Eberhard O. Voit - Publications

Interdisciplinary Bioengineering Georgia Institute of Technology, Atlanta, GA 
Biomedical Engineering, Botany Biology, Applied Mathematics

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Year Citation  Score
2019 Olivença DV, Fonseca LL, Voit EO, Pinto FR. Thickness of the airway surface liquid layer in the lung is affected in cystic fibrosis by compromised synergistic regulation of the ENaC ion channel. Journal of the Royal Society, Interface. 16: 20190187. PMID 31455163 DOI: 10.1098/rsif.2019.0187  1
2018 Downs DM, Bazurto JV, Gupta A, Fonseca LL, Voit EO. The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling. Aims Microbiology. 4: 289-303. PMID 31294216 DOI: 10.3934/microbiol.2018.2.289  1
2018 Fonseca LL, Joyner CJ, Saney CL, Moreno A, Barnwell JW, Galinski MR, Voit EO. Analysis of erythrocyte dynamics in Rhesus macaque monkeys during infection with Plasmodium cynomolgi. Malaria Journal. 17: 410. PMID 30400896 DOI: 10.1186/s12936-018-2560-6  1
2018 Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle NL, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO. A dynamic model of lignin biosynthesis in . Biotechnology For Biofuels. 11: 253. PMID 30250505 DOI: 10.1186/s13068-018-1241-6  1
2018 Olivença DV, Uliyakina I, Fonseca LL, Amaral MD, Voit EO, Pinto FR. A Mathematical Model of the Phosphoinositide Pathway. Scientific Reports. 8: 3904. PMID 29500467 DOI: 10.1038/s41598-018-22226-8  1
2018 Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle N, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO. Mathematical models of lignin biosynthesis. Biotechnology For Biofuels. 11: 34. PMID 29449882 DOI: 10.1186/s13068-018-1028-9  1
2017 Tang Y, Gupta A, Garimalla S, Galinski MR, Styczynski MP, Fonseca LL, Voit EO. Metabolic modeling helps interpret Transcriptomic changes during malaria. Biochimica Et Biophysica Acta. PMID 29069611 DOI: 10.1016/j.bbadis.2017.10.023  1
2017 Fonseca LL, Joyner CJ, Galinski MR, Voit EO. A model of Plasmodium vivax concealment based on Plasmodium cynomolgi infections in Macaca mulatta. Malaria Journal. 16: 375. PMID 28923058 DOI: 10.1186/s12936-017-2008-4  1
2017 Qi Z, Roback JD, Voit EO. Effects of Storage Time on Glycolysis in Donated Human Blood Units. Metabolites. 7. PMID 28353627 DOI: 10.3390/metabo7020012  0.6
2017 Faraji M, Voit EO. Stepwise Inference of Likely Dynamic Flux Distributions from Metabolic Time Series Data. Bioinformatics (Oxford, England). PMID 28334199 DOI: 10.1093/bioinformatics/btx126  0.4
2017 Qi Z, Voit EO. Inference of cancer mechanisms through computational systems analysis. Molecular Biosystems. PMID 28112324 DOI: 10.1039/c6mb00672h  0.6
2016 Dam P, Fonseca LL, Konstantinidis KT, Voit EO. Dynamic models of the complex microbial metapopulation of lake mendota. Npj Systems Biology and Applications. 2: 16007. PMID 28725469 DOI: 10.1038/npjsba.2016.7  1
2016 Faraji M, Voit EO. Nonparametric dynamic modeling. Mathematical Biosciences. PMID 27590775 DOI: 10.1016/j.mbs.2016.08.004  0.4
2016 Fonseca LL, Alezi HS, Moreno A, Barnwell JW, Galinski MR, Voit EO. Quantifying the removal of red blood cells in Macaca mulatta during a Plasmodium coatneyi infection. Malaria Journal. 15: 410. PMID 27520455 DOI: 10.1186/s12936-016-1465-5  1
2016 Qi Z, Voit E. Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27392364 DOI: 10.1109/TCBB.2016.2586065  0.6
2016 Qi Z, Yu GP, Tretter F, Pogarell O, Grace AA, Voit EO. A heuristic model for working memory deficit in schizophrenia. Biochimica Et Biophysica Acta. PMID 27177811 DOI: 10.1016/j.bbagen.2016.04.031  0.6
2016 Dolatshahi S, Voit EO. Identification of Metabolic Pathway Systems. Frontiers in Genetics. 7: 6. PMID 26904095 DOI: 10.3389/fgene.2016.00006  1
2016 Chen PW, Fonseca LL, Hannun YA, Voit EO. Analysis of the Involvement of Different Ceramide Variants in the Response to Hydroxyurea Stress in Baker's Yeast. Plos One. 11: e0146839. PMID 26784947 DOI: 10.1371/journal.pone.0146839  1
2016 Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model. Molecular Biosystems. 12: 23-36. PMID 26609637 DOI: 10.1039/c5mb00331h  1
2015 Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. II. Inference of the precisely timed control system regulating glycolysis. Molecular Biosystems. 12: 37-47. PMID 26609780 DOI: 10.1039/c5mb00726g  1
2015 Gutierrez JB, Galinski MR, Cantrell S, Voit EO. From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges. Mathematical Biosciences. PMID 26474512 DOI: 10.1016/j.mbs.2015.10.002  1
2015 Faraji M, Fonseca LL, Escamilla-Treviño L, Dixon RA, Voit EO. Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum. Biotechnology For Biofuels. 8: 151. PMID 26388938 DOI: 10.1186/s13068-015-0334-8  1
2015 Fonseca LL, Voit EO. Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria infection. Mathematical Biosciences. 270: 224-36. PMID 26362230 DOI: 10.1016/j.mbs.2015.08.020  1
2015 Chen PW, Fonseca LL, Hannun YA, Voit EO. Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast. Plos Computational Biology. 11: e1004373. PMID 26241868 DOI: 10.1371/journal.pcbi.1004373  1
2015 Gutierrez JB, Galinski MR, Cantrell S, Voit EO. From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges. Mathematical Biosciences. PMID 25890102 DOI: 10.1016/j.mbs.2015.04.004  1
2015 Voit EO, Martens HA, Omholt SW. 150 years of the mass action law. Plos Computational Biology. 11: e1004012. PMID 25569257 DOI: 10.1371/journal.pcbi.1004012  1
2014 Qi Z, Voit EO. Identification of cancer mechanisms through computational systems modeling. Translational Cancer Research. 3: 233-242. PMID 26662197 DOI: 10.3978/j.issn.2218-676X.2014.05.03  1
2014 Sriyudthsak K, Sawada Y, Chiba Y, Yamashita Y, Kanaya S, Onouchi H, Fujiwara T, Naito S, Voit EO, Shiraishi F, Hirai MY. A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. Bmc Systems Biology. 8: S4. PMID 25559748 DOI: 10.1186/1752-0509-8-S5-S4  1
2014 Qi Z, Tretter F, Voit EO. A heuristic model of alcohol dependence. Plos One. 9: e92221. PMID 24658530 DOI: 10.1371/journal.pone.0092221  1
2014 Qi Z, Miller GW, Voit EO. Rotenone and paraquat perturb dopamine metabolism: A computational analysis of pesticide toxicity. Toxicology. 315: 92-101. PMID 24269752 DOI: 10.1016/j.tox.2013.11.003  1
2014 Voit EO. Mesoscopic modeling as a starting point for computational analyses of cystic fibrosis as a systemic disease. Biochimica Et Biophysica Acta. 1844: 258-70. PMID 23570976 DOI: 10.1016/j.bbapap.2013.03.023  1
2014 Adouani N, Limousy L, Lendormi T, Voit EO, Sire O. Simulation of the denitrification process of waste water with a biochemical systems model: A non-conventional approach International Journal of Chemical Reactor Engineering. 12: 683-693. DOI: 10.1515/ijcre-2014-0050  1
2014 Shiraishi F, Yoshida E, Voit EO. An efficient and very accurate method for calculating steady-state sensitivities in metabolic reaction systems Ieee/Acm Transactions On Computational Biology and Bioinformatics. 11: 1077-1086. DOI: 10.1109/TCBB.2014.2338311  1
2014 Dolatshahi S, Vidakovic B, Voit EO. A constrained wavelet smoother for pathway identification tasks in systems biology Computers and Chemical Engineering. 71: 728-733. DOI: 10.1016/j.compchemeng.2014.07.019  1
2013 Carvalho AL, Turner DL, Fonseca LL, Solopova A, Catarino T, Kuipers OP, Voit EO, Neves AR, Santos H. Metabolic and transcriptional analysis of acid stress in Lactococcus lactis, with a focus on the kinetics of lactic acid pools. Plos One. 8: e68470. PMID 23844205 DOI: 10.1371/journal.pone.0068470  1
2013 Chen PW, Fonseca LL, Hannun YA, Voit EO. Coordination of rapid sphingolipid responses to heat stress in yeast. Plos Computational Biology. 9: e1003078. PMID 23737740 DOI: 10.1371/journal.pcbi.1003078  1
2013 Qi Z, Fieni D, Tretter F, Voit EO. The neurochemical mobile with non-linear interaction matrix: an exploratory computational model Pharmacopsychiatry. 46. PMID 23599246 DOI: 10.1055/s-0033-1337920  0.6
2013 Yin W, Voit EO. Function and design of the Nox1 system in vascular smooth muscle cells. Bmc Systems Biology. 7: 20. PMID 23497394 DOI: 10.1186/1752-0509-7-20  1
2013 Voit EO. Characterizability of metabolic pathway systems from time series data. Mathematical Biosciences. 246: 315-25. PMID 23391489 DOI: 10.1016/j.mbs.2013.01.008  1
2013 Kikuchi S, Voit EO. Regulatory crosstalk analysis of biochemical networks in the hippocampus and nucleus accumbens Systems Biology: Integrative Biology and Simulation Tools. 95-127. DOI: 10.1007/978-94-007-6803-1_4  1
2012 Fonseca LL, Chen PW, Voit EO. Canonical modeling of the multi-scale regulation of the heat stress response in yeast. Metabolites. 2: 221-41. PMID 24957376 DOI: 10.3390/metabo2010221  1
2012 Lee Y, Escamilla-Treviño L, Dixon RA, Voit EO. Functional analysis of metabolic channeling and regulation in lignin biosynthesis: a computational approach. Plos Computational Biology. 8: e1002769. PMID 23144605 DOI: 10.1371/journal.pcbi.1002769  1
2012 Voit EO, Newstetter WC, Kemp ML. A feel for systems. Molecular Systems Biology. 8: 609. PMID 22968443 DOI: 10.1038/msb.2012.41  1
2012 Chou IC, Voit EO. Estimation of dynamic flux profiles from metabolic time series data. Bmc Systems Biology. 6: 84. PMID 22776140 DOI: 10.1186/1752-0509-6-84  1
2012 Voit EO, Qi Z, Qui Z, Kikuchi S. Mesoscopic models of neurotransmission as intermediates between disease simulators and tools for discovering design principles. Pharmacopsychiatry. 45: S22-30. PMID 22565231 DOI: 10.1055/s-0032-1304653  1
2012 Qi Z, Miller GW, Voit EO. Mathematical models of dopamine metabolism in parkinson’s disease Systems Biology of Parkinson's Disease. 151-171. DOI: 10.1007/978-1-4614-3411-5_8  0.6
2011 Alvarez-Vasquez F, Riezman H, Hannun YA, Voit EO. Mathematical modeling and validation of the ergosterol pathway in Saccharomyces cerevisiae. Plos One. 6: e28344. PMID 22194828 DOI: 10.1371/journal.pone.0028344  1
2011 Wu J, Vidakovic B, Voit EO. Constructing stochastic models from deterministic process equations by propensity adjustment. Bmc Systems Biology. 5: 187. PMID 22067083 DOI: 10.1186/1752-0509-5-187  1
2011 Wu J, Qi Z, Voit EO. Impact of delays and noise on dopamine signal transduction. Studies in Health Technology and Informatics. 162: 222-35. PMID 21685574  0.64
2011 Lee Y, Chen F, Gallego-Giraldo L, Dixon RA, Voit EO. Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis. Plos Computational Biology. 7: e1002047. PMID 21625579 DOI: 10.1371/journal.pcbi.1002047  1
2011 Qi Z, Kikuchi S, Tretter F, Voit EO. Effects of dopamine and glutamate on synaptic plasticity: A computational modeling approach for drug abuse as comorbidity in mood disorders Pharmacopsychiatry. 44. PMID 21544747 DOI: 10.1055/s-0031-1273707  1
2011 Ndukum J, Fonseca LL, Santos H, Voit EO, Datta S. Statistical inference methods for sparse biological time series data. Bmc Systems Biology. 5: 57. PMID 21518445 DOI: 10.1186/1752-0509-5-57  1
2011 Lee Y, Chen PW, Voit EO. Analysis of operating principles with S-system models. Mathematical Biosciences. 231: 49-60. PMID 21377479 DOI: 10.1016/j.mbs.2011.03.001  1
2011 Marin-Sanguino A, Gupta SK, Voit EO, Vera J. Biochemical pathway modeling tools for drug target detection in cancer and other complex diseases. Methods in Enzymology. 487: 319-69. PMID 21187230 DOI: 10.1016/B978-0-12-381270-4.00011-1  1
2011 Fonseca LL, Sánchez C, Santos H, Voit EO. Complex coordination of multi-scale cellular responses to environmental stress. Molecular Biosystems. 7: 731-41. PMID 21088798 DOI: 10.1039/c0mb00102c  1
2011 Voit EO, Kemp ML. So, you want to be a systems biologist? Determinants for creating graduate curricula in systems biology Iet Systems Biology. 5: 70-79. DOI: 10.1049/iet-syb.2009.0071  1
2011 Voit EO. What if the Fit is Unfit? Criteria for Biological Systems Estimation beyond Residual Errors Applied Statistics For Network Biology: Methods in Systems Biology. 1: 181-200. DOI: 10.1002/9783527638079.ch9  1
2010 Wu J, Qi Z, Voit EO. Impact of delays and noise on dopamine signal transduction. In Silico Biology. 10: 67-80. PMID 22430222 DOI: 10.3233/ISB-2010-0413  1
2010 Voit EO, Alvarez-Vasquez F, Hannun YA. Computational analysis of sphingolipid pathway systems. Advances in Experimental Medicine and Biology. 688: 264-75. PMID 20919661 DOI: 10.1007/978-1-4419-6741-1_19  1
2010 Lee Y, Voit EO. Mathematical modeling of monolignol biosynthesis in Populus xylem. Mathematical Biosciences. 228: 78-89. PMID 20816867 DOI: 10.1016/j.mbs.2010.08.009  1
2010 Dress A, Mendoza E, Voit EO. Advanced methods in molecular systems biology. Journal of Biotechnology. 149: 95-7. PMID 20561954 DOI: 10.1016/j.jbiotec.2010.05.010  1
2010 Qi Z, Miller GW, Voit EO. Computational modeling of synaptic neurotransmission as a tool for assessing dopamine hypotheses of schizophrenia. Pharmacopsychiatry. 43: S50-60. PMID 20486051 DOI: 10.1055/s-0030-1248317  1
2010 Qi Z, Miller GW, Voit EO. The internal state of medium spiny neurons varies in response to different input signals. Bmc Systems Biology. 4: 26. PMID 20236543 DOI: 10.1186/1752-0509-4-26  1
2010 Machina A, Ponosov A, Voit EO. Automated piecewise power-law modeling of biological systems. Journal of Biotechnology. 149: 154-65. PMID 20060428 DOI: 10.1016/j.jbiotec.2009.12.016  1
2010 Marin-Sanguino A, Mendoza ER, Voit EO. Flux duality in nonlinear GMA systems: implications for metabolic engineering. Journal of Biotechnology. 149: 166-72. PMID 20015458 DOI: 10.1016/j.jbiotec.2009.12.009  1
2010 Yin W, Jo H, Voit EO. Systems analysis of the role of bone morphogenic protein 4 in endothelial inflammation. Annals of Biomedical Engineering. 38: 291-307. PMID 19851868 DOI: 10.1007/s10439-009-9822-y  1
2009 Voit EO, Goel G, Chou IC, Fonseca LL. Estimation of metabolic pathway systems from different data sources. Iet Systems Biology. 3: 513-22. PMID 19947777 DOI: 10.1049/iet-syb.2008.0180  1
2009 Qi Z, Miller GW, Voit EO. Computational analysis of determinants of dopamine (DA) dysfunction in DA nerve terminals. Synapse (New York, N.Y.). 63: 1133-42. PMID 19670315 DOI: 10.1002/syn.20686  1
2009 Ko CL, Voit EO, Wang FS. Estimating parameters for generalized mass action models with connectivity information. Bmc Bioinformatics. 10: 140. PMID 19432964 DOI: 10.1186/1471-2105-10-140  1
2009 Vilela M, Vinga S, Maia MA, Voit EO, Almeida JS. Identification of neutral biochemical network models from time series data. Bmc Systems Biology. 3: 47. PMID 19416537 DOI: 10.1186/1752-0509-3-47  1
2009 Chou IC, Voit EO. Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Mathematical Biosciences. 219: 57-83. PMID 19327372 DOI: 10.1016/j.mbs.2009.03.002  1
2009 Voit EO. A systems-theoretical framework for health and disease: inflammation and preconditioning from an abstract modeling point of view. Mathematical Biosciences. 217: 11-8. PMID 18851981 DOI: 10.1016/j.mbs.2008.09.005  1
2009 Vodovotz Y, Constantine G, Rubin J, Csete M, Voit EO, An G. Mechanistic simulations of inflammation: current state and future prospects. Mathematical Biosciences. 217: 1-10. PMID 18835282 DOI: 10.1016/j.mbs.2008.07.013  1
2008 Alvarez-Vasquez F, Hannun YA, Voit EO. Dynamics of Positional Enrichment: Theoretical Development and Application to Carbon Labeling in Zymomonas mobilis. Biochemical Engineering Journal. 40: 157-174. PMID 19412323 DOI: 10.1016/j.bej.2007.12.003  1
2008 Voit EO. Modelling metabolic networks using power-laws and S-systems. Essays in Biochemistry. 45: 29-40. PMID 18793121 DOI: 10.1042/BSE0450029  1
2008 Goel G, Chou IC, Voit EO. System estimation from metabolic time-series data. Bioinformatics (Oxford, England). 24: 2505-11. PMID 18772153 DOI: 10.1093/bioinformatics/btn470  1
2008 Qi Z, Miller GW, Voit EO. A mathematical model of presynaptic dopamine homeostasis: implications for schizophrenia. Pharmacopsychiatry. 41: S89-98. PMID 18756426 DOI: 10.1055/s-2008-1080936  1
2008 Voit EO, Qi Z, Miller GW. Steps of modeling complex biological systems. Pharmacopsychiatry. 41: S78-84. PMID 18756424 DOI: 10.1055/s-2008-1080911  1
2008 Qi Z, Miller GW, Voit EO. Computational systems analysis of dopamine metabolism. Plos One. 3: e2444. PMID 18568086 DOI: 10.1371/journal.pone.0002444  1
2008 Weitz JS, Mileyko Y, Joh RI, Voit EO. Collective decision making in bacterial viruses. Biophysical Journal. 95: 2673-80. PMID 18567629 DOI: 10.1529/biophysj.108.133694  1
2008 del Rosario RCH, Mendoza E, Voit EO. Challenges in lin-log modelling of glycolysis in Lactococcus lactis Iet Systems Biology. 2: 136-149. PMID 18537454 DOI: 10.1049/iet-syb:20070030  1
2008 Vilela M, Chou IC, Vinga S, Vasconcelos AT, Voit EO, Almeida JS. Parameter optimization in S-system models. Bmc Systems Biology. 2: 35. PMID 18416837 DOI: 10.1186/1752-0509-2-35  1
2008 Garcia J, Shea J, Alvarez-Vasquez F, Qureshi A, Luberto C, Voit EO, Del Poeta M. Mathematical modeling of pathogenicity of Cryptococcus neoformans. Molecular Systems Biology. 4: 183. PMID 18414484 DOI: 10.1038/msb.2008.17  1
2008 Feinendegen L, Hahnfeldt P, Schadt EE, Stumpf M, Voit EO. Systems biology and its potential role in radiobiology. Radiation and Environmental Biophysics. 47: 5-23. PMID 18087710 DOI: 10.1007/s00411-007-0146-8  1
2008 Polisetty PK, Gatzke EP, Voit EO. Yield optimization of regulated metabolic systems using deterministic branch-and-reduce methods. Biotechnology and Bioengineering. 99: 1154-69. PMID 18064703 DOI: 10.1002/bit.21679  1
2008 Yin W, Voit EO. Construction and customization of stable oscillation models in biology Journal of Biological Systems. 16: 463-478. DOI: 10.1142/S0218339008002502  1
2007 Alvarez-Vasquez F, Sims KJ, Voit EO, Hannun YA. Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift. Theoretical Biology & Medical Modelling. 4: 42. PMID 17974024 DOI: 10.1186/1742-4682-4-42  1
2007 Sims KJ, Alvarez-Vasquez F, Voit EO, Hannun YA. A guide to biochemical systems modeling of sphingolipids for the biochemist. Methods in Enzymology. 432: 319-50. PMID 17954223 DOI: 10.1016/S0076-6879(07)32013-2  1
2007 Marin-Sanguino A, Voit EO, Gonzalez-Alcon C, Torres NV. Optimization of biotechnological systems through geometric programming. Theoretical Biology & Medical Modelling. 4: 38. PMID 17897440 DOI: 10.1186/1742-4682-4-38  1
2007 Vilela M, Borges CC, Vinga S, Vasconcelos AT, Santos H, Voit EO, Almeida JS. Automated smoother for the numerical decoupling of dynamics models. Bmc Bioinformatics. 8: 305. PMID 17711581 DOI: 10.1186/1471-2105-8-305  1
2007 Schwacke JH, Voit EO. Concentration-dependent effects on the rapid and efficient activation of the MAP kinase signaling cascade. Proteomics. 7: 890-9. PMID 17370267 DOI: 10.1002/pmic.200600927  1
2007 Schwacke JH, Voit EO. The potential for signal integration and processing in interacting MAP kinase cascades. Journal of Theoretical Biology. 246: 604-20. PMID 17337011 DOI: 10.1016/j.jtbi.2006.12.035  1
2007 Wang FS, Ko CL, Voit EO. Kinetic modeling using S-systems and lin-log approaches Biochemical Engineering Journal. 33: 238-247. DOI: 10.1016/j.bej.2006.11.002  1
2007 Chou IC, Martens H, Voit EO. Parameter estimation of S-distributions with alternating regression Sort. 31: 55-74.  1
2006 Goel G, Chou IC, Voit EO. Biological systems modeling and analysis: a biomolecular technique of the twenty-first century. Journal of Biomolecular Techniques : Jbt. 17: 252-69. PMID 17028166  1
2006 Voit EO, Almeida J, Marino S, Lall R, Goel G, Neves AR, Santos H. Regulation of glycolysis in Lactococcus lactis: an unfinished systems biological case study. Systems Biology. 153: 286-98. PMID 16986630 DOI: 10.1049/ip-syb:20050087  1
2006 Marino S, Voit EO. An automated procedure for the extraction of metabolic network information from time series data. Journal of Bioinformatics and Computational Biology. 4: 665-91. PMID 16960969 DOI: 10.1142/S0219720006002259  1
2006 Chou IC, Martens H, Voit EO. Parameter estimation in biochemical systems models with alternating regression. Theoretical Biology & Medical Modelling. 3: 25. PMID 16854227 DOI: 10.1186/1742-4682-3-25  1
2006 Chen YA, Chou CC, Lu X, Slate EH, Peck K, Xu W, Voit EO, Almeida JS. A multivariate prediction model for microarray cross-hybridization. Bmc Bioinformatics. 7: 101. PMID 16509965 DOI: 10.1186/1471-2105-7-101  1
2006 Polisetty PK, Voit EO, Gatzke EP. Identification of metabolic system parameters using global optimization methods. Theoretical Biology & Medical Modelling. 3: 4. PMID 16441881 DOI: 10.1186/1742-4682-3-4  1
2006 Yu L, Voit EO. Construction of bivariate S-distributions with copulas Computational Statistics and Data Analysis. 51: 1822-1839. DOI: 10.1016/j.csda.2005.11.021  1
2006 Muiño JM, Voit EO, Sorribas A. GS-distributions: A new family of distributions for continuous unimodal variables Computational Statistics and Data Analysis. 50: 2769-2798. DOI: 10.1016/j.csda.2005.04.016  1
2005 Voit EO. Smooth bistable S-systems Iee Proceedings Systems Biology. 152: 207-213. PMID 16986262 DOI: 10.1049/ip-syb:20050063  1
2005 Lall R, Voit EO. Parameter estimation in modulated, unbranched reaction chains within biochemical systems. Computational Biology and Chemistry. 29: 309-18. PMID 16213792 DOI: 10.1016/j.compbiolchem.2005.08.001  1
2005 Mocek WT, Rudnicki R, Voit EO. Approximation of delays in biochemical systems Mathematical Biosciences. 198: 190-216. PMID 16181644 DOI: 10.1016/j.mbs.2005.08.001  1
2005 Ervadi-Radhakrishnan A, Voit EO. Controllability of non-linear biochemical systems. Mathematical Biosciences. 196: 99-123. PMID 15982674 DOI: 10.1016/j.mbs.2005.03.012  1
2005 Voit EO, Marino S, Lall R. Challenges for the identification of biological systems from in vivo time series data. In Silico Biology. 5: 83-92. PMID 15972008  1
2005 Schwacke JH, Voit EO. Computation and analysis of time-dependent sensitivities in Generalized Mass Action systems. Journal of Theoretical Biology. 236: 21-38. PMID 15967181 DOI: 10.1016/j.jtbi.2005.02.013  1
2005 Alvarez-Vasquez F, Sims KJ, Cowart LA, Okamoto Y, Voit EO, Hannun YA. Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae. Nature. 433: 425-30. PMID 15674294 DOI: 10.1038/nature03232  1
2005 He Q, Voit EO. Estimation and completion of survival data with piecewise linear models and S-distributions Journal of Statistical Computation and Simulation. 75: 287-305. DOI: 10.1080/00949650410001729418  1
2004 Veflingstad SR, Almeida J, Voit EO. Priming nonlinear searches for pathway identification. Theoretical Biology & Medical Modelling. 1: 8. PMID 15367330 DOI: 10.1186/1742-4682-1-8  1
2004 Voit EO, Alvarez-Vasquez F, Sims KJ. Analysis of dynamic labeling data. Mathematical Biosciences. 191: 83-99. PMID 15312745 DOI: 10.1016/j.mbs.2004.04.004  1
2004 Schwacke JH, Voit EO. Improved methods for the mathematically controlled comparison of biochemical systems. Theoretical Biology & Medical Modelling. 1: 1. PMID 15285792 DOI: 10.1186/1742-4682-1-1  1
2004 Sims KJ, Spassieva SD, Voit EO, Obeid LM. Yeast sphingolipid metabolism: clues and connections. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 82: 45-61. PMID 15052327 DOI: 10.1139/o03-086  1
2004 Voit EO, Almeida J. Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinformatics (Oxford, England). 20: 1670-81. PMID 14988125 DOI: 10.1093/bioinformatics/bth140  1
2004 Alvarez-Vasquez F, Sims KJ, Hannun YA, Voit EO. Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models. Journal of Theoretical Biology. 226: 265-91. PMID 14643642 DOI: 10.1016/j.jtbi.2003.08.010  1
2004 Voit EO. The dawn of a new era of metabolic systems analysis Drug Discovery Today: Biosilico. 2: 182-189. DOI: 10.1016/S1741-8364(04)02419-9  1
2003 Almeida JS, Voit EO. Neural-network-based parameter estimation in S-system models of biological networks. Genome Informatics. International Conference On Genome Informatics. 14: 114-23. PMID 15706526  1
2003 Voit EO, Riley M. Extending knowledge of Escherichia coli metabolism by modeling and experiment. Genome Biology. 4: 235. PMID 14611652 DOI: 10.1186/gb-2003-4-11-235  1
2003 Ferreira AE, Ponces Freire AM, Voit EO. A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose. The Biochemical Journal. 376: 109-21. PMID 12911334 DOI: 10.1042/BJ20030496  1
2003 Voit EO. Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis. Journal of Theoretical Biology. 223: 55-78. PMID 12782117 DOI: 10.1016/S0022-5193(03)00072-9  1
2003 Voit EO. Design principles and operating principles: the yin and yang of optimal functioning. Mathematical Biosciences. 182: 81-92. PMID 12547041 DOI: 10.1016/S0025-5564(02)00162-1  1
2003 Long CE, Voit EO, Gatzke EP. A Mixed Integer Moving Horizon Formulation for Prioritized Objective Inferential Control of a Bioprocess System Proceedings of the American Control Conference. 3: 2365-2370.  1
2002 Schwacke LH, Voit EO, Hansen LJ, Wells RS, Mitchum GB, Hohn AA, Fair PA. Probabilistic risk assessment of reproductive effects of polychlorinated biphenyls on bottlenose dolphins (Tursiops truncatus) from the Southeast United States Coast. Environmental Toxicology and Chemistry / Setac. 21: 2752-64. PMID 12463575  1
2002 Voit EO. Models-of-data and models-of-processes in the post-genomic era. Mathematical Biosciences. 180: 263-74. PMID 12387927 DOI: 10.1016/S0025-5564(02)00115-3  1
2002 Voit EO. Metabolic modeling: a tool of drug discovery in the post-genomic era. Drug Discovery Today. 7: 621-8. PMID 12047873 DOI: 10.1016/S1359-6446(02)02280-8  1
2002 Shiraishi F, Voit EO. Solution of a two-point boundary value model of immobilized enzyme reactions, using an S-system-based root-finding method Applied Mathematics and Computation. 127: 289-310. DOI: 10.1016/S0096-3003(01)00008-X  1
2001 Voit EO, Signore MD. Assessment of effects of experimental imprecision on optimized biochemical systems Biotechnology and Bioengineering. 74: 443-448. PMID 11427946 DOI: 10.1002/bit.1135  1
2000 Voit EO, Radivoyevitch T. Biochemical systems analysis of genome-wide expression data Bioinformatics. 16: 1023-1037. PMID 11159314  1
2000 Voit EO. Canonical modeling: Review of concepts with emphasis on environmental health Environmental Health Perspectives. 108: 895-909. PMID 11035999  1
2000 Voit EO. Utility of Biochemical Systems Theory for the analysis of metabolic effects from low-dose chemical exposure Risk Analysis. 20: 393-402. PMID 10949418 DOI: 10.1111/0272-4332.203038  1
2000 Voit EO, Schwacke LH. Random number generation from right-skewed, symmetric, and left-skewed distributions Risk Analysis. 20: 59-71. PMID 10795339 DOI: 10.1111/0272-4332.00006  1
2000 Sorribas A, March J, Voit EO. Estimating age-related trends in cross-sectional studies using S- distributions Statistics in Medicine. 19: 697-713. PMID 10700740 DOI: 10.1002/(SICI)1097-0258(20000315)19:5<697::AID-SIM378>3.0.CO;2-Y  1
2000 Voit BF, Voit EO. A 7th-grade science project casts doubt on the standard explanation of the Gaussian plume model for seepage through soil Environmental Modelling and Software. 15: 497-499. DOI: 10.1016/S1364-8152(00)00026-8  1
2000 Voit EO, Sorribas A. Computer modeling of dynamically changing distributions of random variables Mathematical and Computer Modelling. 31: 217-225. DOI: 10.1016/S0895-7177(00)00041-8  1
2000 Thompson RE, Voit EO, Scott GI. A probabilistic model for predicting distributions of PAH ratios between oysters and marine sediments Ecological Modelling. 135: 231-242. DOI: 10.1016/S0304-3800(00)00367-7  1
2000 Thompson RE, Voit EO, Scott GI. Statistical modeling of sediment and oyster PAH contamination data collected at a South Carolina estuary (complete and left-censored samples) Environmetrics. 11: 99-119. DOI: 10.1002/(SICI)1099-095X(200001/02)11:1<99::AID-ENV391>3.0.CO;2-4  1
2000 Voit EO. A maximum likelihood estimator for shape parameters of S-distributions Biometrical Journal. 42: 471-479.  1
1998 Curto R, Voit EO, Sorribas A, Cascante M. Mathematical models of purine metabolism in man Mathematical Biosciences. 151: 1-49. PMID 9664759 DOI: 10.1016/S0025-5564(98)10001-9  1
1998 Curto P, Voit EO, Cascante M. Analysis of abnormalities in purine metabolism leading to gout and to neurological dysfunctions in man Biochemical Journal. 329: 477-487. PMID 9445373  1
1998 Voit EO, Ferreira AEN. Buffering in models of integrated biochemical systems Journal of Theoretical Biology. 191: 429-437. DOI: 10.1006/jtbi.1997.0605  1
1998 Voit EO, Schwacke LH. Scalability properties of the S-distribution Biometrical Journal. 40: 665-684.  1
1998 Torres NV, Voit EO, Glez-Alcón C, Rodríguez F. A novel approach to design of overexpression strategy for metabolic engineering. Application to the carbohydrate metabolism in the citric acid producing mould Aspergillus niger Food Technology and Biotechnology. 36: 177-184.  1
1997 Voit EO, Knapp RG. Derivation of the linear-logistic model and Cox's proportional hazard model from a canonical system description. Statistics in Medicine. 16: 1705-29. PMID 9265695 DOI: 10.1002/(SICI)1097-0258(19970815)16:15<1705::AID-SIM599>3.0.CO;2-7  1
1997 Curto R, Voit EO, Sorribas A, Cascante M. Validation and steady-state analysis of a power-law model of purine metabolism in man Biochemical Journal. 324: 761-775. PMID 9210399  1
1997 Torres NV, Voit EO, Glez-Alcón C, Rodríguez F. An indirect optimization method for biochemical systems: Description of method and application to the maximization of the rate of ethanol, glycerol, and carbohydrate production in Saccharomyces cerevisiae Biotechnology and Bioengineering. 55: 758-772. DOI: 10.1002/(SICI)1097-0290(19970905)55:5<758::AID-BIT6>3.0.CO;2-A  1
1996 Berg PH, Voit EO, White RL. A pharmacodynamic model for the action of the antibiotic imipenem on Pseudomonas aeruginosa populations in vitro. Bulletin of Mathematical Biology. 58: 923-38. PMID 8837524  1
1996 Sands PJ, Voit EO. Flux-based estimation of parameters in S-systems Ecological Modelling. 93: 75-88. DOI: 10.1016/0304-3800(95)00215-4  1
1996 Balthis WL, Voit EO, Meaburn GM. Setting prediction limits for mercury concentrations in fish having high bioaccumulation potential Environmetrics. 7: 429-439. DOI: 10.1002/(SICI)1099-095X(199607)7:4<429::AID-ENV225>3.0.CO;2-C  1
1996 Torres NV, Voit EO, González-Alcón C. Optimization of nonlinear biotechnological processes with linear programming: Application to citric acid production by Aspergillus niger Biotechnology and Bioengineering. 49: 247-258. DOI: 10.1002/(SICI)1097-0290(19960205)49:3<247::AID-BIT2>3.0.CO;2-K  1
1996 Voit EO. Dynamic trends in distributions Biometrical Journal. 38: 587-603.  1
1996 Voit EO, Sands PJ. Modeling forest growth I. Canonical approach Ecological Modelling. 86: 51-71.  1
1996 Voit EO, Sands PJ. Modeling forest growth II. Biomass partitioning in Scots pine Ecological Modelling. 86: 73-89.  1
1995 Voit EO, Leonard Balthis W, Holser RA. Hierarchical Monte Carlo modeling with S-distributions: Concepts and illustrative analysis of mercury contamination in king mackerel Environment International. 21: 627-635. DOI: 10.1016/0160-4120(95)00067-U  1
1994 Zhang Z, Zhang H, Voit EO. A fast algorithm for computing lie series solutions of autonomous differential equations International Journal of Computer Mathematics. 53: 237-251. DOI: 10.1080/00207169408804330  1
1993 Voit EO. S-system modelling of complex systems with chaotic input Environmetrics. 4: 153-186.  1
1992 Voit EO. Symmetries of S-systems Mathematical Biosciences. 109: 19-37. PMID 1591448 DOI: 10.1016/0025-5564(92)90050-7  1
1992 Voit EO, Rust PF. Tutorial: S-system analysis of continuous univariate probability distributions Journal of Statistical Computation and Simulation. 42: 187-249. DOI: 10.1080/00949659208811421  1
1992 Voit EO. Optimization in integrated biochemical systems Biotechnology and Bioengineering. 40: 572-582.  1
1990 Voit EO, Yi PN. Comparison of isoeffect relationships in radiotherapy Bulletin of Mathematical Biology. 52: 657-675. PMID 2224285 DOI: 10.1007/BF02462104  1
1990 Rust PF, Voit EO. Statistical densities, cumulatives, quantiles, and power obtained by S-system differential equations Journal of the American Statistical Association. 85: 572-578. DOI: 10.1080/01621459.1990.10476237  1
1990 Voit EO. S-system modelling of endemic infections Computers and Mathematics With Applications. 20: 161-173. DOI: 10.1016/0898-1221(90)90325-E  1
1989 Voit EO. New nonlinear methodologies for modeling molecular and cellular systems Ifac Proceedings Series. 217-228.  1
1988 Voit EO, Anton HJ. Estimation of cell cycle parameters from double labeling experiments Journal of Theoretical Biology. 131: 435-440. PMID 3193778 DOI: 10.1016/S0022-5193(88)80039-0  1
1988 Voit EO. Recasting nonlinear models as S-systems Mathematical and Computer Modelling. 11: 140-145. DOI: 10.1016/0895-7177(88)90469-4  1
1988 Voit EO. Dynamics of self-thinning plant stands Annals of Botany. 62: 67-78.  1
1987 Voit EO, Savageau MA. Accuracy of alternative representations for integrated biochemical systems Biochemistry. 26: 6869-6880. PMID 3427048  1
1987 Savageau MA, Voit EO. Recasting nonlinear differential equations as S-systems: a canonical nonlinear form Mathematical Biosciences. 87: 83-115. DOI: 10.1016/0025-5564(87)90035-6  1
1987 Savageau MA, Voit EO, Irvine DH. Biochemical systems theory and metabolic control theory: 2. the role of summation and connectivity relationships Mathematical Biosciences. 86: 147-169. DOI: 10.1016/0025-5564(87)90008-3  1
1987 Savageau MA, Voit EO, Irvine DH. Biochemical systems theory and metabolic control theory: 1. fundamental similarities and differences Mathematical Biosciences. 86: 127-145. DOI: 10.1016/0025-5564(87)90007-1  1
1986 Voit EO, Savageau MA. Equivalence between S-systems and Volterra systems Mathematical Biosciences. 78: 47-55. DOI: 10.1016/0025-5564(86)90030-1  1
1985 Voit EO. Cell cycles and growth laws: the CCC model Journal of Theoretical Biology. 114: 589-599. PMID 4021508 DOI: 10.1016/S0022-5193(85)80045-X  1
1985 Voit EO, Anton HJ. Derivation of the frequency distributions of cycle durations from continuous labeling curves Journal of Theoretical Biology. 112: 575-588. PMID 3982054 DOI: 10.1016/S0022-5193(85)80023-0  1
1985 Voit EO, Anton HJ, Blecker J. Regenerative growth curves Mathematical Biosciences. 73: 253-269. DOI: 10.1016/0025-5564(85)90015-X  1
1984 Voit EO. Encounters in predator-prey systems: A simple discrete model Biosystems. 17: 57-63. PMID 6743794 DOI: 10.1016/0303-2647(84)90016-9  1
1984 Voit EO, Savageau MA. Analytical solutions to a generalized growth equation Journal of Mathematical Analysis and Applications. 103: 380-386. DOI: 10.1016/0022-247X(84)90135-5  1
1983 Voit EO, Dick G. Growth of cell populations with arbitrarily distributed cycle durations. II. extended model for correlated cycle durations of mother and daughter cells Mathematical Biosciences. 66: 247-262. DOI: 10.1016/0025-5564(83)90091-3  1
1983 Voit EO, Dick G. Growth of cell populations with arbitrarily distributed cycle durations. I. basic model Mathematical Biosciences. 66: 229-246. DOI: 10.1016/0025-5564(83)90090-1  1
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