Matthew A. Wyczalkowski, Ph.D. - Publications

Affiliations: 
2009 Biomedical Engineering Washington University, Saint Louis, St. Louis, MO 
Area:
General Biophysics, Condensed Matter Physics

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Huang KL, Li S, Mertins P, Cao S, Gunawardena HP, Ruggles KV, Mani DR, Clauser KR, Tanioka M, Usary J, Kavuri SM, Xie L, Yoon C, Qiao JW, Wrobel J, ... Wyczalkowski MA, et al. Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts. Nature Communications. 8: 15479. PMID 28440318 DOI: 10.1038/ncomms15479  0.6
2017 Huang KL, Li S, Mertins P, Cao S, Gunawardena HP, Ruggles KV, Mani DR, Clauser KR, Tanioka M, Usary J, Kavuri SM, Xie L, Yoon C, Qiao JW, Wrobel J, ... Wyczalkowski MA, et al. Proteogenomic integration reveals therapeutic targets in breast cancer xenografts. Nature Communications. 8: 14864. PMID 28348404 DOI: 10.1038/ncomms14864  0.6
2016 Niu B, Scott AD, Sengupta S, Bailey MH, Batra P, Ning J, Wyczalkowski MA, Liang WW, Zhang Q, McLellan MD, Sun SQ, Tripathi P, Lou C, Ye K, Mashl RJ, et al. Protein-structure-guided discovery of functional mutations across 19 cancer types. Nature Genetics. PMID 27294619 DOI: 10.1038/ng.3586  0.64
2015 Lu C, Xie M, Wendl MC, Wang J, McLellan MD, Leiserson MD, Huang KL, Wyczalkowski MA, Jayasinghe R, Banerjee T, Ning J, Tripathi P, Zhang Q, Niu B, Ye K, et al. Patterns and functional implications of rare germline variants across 12 cancer types. Nature Communications. 6: 10086. PMID 26689913 DOI: 10.1038/ncomms10086  0.64
2015 Lu C, Zhang J, Nagahawatte P, Easton J, Lee S, Liu Z, Ding L, Wyczalkowski MA, Valentine M, Navid F, Mulder H, Tatevossian RG, Dalton J, Davenport J, Yin Z, et al. The genomic landscape of childhood and adolescent melanoma. The Journal of Investigative Dermatology. 135: 816-23. PMID 25268584 DOI: 10.1038/jid.2014.425  0.64
2014 Boyle JJ, Kume M, Wyczalkowski MA, Taber LA, Pless RB, Xia Y, Genin GM, Thomopoulos S. Simple and accurate methods for quantifying deformation, disruption, and development in biological tissues. Journal of the Royal Society, Interface / the Royal Society. 11: 20140685. PMID 25165601 DOI: 10.1098/rsif.2014.0685  0.64
2014 Kanchi KL, Johnson KJ, Lu C, McLellan MD, Leiserson MD, Wendl MC, Zhang Q, Koboldt DC, Xie M, Kandoth C, McMichael JF, Wyczalkowski MA, Larson DE, Schmidt HK, Miller CA, et al. Integrated analysis of germline and somatic variants in ovarian cancer. Nature Communications. 5: 3156. PMID 24448499 DOI: 10.1038/ncomms4156  0.64
2013 Kandoth C, McLellan MD, Vandin F, Ye K, Niu B, Lu C, Xie M, Zhang Q, McMichael JF, Wyczalkowski MA, Leiserson MD, Miller CA, Welch JS, Walter MJ, Wendl MC, et al. Mutational landscape and significance across 12 major cancer types. Nature. 502: 333-9. PMID 24132290 DOI: 10.1038/nature12634  0.64
2013 Wyczalkowski MA, Varner VD, Taber LA. Computational and experimental study of the mechanics of embryonic wound healing. Journal of the Mechanical Behavior of Biomedical Materials. 28: 125-46. PMID 23973771 DOI: 10.1016/j.jmbbm.2013.07.018  0.64
2012 Wyczalkowski MA, Chen Z, Filas BA, Varner VD, Taber LA. Computational models for mechanics of morphogenesis. Birth Defects Research. Part C, Embryo Today : Reviews. 96: 132-52. PMID 22692887 DOI: 10.1002/bdrc.21013  0.64
2010 Wyczalkowski MA, Vitalis A, Pappu RV. New estimators for calculating solvation entropy and enthalpy and comparative assessments of their accuracy and precision. The Journal of Physical Chemistry. B. 114: 8166-80. PMID 20503993 DOI: 10.1021/jp103050u  0.64
2010 Fuentes A, Wyczalkowski MA, MacKinnon KC. Niche construction through cooperation: A nonlinear dynamics contribution to modeling facets of the evolutionary history in the genus homo Current Anthropology. 51: 435-444. DOI: 10.1086/651221  0.64
2008 Wyczalkowski MA, Pappu RV. Satisfying the fluctuation theorem in free-energy calculations with Hamiltonian replica exchange. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 026104. PMID 18352087 DOI: 10.1103/PhysRevE.77.026104  0.64
2008 Wyczalkowski MA, Pappu RV. Publisher's Note: Satisfying the fluctuation theorem in free-energy calculations with Hamiltonian replica exchange (Physical Review e (2008) 77 (026104)) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 77. DOI: 10.1103/PhysRevE.77.029905  0.64
2006 Wang X, Vitalis A, Wyczalkowski MA, Pappu RV. Characterizing the conformational ensemble of monomeric polyglutamine. Proteins. 63: 297-311. PMID 16299774 DOI: 10.1002/prot.20761  0.64
Show low-probability matches.