0009-2614(03)01185-0  0.063
1989 Shields MA, Larkin JD. Gender and class year differences in undergraduate computing experiences and attitudes American Society of Mechanical Engineers, Technology and Society Division (Publication) Ts. 2: 301-306.  0.062
2003 Profeta LTM, Larkin JD, Schaefer HF. The thymine radicals and their respective anions: Molecular structures and electron affinities Molecular Physics. 101: 3277-3284. DOI: 10.1080/00268970310001624993  0.059
2001 Bhat KL, Francis BA, Larkin JD, Trachtman M, Bock CW. Conformational Analyses of Glycinal and Alaninal: A Computational Study Structural Chemistry. 12: 45-58. DOI: 10.1023/A:1009210101883  0.056
2017 Jenni NL, Larkin JD, Floresco SB. Prefrontal dopamine D1 and D2 receptors regulate dissociable aspects of decision-making via distinct ventral striatal and amygdalar circuits. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 28546312 DOI: 10.1523/JNEUROSCI.0030-17.2017  0.054
2003 Larkin JD. Walk a mile... [2] Aba Journal. 89: 10.  0.052
1967 Larkin JD. Means for measuring the interocclusal distance The Journal of Prosthetic Dentistry. 17: 247-250. PMID 5226414  0.051
2015 Rao NZ, Larkin JD, Bock CW. A computational investigation of monosubstituted boroxines(RH2B3O3): structure and formation Structural Chemistry. DOI: 10.1007/S11224-015-0577-9  0.051
2004 Sherma J, Larkin JD, Larkin FH. Inductively coupled plasma-optical emission spectrometry and -mass spectrometry Journal of Aoac International. 87. PMID 15164824  0.047
2004 Larkin JD, Schaefer HF. The ability of silylenes to bind excess electrons: electron affinities of SiX(2), and SiXY species (X,Y=H,CH(3),SiH(3),F,Cl,Br). The Journal of Chemical Physics. 121: 9361-7. PMID 15538855 DOI: 10.1063/1.1790951  0.047
1967 Larkin JD. What do you mean commercial?.. Texas Dental Journal. 85: 9. PMID 5227993  0.046
2011 Bhat KL, Markham GD, Larkin JD, Bock CW. Thermodynamics of boroxine formation from the aliphatic boronic acid monomers R-B(OH)2 (R = H, H3C, H2N, HO, and F): a computational investigation. The Journal of Physical Chemistry. A. 115: 7785-93. PMID 21650154 DOI: 10.1021/jp202409m  0.046
2006 Sherma J, Larkin JD, Larkin FH. The corona charged aerosol detector for liquid chromatography and high field asymmetric waveform ion mobility spectrometry combined with liquid chromatography/mass spectrometry and gas chromatography Journal of Aoac International.. 89. PMID 16512220  0.046
2007 Larkin JD, Bhat KL, Markham GD, Brooks BR, Lai JH, Bock CW. A computational investigation of the geometrical structure and protodeboronation of boroglycine, H2N-CH2-B(OH)2. The Journal of Physical Chemistry. A. 111: 6489-500. PMID 17595064 DOI: 10.1021/Jp0700682  0.043
2006 Owens ZT, Larkin JD, Schaefer HF. Hydrogen bridging in the compounds X2H (X=Al,Si,P,S). The Journal of Chemical Physics. 125: 164322. PMID 17092088 DOI: 10.1063/1.2363375  0.042
2006 Sherma J, Larkin JD, Larkin FH. Titration instruments Journal of Aoac International. 89. PMID 17225588  0.041
2003 Sherma J, Larkin JD, Larkin FH. Dedicated analyzers: Part 2 Journal of Aoac International. 86. PMID 14632385  0.038
2003 Sherma J, Larkin JD, Larkin FH. Dedicated analyzers: part 1 Journal of Aoac International. 86. PMID 14509416  0.038
2001 Feitelson MA, Larkin JD. New animal models of hepatitis B and C Ilar Journal. 42: 127-138. PMID 11406715  0.038
2008 Sherma J, Larkin JD, Larkin FH. Capillary electrophoresis instruments Journal of Aoac International. 91. PMID 19202782  0.037
2010 Larkin JD, Frimat KA, Fyles TM, Flower SE, James TD. Boronic acid based photoinduced electron transfer (PET) fluorescence sensors for saccharides New Journal of Chemistry. 34: 2922-2931. DOI: 10.1039/C0Nj00578A  0.036
2012 Bock CW, Larkin JD. Heats of Formation for the Boronic Acids R-B(OH)2 and Boroxines R3B3O3 (R=H, Li, HBe, H2B, H3C, H2N, HO, F, and Cl) Calculated at the G2, G3, and G4 Levels of Theory. Computational & Theoretical Chemistry. 986: 35-42. PMID 24653975 DOI: 10.1016/j.comptc.2012.02.007  0.032
2010 Larkin JD, Fossey JS, James TD, Brooks BR, Bock CW. A computational investigation of the nitrogen-boron interaction in o-(N,N-dialkylaminomethyl)arylboronate systems. The Journal of Physical Chemistry. A. 114: 12531-9. PMID 21050022 DOI: 10.1021/Jp1087674  0.031
2009 Larkin JD, Markham GD, Milkevitch M, Brooks BR, Bock CW. Computational investigation of the oxidative deboronation of boroglycine, H2N-CH2-B(OH)2, Using H2O and H2O2. The Journal of Physical Chemistry. A. 113: 11028-34. PMID 19810757 DOI: 10.1021/Jp904149W  0.031
1972 Larkin JD. White collars enable blues [5] Chemical and Engineering News. 50: 50.  0.03
2009 Bock CW, Larkin JD, Hirsch SS, Wright JB. Nucleophilic destruction of organophosphate toxins: A computational investigation Journal of Molecular Structure: Theochem. 915: 11-19. DOI: 10.1016/j.theochem.2009.07.048  0.03
1966 Larkin JD. Physician , heal thyself.. Texas Dental Journal. 83. PMID 4162725  0.029
2004 Feitelson MA, Larkin JD, Schinazi RF. Hepatitis B virus transgenic severe combined immunodeficient mouse model of acute and chronic liver disease Methods in Molecular Medicine. 96: 269-287. PMID 14762277  0.025
2015 Larkin JD, Jenni NL, Floresco SB. Modulation of risk/reward decision making by dopaminergic transmission within the basolateral amygdala. Psychopharmacology. PMID 26432096 DOI: 10.1007/s00213-015-4094-8  0.025
1973 Larkin JD. Tooth supported complete dentures: twenty-seventh year of observation Texas Dental Journal. 91: 26-30. PMID 4519569  0.025
2008 Larkin JD, Bhat KL, Markham GD, James TD, Brooks BR, Bock CW. A computational characterization of boron-oxygen multiple bonding in HN=CH-CH=CH-NH-BO. The Journal of Physical Chemistry. A. 112: 8446-54. PMID 18707068 DOI: 10.1021/Jp800125P  0.023
1965 Larkin JD. For better or worse? Texas Dental Journal. 83: 16-17. PMID 5214166  0.023
1973 Morrow RM, Rudd KD, Birmingham FD, Larkin JD. Immediate interim tooth-supported complete dentures The Journal of Prosthetic Dentistry. 30: 695-700. PMID 4517897  0.022
1971 Larkin JD. Tooth contacts in denture occlusion: centric and eccentric Dental Clinics of North America. 15: 861-874. PMID 5286182  0.021
2004 Sherma J, Larkin JD, Larkin FH. Fourier transform infrared (FT-IR) spectrometry Journal of Aoac International. 87. PMID 15295871  0.019
1967 Larkin JD. Where are we being carried? Texas Dental Journal. 85: 9. PMID 5227989  0.018
1973 Morrow RM, Brown CE, Larkin JD, Bernui R, Rudd KD. Evaluation of methods for polishing porcelain denture teeth. The Journal of Prosthetic Dentistry. 30: 222-6. PMID 4515674  0.017
1965 Larkin JD. Have we slept too late? Texas Dental Journal. 83: 12. PMID 5214538  0.014
2009 Sherma J, Larkin JD, Larkin FH. New column liquid and gas chromatography instruments Journal of Aoac International. 92. PMID 20166575  0.013
1994 Larkin JD. The Canal Era: A Study of the Original Erie and Welland Canals within the Niagara Borderland American Review of Canadian Studies. 24: 299-314. DOI: 10.1080/02722019409481769  0.012
2003 Sherma J, Larkin JD, Larkin FH. Amino acid analyzers Journal of Aoac International. 86. PMID 14979688  0.011
2015 Rao NZ, Larkin JD, Bock CW. A comparison of the structure and bonding in the aliphatic boronic R–B(OH)2 and borinic R–BH(OH) acids (R=H; NH2, OH, and F): a computational investigation Structural Chemistry. 1-11. DOI: 10.1007/s11224-015-0730-5  0.01
2011 Ghysels A, Woodcock HL, Larkin JD, Miller BT, Shao Y, Kong J, Neck DV, Speybroeck VV, Waroquier M, Brooks BR. Efficient calculation of QM/MM frequencies with the mobile Block Hessian Journal of Chemical Theory and Computation. 7: 496-514. DOI: 10.1021/ct100473f  0.01
2009 Sherma J, Larkin JD, Larkin FH. Ion mobility spectrometry (IMS) and IMS/MS Journal of Aoac International. 92. PMID 19916361  0.01
2005 Sherma J, Larkin JD, Larkin FH. Thin-layer chromatography densitometers: an update Journal of Aoac International. 88. PMID 16152912  0.01
1967 Larkin JD. The power of communications Texas Dental Journal. 85: 18-19. PMID 5230841  0.01
1967 Larkin JD, Jackson EP. Pin and sleeve occlusal resistor Texas Dental Journal. 85: 4-8. PMID 5227992  0.01
1966 Larkin JD. Same old quicksand Texas Dental Journal. 84: 16-17. PMID 5216952  0.01
1937 Larkin JD. The trade agreement act in court and in congress American Political Science Review. 31: 498-507. DOI: 10.2307/1948168  0.01
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