Year |
Citation |
Score |
2023 |
Olivença DV, Davis JD, Kumbale CM, Zhao CY, Brown SP, McCarty NA, Voit EO. Mathematical models of cystic fibrosis as a systemic disease. Wires Mechanisms of Disease. e1625. PMID 37544654 DOI: 10.1002/wsbm.1625 |
0.795 |
|
2022 |
Olivença DV, Davis JD, Voit EO. Inference of dynamic interaction networks: A comparison between Lotka-Volterra and multivariate autoregressive models. Frontiers in Bioinformatics. 2: 1021838. PMID 36619477 DOI: 10.3389/fbinf.2022.1021838 |
0.793 |
|
2022 |
DeBarry JD, Nural MV, Pakala SB, Nayak V, Warrenfeltz S, Humphrey J, Lapp SA, Cabrera-Mora M, Brito CFA, Jiang J, Saney CL, Hankus A, Stealey HM, DeBarry MB, Lackman N, ... ... Voit EO, et al. MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques. Scientific Data. 9: 722. PMID 36433985 DOI: 10.1038/s41597-022-01755-y |
0.785 |
|
2022 |
Peterson MS, Joyner CJ, Lapp SA, Brady JA, Wood JS, Cabrera-Mora M, Saney CL, Fonseca LL, Cheng WT, Jiang J, Soderberg SR, Nural MV, Hankus A, Machiah D, Karpuzoglu E, ... ... Voit EO, et al. Cytoadhesion Involves SICA Variant Proteins. Frontiers in Cellular and Infection Microbiology. 12: 888496. PMID 35811680 DOI: 10.3389/fcimb.2022.888496 |
0.758 |
|
2022 |
Voit EO, Olivença DV. Discrete Biochemical Systems Theory. Frontiers in Molecular Biosciences. 9: 874669. PMID 35601832 DOI: 10.3389/fmolb.2022.874669 |
0.814 |
|
2022 |
Gupta A, Galinski MR, Voit EO. Dynamic Control Balancing Cell Proliferation and Inflammation is Crucial for an Effective Immune Response to Malaria. Frontiers in Molecular Biosciences. 8: 800721. PMID 35242812 DOI: 10.3389/fmolb.2021.800721 |
0.57 |
|
2021 |
Peterson MS, Joyner CJ, Brady JA, Wood JS, Cabrera-Mora M, Saney CL, Fonseca LL, Cheng WT, Jiang J, Lapp SA, Soderberg SR, Nural MV, Humphrey JC, Hankus A, Machiah D, ... ... Voit EO, et al. Clinical recovery of Macaca fascicularis infected with Plasmodium knowlesi. Malaria Journal. 20: 486. PMID 34969401 DOI: 10.1186/s12936-021-03925-6 |
0.756 |
|
2021 |
Gupta A, Styczynski MP, Galinski MR, Voit EO, Fonseca LL. Dramatic transcriptomic differences in Macaca mulatta and Macaca fascicularis with Plasmodium knowlesi infections. Scientific Reports. 11: 19519. PMID 34593836 DOI: 10.1038/s41598-021-98024-6 |
0.776 |
|
2021 |
Dalvi-Garcia F, Fonseca LL, Vasoncelos ATR, Hedin-Pereira C, Voit EO. A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression. Plos Computational Biology. 17: e1008956. PMID 33970902 DOI: 10.1371/journal.pcbi.1008956 |
0.789 |
|
2020 |
Dattner I, Ship H, Voit EO. Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems. Complexity. 2020. PMID 34113070 DOI: 10.1155/2020/6403641 |
0.304 |
|
2020 |
Wade JD, Lun XK, Zivanovic N, Voit EO, Bodenmiller B. Mechanistic Model of Signaling Dynamics Across an Epithelial Mesenchymal Transition. Frontiers in Physiology. 11: 579117. PMID 33329028 DOI: 10.3389/fphys.2020.579117 |
0.658 |
|
2020 |
Olivença DV, Voit EO, Pinto FR. ENaC regulation by phospholipids and DGK explained through mathematical modeling. Scientific Reports. 10: 13952. PMID 32811866 DOI: 10.1038/S41598-020-70630-W |
0.798 |
|
2020 |
Bodine EN, Panoff RM, Voit EO, Weisstein AE. Agent-Based Modeling and Simulation in Mathematics and Biology Education. Bulletin of Mathematical Biology. 82: 101. PMID 32725363 DOI: 10.1007/S11538-020-00778-Z |
0.378 |
|
2020 |
Dam P, Rodriguez-R LM, Luo C, Hatt J, Tsementzi D, Konstantinidis KT, Voit EO. Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes. Scientific Reports. 10: 2423. PMID 32051429 DOI: 10.1038/S41598-020-58769-Y |
0.768 |
|
2020 |
Dattner I, Ship H, Voit EO. Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems Complexity. 2020: 1-11. DOI: 10.1155/2020/6403641 |
0.409 |
|
2019 |
Voit EO. Perspective: Dimensions of the scientific method. Plos Computational Biology. 15: e1007279. PMID 31513575 DOI: 10.1371/Journal.Pcbi.1007279 |
0.313 |
|
2019 |
Olivença DV, Fonseca LL, Voit EO, Pinto FR. Thickness of the airway surface liquid layer in the lung is affected in cystic fibrosis by compromised synergistic regulation of the ENaC ion channel. Journal of the Royal Society, Interface. 16: 20190187. PMID 31455163 DOI: 10.1098/Rsif.2019.0187 |
0.773 |
|
2019 |
Davis JD, Kumbale CM, Zhang Q, Voit EO. Dynamical systems approaches to personalized medicine. Current Opinion in Biotechnology. 58: 168-174. PMID 30978644 DOI: 10.1016/J.Copbio.2019.03.005 |
0.32 |
|
2019 |
Glen CM, Kemp ML, Voit EO. Agent-based modeling of morphogenetic systems: Advantages and challenges. Plos Computational Biology. 15: e1006577. PMID 30921323 DOI: 10.1371/Journal.Pcbi.1006577 |
0.382 |
|
2019 |
Dalvi-Garcia F, Fonseca LLD, Hedin-Pereira C, Vasconcelos ATRD, Voit E. Modeling the Effects of Cortisol in Serotonergic-Kynurenic Pathways in the Etiology of Depressive Behavior Ibro Reports. 6: S409. DOI: 10.1016/J.Ibror.2019.07.1302 |
0.77 |
|
2018 |
Downs DM, Bazurto JV, Gupta A, Fonseca LL, Voit EO. The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling. Aims Microbiology. 4: 289-303. PMID 31294216 DOI: 10.3934/microbiol.2018.2.289 |
0.796 |
|
2018 |
Davis JD, Voit EO. Metrics for Regulated Biochemical Pathway Systems. Bioinformatics (Oxford, England). PMID 30428007 DOI: 10.1093/Bioinformatics/Bty942 |
0.343 |
|
2018 |
Fonseca LL, Joyner CJ, Saney CL, Moreno A, Barnwell JW, Galinski MR, Voit EO. Analysis of erythrocyte dynamics in Rhesus macaque monkeys during infection with Plasmodium cynomolgi. Malaria Journal. 17: 410. PMID 30400896 DOI: 10.1186/S12936-018-2560-6 |
0.779 |
|
2018 |
Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle NL, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO. A dynamic model of lignin biosynthesis in . Biotechnology For Biofuels. 11: 253. PMID 30250505 DOI: 10.1186/S13068-018-1241-6 |
0.776 |
|
2018 |
Olivença DV, Uliyakina I, Fonseca LL, Amaral MD, Voit EO, Pinto FR. A Mathematical Model of the Phosphoinositide Pathway. Scientific Reports. 8: 3904. PMID 29500467 DOI: 10.1038/S41598-018-22226-8 |
0.797 |
|
2018 |
Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle N, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO. Mathematical models of lignin biosynthesis. Biotechnology For Biofuels. 11: 34. PMID 29449882 DOI: 10.1186/S13068-018-1028-9 |
0.776 |
|
2017 |
Tang Y, Gupta A, Garimalla S, Galinski MR, Styczynski MP, Fonseca LL, Voit EO. Metabolic modeling helps interpret Transcriptomic changes during malaria. Biochimica Et Biophysica Acta. PMID 29069611 DOI: 10.1016/J.Bbadis.2017.10.023 |
0.813 |
|
2017 |
Fonseca LL, Joyner CJ, Galinski MR, Voit EO. A model of Plasmodium vivax concealment based on Plasmodium cynomolgi infections in Macaca mulatta. Malaria Journal. 16: 375. PMID 28923058 DOI: 10.1186/S12936-017-2008-4 |
0.771 |
|
2017 |
Galinski MR, Lapp SA, Peterson MS, Ay F, Joyner CJ, LE Roch KG, Fonseca LL, Voit EO. Plasmodium knowlesi: a superb in vivo nonhuman primate model of antigenic variation in malaria. Parasitology. 1-16. PMID 28712361 DOI: 10.1017/S0031182017001135 |
0.783 |
|
2017 |
Marshall-Colon A, Long SP, Allen DK, Allen G, Beard DA, Benes B, von Caemmerer S, Christensen AJ, Cox DJ, Hart JC, Hirst PM, Kannan K, Katz DS, Lynch JP, Millar AJ, ... ... Voit EO, et al. Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Frontiers in Plant Science. 8: 786. PMID 28555150 DOI: 10.3389/Fpls.2017.00786 |
0.35 |
|
2017 |
Voit EO. The best models of metabolism. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. PMID 28544810 DOI: 10.1002/Wsbm.1391 |
0.417 |
|
2017 |
Qi Z, Roback JD, Voit EO. Effects of Storage Time on Glycolysis in Donated Human Blood Units. Metabolites. 7. PMID 28353627 DOI: 10.3390/Metabo7020012 |
0.641 |
|
2017 |
Faraji M, Voit EO. Stepwise Inference of Likely Dynamic Flux Distributions from Metabolic Time Series Data. Bioinformatics (Oxford, England). PMID 28334199 DOI: 10.1093/Bioinformatics/Btx126 |
0.761 |
|
2017 |
Qi Z, Voit EO. Inference of cancer mechanisms through computational systems analysis. Molecular Biosystems. PMID 28112324 DOI: 10.1039/C6Mb00672H |
0.642 |
|
2017 |
Faraji M, Voit EO. Improving Bioenergy Crops through Dynamic Metabolic Modeling Processes. 5: 61. DOI: 10.3390/PR5040061 |
0.751 |
|
2016 |
Dam P, Fonseca LL, Konstantinidis KT, Voit EO. Dynamic models of the complex microbial metapopulation of lake mendota. Npj Systems Biology and Applications. 2: 16007. PMID 28725469 DOI: 10.1038/npjsba.2016.7 |
0.78 |
|
2016 |
Faraji M, Voit EO. Nonparametric dynamic modeling. Mathematical Biosciences. PMID 27590775 DOI: 10.1016/J.Mbs.2016.08.004 |
0.782 |
|
2016 |
Fonseca LL, Alezi HS, Moreno A, Barnwell JW, Galinski MR, Voit EO. Quantifying the removal of red blood cells in Macaca mulatta during a Plasmodium coatneyi infection. Malaria Journal. 15: 410. PMID 27520455 DOI: 10.1186/S12936-016-1465-5 |
0.775 |
|
2016 |
Qi Z, Voit E. Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27392364 DOI: 10.1109/Tcbb.2016.2586065 |
0.663 |
|
2016 |
Qi Z, Yu GP, Tretter F, Pogarell O, Grace AA, Voit EO. A heuristic model for working memory deficit in schizophrenia. Biochimica Et Biophysica Acta. PMID 27177811 DOI: 10.1016/J.Bbagen.2016.04.031 |
0.58 |
|
2016 |
Dolatshahi S, Voit EO. Identification of Metabolic Pathway Systems. Frontiers in Genetics. 7: 6. PMID 26904095 DOI: 10.3389/Fgene.2016.00006 |
0.796 |
|
2016 |
Chen PW, Fonseca LL, Hannun YA, Voit EO. Analysis of the Involvement of Different Ceramide Variants in the Response to Hydroxyurea Stress in Baker's Yeast. Plos One. 11: e0146839. PMID 26784947 DOI: 10.1371/Journal.Pone.0146839 |
0.784 |
|
2016 |
Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model. Molecular Biosystems. 12: 23-36. PMID 26609637 DOI: 10.1039/C5Mb00331H |
0.82 |
|
2016 |
Voit EO. Canonical Modeling: A Link Between Environmental Models and Statistics Austrian Journal of Statistics. 27: 109-121. DOI: 10.17713/Ajs.V27I1 |
0.384 |
|
2015 |
Dolatshahi S, Fonseca LL, Voit EO. New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. II. Inference of the precisely timed control system regulating glycolysis. Molecular Biosystems. 12: 37-47. PMID 26609780 DOI: 10.1039/C5Mb00726G |
0.783 |
|
2015 |
Gutierrez JB, Galinski MR, Cantrell S, Voit EO. From within host dynamics to the epidemiology of infectious disease: Scientific overview and challenges. Mathematical Biosciences. PMID 26474512 DOI: 10.1016/J.Mbs.2015.10.002 |
0.33 |
|
2015 |
Faraji M, Fonseca LL, Escamilla-Treviño L, Dixon RA, Voit EO. Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum. Biotechnology For Biofuels. 8: 151. PMID 26388938 DOI: 10.1186/S13068-015-0334-8 |
0.802 |
|
2015 |
Fonseca LL, Voit EO. Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria infection. Mathematical Biosciences. 270: 224-36. PMID 26362230 DOI: 10.1016/J.Mbs.2015.08.020 |
0.783 |
|
2015 |
Chen PW, Fonseca LL, Hannun YA, Voit EO. Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast. Plos Computational Biology. 11: e1004373. PMID 26241868 DOI: 10.1371/Journal.Pcbi.1004373 |
0.803 |
|
2015 |
Voit EO, Martens HA, Omholt SW. 150 years of the mass action law. Plos Computational Biology. 11: e1004012. PMID 25569257 DOI: 10.1371/Journal.Pcbi.1004012 |
0.338 |
|
2014 |
Qi Z, Voit EO. Identification of cancer mechanisms through computational systems modeling. Translational Cancer Research. 3: 233-242. PMID 26662197 DOI: 10.3978/J.Issn.2218-676X.2014.05.03 |
0.659 |
|
2014 |
Shiraishi F, Yoshida E, Voit EO. An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 1077-86. PMID 26357045 DOI: 10.1109/Tcbb.2014.2338311 |
0.43 |
|
2014 |
Qi Z, Tretter F, Voit EO. A heuristic model of alcohol dependence. Plos One. 9: e92221. PMID 24658530 DOI: 10.1371/Journal.Pone.0092221 |
0.634 |
|
2014 |
Qi Z, Miller GW, Voit EO. Rotenone and paraquat perturb dopamine metabolism: A computational analysis of pesticide toxicity. Toxicology. 315: 92-101. PMID 24269752 DOI: 10.1016/J.Tox.2013.11.003 |
0.643 |
|
2014 |
Voit EO. Mesoscopic modeling as a starting point for computational analyses of cystic fibrosis as a systemic disease. Biochimica Et Biophysica Acta. 1844: 258-70. PMID 23570976 DOI: 10.1016/J.Bbapap.2013.03.023 |
0.416 |
|
2014 |
Adouani N, Limousy L, Lendormi T, Voit EO, Sire O. Simulation of the denitrification process of waste water with a biochemical systems model: A non-conventional approach International Journal of Chemical Reactor Engineering. 12: 683-693. DOI: 10.1515/Ijcre-2014-0050 |
0.366 |
|
2014 |
Dolatshahi S, Vidakovic B, Voit EO. A constrained wavelet smoother for pathway identification tasks in systems biology Computers and Chemical Engineering. 71: 728-733. DOI: 10.1016/J.Compchemeng.2014.07.019 |
0.781 |
|
2013 |
Carvalho AL, Turner DL, Fonseca LL, Solopova A, Catarino T, Kuipers OP, Voit EO, Neves AR, Santos H. Metabolic and transcriptional analysis of acid stress in Lactococcus lactis, with a focus on the kinetics of lactic acid pools. Plos One. 8: e68470. PMID 23844205 DOI: 10.1371/Journal.Pone.0068470 |
0.767 |
|
2013 |
Chen PW, Fonseca LL, Hannun YA, Voit EO. Coordination of rapid sphingolipid responses to heat stress in yeast. Plos Computational Biology. 9: e1003078. PMID 23737740 DOI: 10.1371/Journal.Pcbi.1003078 |
0.801 |
|
2013 |
Qi Z, Fieni D, Tretter F, Voit EO. The neurochemical mobile with non-linear interaction matrix: an exploratory computational model Pharmacopsychiatry. 46. PMID 23599246 DOI: 10.1055/s-0033-1337920 |
0.603 |
|
2013 |
Yin W, Voit EO. Function and design of the Nox1 system in vascular smooth muscle cells. Bmc Systems Biology. 7: 20. PMID 23497394 DOI: 10.1186/1752-0509-7-20 |
0.589 |
|
2013 |
Voit EO. Characterizability of metabolic pathway systems from time series data. Mathematical Biosciences. 246: 315-25. PMID 23391489 DOI: 10.1016/J.Mbs.2013.01.008 |
0.443 |
|
2013 |
Voit EO. Biochemical Systems Theory: A Review Isrn Biomathematics. 2013: 1-53. DOI: 10.1155/2013/897658 |
0.34 |
|
2013 |
Kikuchi S, Voit EO. Regulatory crosstalk analysis of biochemical networks in the hippocampus and nucleus accumbens Systems Biology: Integrative Biology and Simulation Tools. 95-127. DOI: 10.1007/978-94-007-6803-1_4 |
0.548 |
|
2012 |
Fonseca LL, Chen PW, Voit EO. Canonical modeling of the multi-scale regulation of the heat stress response in yeast. Metabolites. 2: 221-41. PMID 24957376 DOI: 10.3390/Metabo2010221 |
0.803 |
|
2012 |
Lee Y, Escamilla-Treviño L, Dixon RA, Voit EO. Functional analysis of metabolic channeling and regulation in lignin biosynthesis: a computational approach. Plos Computational Biology. 8: e1002769. PMID 23144605 DOI: 10.1371/Journal.Pcbi.1002769 |
0.436 |
|
2012 |
Voit EO, Newstetter WC, Kemp ML. A feel for systems. Molecular Systems Biology. 8: 609. PMID 22968443 DOI: 10.1038/Msb.2012.41 |
0.343 |
|
2012 |
Chou IC, Voit EO. Estimation of dynamic flux profiles from metabolic time series data. Bmc Systems Biology. 6: 84. PMID 22776140 DOI: 10.1186/1752-0509-6-84 |
0.761 |
|
2012 |
Voit EO, Qi Z, Qui Z, Kikuchi S. Mesoscopic models of neurotransmission as intermediates between disease simulators and tools for discovering design principles. Pharmacopsychiatry. 45: S22-30. PMID 22565231 DOI: 10.1055/S-0032-1304653 |
0.735 |
|
2012 |
Qi Z, Miller GW, Voit EO. Mathematical models of dopamine metabolism in parkinson’s disease Systems Biology of Parkinson's Disease. 151-171. DOI: 10.1007/978-1-4614-3411-5_8 |
0.607 |
|
2011 |
Alvarez-Vasquez F, Riezman H, Hannun YA, Voit EO. Mathematical modeling and validation of the ergosterol pathway in Saccharomyces cerevisiae. Plos One. 6: e28344. PMID 22194828 DOI: 10.1371/Journal.Pone.0028344 |
0.391 |
|
2011 |
Wu J, Vidakovic B, Voit EO. Constructing stochastic models from deterministic process equations by propensity adjustment. Bmc Systems Biology. 5: 187. PMID 22067083 DOI: 10.1186/1752-0509-5-187 |
0.602 |
|
2011 |
Wu J, Qi Z, Voit EO. Impact of delays and noise on dopamine signal transduction. Studies in Health Technology and Informatics. 162: 222-35. PMID 21685574 |
0.695 |
|
2011 |
Lee Y, Chen F, Gallego-Giraldo L, Dixon RA, Voit EO. Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis. Plos Computational Biology. 7: e1002047. PMID 21625579 DOI: 10.1371/Journal.Pcbi.1002047 |
0.506 |
|
2011 |
Qi Z, Kikuchi S, Tretter F, Voit EO. Effects of dopamine and glutamate on synaptic plasticity: A computational modeling approach for drug abuse as comorbidity in mood disorders Pharmacopsychiatry. 44. PMID 21544747 DOI: 10.1055/S-0031-1273707 |
0.696 |
|
2011 |
Ndukum J, Fonseca LL, Santos H, Voit EO, Datta S. Statistical inference methods for sparse biological time series data. Bmc Systems Biology. 5: 57. PMID 21518445 DOI: 10.1186/1752-0509-5-57 |
0.804 |
|
2011 |
Lee Y, Chen PW, Voit EO. Analysis of operating principles with S-system models. Mathematical Biosciences. 231: 49-60. PMID 21377479 DOI: 10.1016/J.Mbs.2011.03.001 |
0.682 |
|
2011 |
Marin-Sanguino A, Gupta SK, Voit EO, Vera J. Biochemical pathway modeling tools for drug target detection in cancer and other complex diseases. Methods in Enzymology. 487: 319-69. PMID 21187230 DOI: 10.1016/B978-0-12-381270-4.00011-1 |
0.358 |
|
2011 |
Fonseca LL, Sánchez C, Santos H, Voit EO. Complex coordination of multi-scale cellular responses to environmental stress. Molecular Biosystems. 7: 731-41. PMID 21088798 DOI: 10.1039/C0Mb00102C |
0.798 |
|
2010 |
Wu J, Qi Z, Voit EO. Impact of delays and noise on dopamine signal transduction. In Silico Biology. 10: 67-80. PMID 22430222 DOI: 10.3233/Isb-2010-0413 |
0.715 |
|
2010 |
Voit EO, Alvarez-Vasquez F, Hannun YA. Computational analysis of sphingolipid pathway systems. Advances in Experimental Medicine and Biology. 688: 264-75. PMID 20919661 DOI: 10.1007/978-1-4419-6741-1_19 |
0.432 |
|
2010 |
Lee Y, Voit EO. Mathematical modeling of monolignol biosynthesis in Populus xylem. Mathematical Biosciences. 228: 78-89. PMID 20816867 DOI: 10.1016/J.Mbs.2010.08.009 |
0.546 |
|
2010 |
Qi Z, Miller GW, Voit EO. Computational modeling of synaptic neurotransmission as a tool for assessing dopamine hypotheses of schizophrenia. Pharmacopsychiatry. 43: S50-60. PMID 20486051 DOI: 10.1055/s-0030-1248317 |
0.574 |
|
2010 |
Qi Z, Miller GW, Voit EO. The internal state of medium spiny neurons varies in response to different input signals. Bmc Systems Biology. 4: 26. PMID 20236543 DOI: 10.1186/1752-0509-4-26 |
0.635 |
|
2010 |
Machina A, Ponosov A, Voit EO. Automated piecewise power-law modeling of biological systems. Journal of Biotechnology. 149: 154-65. PMID 20060428 DOI: 10.1016/J.Jbiotec.2009.12.016 |
0.819 |
|
2010 |
Marin-Sanguino A, Mendoza ER, Voit EO. Flux duality in nonlinear GMA systems: implications for metabolic engineering. Journal of Biotechnology. 149: 166-72. PMID 20015458 DOI: 10.1016/J.Jbiotec.2009.12.009 |
0.43 |
|
2010 |
Yin W, Jo H, Voit EO. Systems analysis of the role of bone morphogenic protein 4 in endothelial inflammation. Annals of Biomedical Engineering. 38: 291-307. PMID 19851868 DOI: 10.1007/S10439-009-9822-Y |
0.581 |
|
2010 |
Voit EO. The role of systems modeling in drug discovery and predictive health Journal of Cheminformatics. 2. DOI: 10.1186/1758-2946-2-S1-O2 |
0.41 |
|
2009 |
Voit EO, Goel G, Chou IC, Fonseca LL. Estimation of metabolic pathway systems from different data sources. Iet Systems Biology. 3: 513-22. PMID 19947777 DOI: 10.1049/Iet-Syb.2008.0180 |
0.801 |
|
2009 |
Qi Z, Miller GW, Voit EO. Computational analysis of determinants of dopamine (DA) dysfunction in DA nerve terminals. Synapse (New York, N.Y.). 63: 1133-42. PMID 19670315 DOI: 10.1002/Syn.20686 |
0.623 |
|
2009 |
Ko CL, Voit EO, Wang FS. Estimating parameters for generalized mass action models with connectivity information. Bmc Bioinformatics. 10: 140. PMID 19432964 DOI: 10.1186/1471-2105-10-140 |
0.361 |
|
2009 |
Vilela M, Vinga S, Maia MA, Voit EO, Almeida JS. Identification of neutral biochemical network models from time series data. Bmc Systems Biology. 3: 47. PMID 19416537 DOI: 10.1186/1752-0509-3-47 |
0.405 |
|
2009 |
Chou IC, Voit EO. Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Mathematical Biosciences. 219: 57-83. PMID 19327372 DOI: 10.1016/J.Mbs.2009.03.002 |
0.766 |
|
2009 |
Wu J, Voit E. Hybrid modeling in biochemical systems theory by means of functional petri nets. Journal of Bioinformatics and Computational Biology. 7: 107-34. PMID 19226663 DOI: 10.1142/S0219720009004047 |
0.624 |
|
2009 |
Voit EO. A systems-theoretical framework for health and disease: inflammation and preconditioning from an abstract modeling point of view. Mathematical Biosciences. 217: 11-8. PMID 18851981 DOI: 10.1016/J.Mbs.2008.09.005 |
0.334 |
|
2009 |
Vodovotz Y, Constantine G, Rubin J, Csete M, Voit EO, An G. Mechanistic simulations of inflammation: current state and future prospects. Mathematical Biosciences. 217: 1-10. PMID 18835282 DOI: 10.1016/J.Mbs.2008.07.013 |
0.317 |
|
2009 |
Wu J, Voit E. Integrative biological systems modeling: challenges and opportunities Frontiers of Computer Science in China. 3: 92-100. DOI: 10.1007/S11704-007-0011-9 |
0.622 |
|
2008 |
Alvarez-Vasquez F, Hannun YA, Voit EO. Dynamics of Positional Enrichment: Theoretical Development and Application to Carbon Labeling in Zymomonas mobilis. Biochemical Engineering Journal. 40: 157-174. PMID 19412323 DOI: 10.1016/J.Bej.2007.12.003 |
0.375 |
|
2008 |
Voit EO. Modelling metabolic networks using power-laws and S-systems. Essays in Biochemistry. 45: 29-40. PMID 18793121 DOI: 10.1042/Bse0450029 |
0.449 |
|
2008 |
Goel G, Chou IC, Voit EO. System estimation from metabolic time-series data. Bioinformatics (Oxford, England). 24: 2505-11. PMID 18772153 DOI: 10.1093/Bioinformatics/Btn470 |
0.804 |
|
2008 |
Qi Z, Miller GW, Voit EO. A mathematical model of presynaptic dopamine homeostasis: implications for schizophrenia. Pharmacopsychiatry. 41: S89-98. PMID 18756426 DOI: 10.1055/S-2008-1080936 |
0.614 |
|
2008 |
Voit EO, Qi Z, Miller GW. Steps of modeling complex biological systems. Pharmacopsychiatry. 41: S78-84. PMID 18756424 DOI: 10.1055/S-2008-1080911 |
0.666 |
|
2008 |
Qi Z, Miller GW, Voit EO. Computational systems analysis of dopamine metabolism. Plos One. 3: e2444. PMID 18568086 DOI: 10.1371/Journal.Pone.0002444 |
0.641 |
|
2008 |
Weitz JS, Mileyko Y, Joh RI, Voit EO. Collective decision making in bacterial viruses. Biophysical Journal. 95: 2673-80. PMID 18567629 DOI: 10.1529/Biophysj.108.133694 |
0.311 |
|
2008 |
del Rosario RCH, Mendoza E, Voit EO. Challenges in lin-log modelling of glycolysis in Lactococcus lactis Iet Systems Biology. 2: 136-149. PMID 18537454 DOI: 10.1049/Iet-Syb:20070030 |
0.409 |
|
2008 |
Vilela M, Chou IC, Vinga S, Vasconcelos AT, Voit EO, Almeida JS. Parameter optimization in S-system models. Bmc Systems Biology. 2: 35. PMID 18416837 DOI: 10.1186/1752-0509-2-35 |
0.742 |
|
2008 |
Garcia J, Shea J, Alvarez-Vasquez F, Qureshi A, Luberto C, Voit EO, Del Poeta M. Mathematical modeling of pathogenicity of Cryptococcus neoformans. Molecular Systems Biology. 4: 183. PMID 18414484 DOI: 10.1038/Msb.2008.17 |
0.355 |
|
2008 |
Feinendegen L, Hahnfeldt P, Schadt EE, Stumpf M, Voit EO. Systems biology and its potential role in radiobiology. Radiation and Environmental Biophysics. 47: 5-23. PMID 18087710 DOI: 10.1007/S00411-007-0146-8 |
0.333 |
|
2008 |
Polisetty PK, Gatzke EP, Voit EO. Yield optimization of regulated metabolic systems using deterministic branch-and-reduce methods. Biotechnology and Bioengineering. 99: 1154-69. PMID 18064703 DOI: 10.1002/Bit.21679 |
0.386 |
|
2008 |
Yin W, Voit EO. Construction and customization of stable oscillation models in biology Journal of Biological Systems. 16: 463-478. DOI: 10.1142/S0218339008002502 |
0.592 |
|
2007 |
Alvarez-Vasquez F, Sims KJ, Voit EO, Hannun YA. Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift. Theoretical Biology & Medical Modelling. 4: 42. PMID 17974024 DOI: 10.1186/1742-4682-4-42 |
0.719 |
|
2007 |
Sims KJ, Alvarez-Vasquez F, Voit EO, Hannun YA. A guide to biochemical systems modeling of sphingolipids for the biochemist. Methods in Enzymology. 432: 319-50. PMID 17954223 DOI: 10.1016/S0076-6879(07)32013-2 |
0.756 |
|
2007 |
Marin-Sanguino A, Voit EO, Gonzalez-Alcon C, Torres NV. Optimization of biotechnological systems through geometric programming. Theoretical Biology & Medical Modelling. 4: 38. PMID 17897440 DOI: 10.1186/1742-4682-4-38 |
0.365 |
|
2007 |
Vilela M, Borges CC, Vinga S, Vasconcelos AT, Santos H, Voit EO, Almeida JS. Automated smoother for the numerical decoupling of dynamics models. Bmc Bioinformatics. 8: 305. PMID 17711581 DOI: 10.1186/1471-2105-8-305 |
0.762 |
|
2007 |
Schwacke JH, Voit EO. Concentration-dependent effects on the rapid and efficient activation of the MAP kinase signaling cascade. Proteomics. 7: 890-9. PMID 17370267 DOI: 10.1002/Pmic.200600927 |
0.724 |
|
2007 |
Schwacke JH, Voit EO. The potential for signal integration and processing in interacting MAP kinase cascades. Journal of Theoretical Biology. 246: 604-20. PMID 17337011 DOI: 10.1016/J.Jtbi.2006.12.035 |
0.716 |
|
2007 |
Wang FS, Ko CL, Voit EO. Kinetic modeling using S-systems and lin-log approaches Biochemical Engineering Journal. 33: 238-247. DOI: 10.1016/J.Bej.2006.11.002 |
0.403 |
|
2006 |
Goel G, Chou IC, Voit EO. Biological systems modeling and analysis: a biomolecular technique of the twenty-first century. Journal of Biomolecular Techniques : Jbt. 17: 252-69. PMID 17028166 |
0.787 |
|
2006 |
Voit EO, Almeida J, Marino S, Lall R, Goel G, Neves AR, Santos H. Regulation of glycolysis in Lactococcus lactis: an unfinished systems biological case study. Systems Biology. 153: 286-98. PMID 16986630 DOI: 10.1049/ip-syb:20050087 |
0.818 |
|
2006 |
Marino S, Voit EO. An automated procedure for the extraction of metabolic network information from time series data. Journal of Bioinformatics and Computational Biology. 4: 665-91. PMID 16960969 DOI: 10.1142/S0219720006002259 |
0.724 |
|
2006 |
Chou IC, Martens H, Voit EO. Parameter estimation in biochemical systems models with alternating regression. Theoretical Biology & Medical Modelling. 3: 25. PMID 16854227 DOI: 10.1186/1742-4682-3-25 |
0.741 |
|
2006 |
Voit E, Neves AR, Santos H. The intricate side of systems biology. Proceedings of the National Academy of Sciences of the United States of America. 103: 9452-7. PMID 16766654 DOI: 10.1073/Pnas.0603337103 |
0.489 |
|
2006 |
Polisetty PK, Voit EO, Gatzke EP. Identification of metabolic system parameters using global optimization methods. Theoretical Biology & Medical Modelling. 3: 4. PMID 16441881 DOI: 10.1186/1742-4682-3-4 |
0.389 |
|
2005 |
Lall R, Voit EO. Parameter estimation in modulated, unbranched reaction chains within biochemical systems. Computational Biology and Chemistry. 29: 309-18. PMID 16213792 DOI: 10.1016/J.Compbiolchem.2005.08.001 |
0.81 |
|
2005 |
Mocek WT, Rudnicki R, Voit EO. Approximation of delays in biochemical systems Mathematical Biosciences. 198: 190-216. PMID 16181644 DOI: 10.1016/J.Mbs.2005.08.001 |
0.778 |
|
2005 |
Ervadi-Radhakrishnan A, Voit EO. Controllability of non-linear biochemical systems. Mathematical Biosciences. 196: 99-123. PMID 15982674 DOI: 10.1016/J.Mbs.2005.03.012 |
0.41 |
|
2005 |
Voit EO, Marino S, Lall R. Challenges for the identification of biological systems from in vivo time series data. In Silico Biology. 5: 83-92. PMID 15972008 |
0.801 |
|
2005 |
Schwacke JH, Voit EO. Computation and analysis of time-dependent sensitivities in Generalized Mass Action systems. Journal of Theoretical Biology. 236: 21-38. PMID 15967181 DOI: 10.1016/J.Jtbi.2005.02.013 |
0.752 |
|
2005 |
Alvarez-Vasquez F, Sims KJ, Cowart LA, Okamoto Y, Voit EO, Hannun YA. Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae. Nature. 433: 425-30. PMID 15674294 DOI: 10.1038/Nature03232 |
0.748 |
|
2005 |
He Q, Voit EO. Estimation and completion of survival data with piecewise linear models and S-distributions Journal of Statistical Computation and Simulation. 75: 287-305. DOI: 10.1080/00949650410001729418 |
0.501 |
|
2004 |
Veflingstad SR, Almeida J, Voit EO. Priming nonlinear searches for pathway identification. Theoretical Biology & Medical Modelling. 1: 8. PMID 15367330 DOI: 10.1186/1742-4682-1-8 |
0.791 |
|
2004 |
Voit EO, Alvarez-Vasquez F, Sims KJ. Analysis of dynamic labeling data. Mathematical Biosciences. 191: 83-99. PMID 15312745 DOI: 10.1016/J.Mbs.2004.04.004 |
0.732 |
|
2004 |
Schwacke JH, Voit EO. Improved methods for the mathematically controlled comparison of biochemical systems. Theoretical Biology & Medical Modelling. 1: 1. PMID 15285792 DOI: 10.1186/1742-4682-1-1 |
0.736 |
|
2004 |
Sims KJ, Spassieva SD, Voit EO, Obeid LM. Yeast sphingolipid metabolism: clues and connections. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 82: 45-61. PMID 15052327 DOI: 10.1139/O03-086 |
0.757 |
|
2004 |
Voit EO, Almeida J. Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinformatics (Oxford, England). 20: 1670-81. PMID 14988125 DOI: 10.1093/Bioinformatics/Bth140 |
0.417 |
|
2004 |
Alvarez-Vasquez F, Sims KJ, Hannun YA, Voit EO. Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models. Journal of Theoretical Biology. 226: 265-91. PMID 14643642 DOI: 10.1016/J.Jtbi.2003.08.010 |
0.76 |
|
2004 |
Voit EO. The dawn of a new era of metabolic systems analysis Drug Discovery Today: Biosilico. 2: 182-189. DOI: 10.1016/S1741-8364(04)02419-9 |
0.411 |
|
2004 |
Voit EO, Gatzke EP. Modeling of Metabolic Systems Using Global Optimization Methods Ifac Proceedings Volumes. 37: 929-934. DOI: 10.1016/S1474-6670(17)38853-5 |
0.427 |
|
2003 |
Almeida JS, Voit EO. Neural-network-based parameter estimation in S-system models of biological networks. Genome Informatics. International Conference On Genome Informatics. 14: 114-23. PMID 15706526 DOI: 10.11234/Gi1990.14.114 |
0.391 |
|
2003 |
Voit EO, Riley M. Extending knowledge of Escherichia coli metabolism by modeling and experiment. Genome Biology. 4: 235. PMID 14611652 DOI: 10.1186/Gb-2003-4-11-235 |
0.361 |
|
2003 |
Ferreira AE, Ponces Freire AM, Voit EO. A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose. The Biochemical Journal. 376: 109-21. PMID 12911334 DOI: 10.1042/Bj20030496 |
0.675 |
|
2003 |
Voit EO. Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis. Journal of Theoretical Biology. 223: 55-78. PMID 12782117 DOI: 10.1016/S0022-5193(03)00072-9 |
0.359 |
|
2003 |
Voit EO. Design principles and operating principles: the yin and yang of optimal functioning. Mathematical Biosciences. 182: 81-92. PMID 12547041 DOI: 10.1016/S0025-5564(02)00162-1 |
0.371 |
|
2002 |
Schwacke LH, Voit EO, Hansen LJ, Wells RS, Mitchum GB, Hohn AA, Fair PA. Probabilistic risk assessment of reproductive effects of polychlorinated biphenyls on bottlenose dolphins (Tursiops truncatus) from the Southeast United States Coast. Environmental Toxicology and Chemistry / Setac. 21: 2752-64. PMID 12463575 DOI: 10.1002/Etc.5620211232 |
0.743 |
|
2002 |
Voit EO. Models-of-data and models-of-processes in the post-genomic era. Mathematical Biosciences. 180: 263-74. PMID 12387927 DOI: 10.1016/S0025-5564(02)00115-3 |
0.36 |
|
2002 |
Voit EO. Metabolic modeling: a tool of drug discovery in the post-genomic era. Drug Discovery Today. 7: 621-8. PMID 12047873 DOI: 10.1016/S1359-6446(02)02280-8 |
0.407 |
|
2001 |
Voit EO, Signore MD. Assessment of effects of experimental imprecision on optimized biochemical systems Biotechnology and Bioengineering. 74: 443-448. PMID 11427946 DOI: 10.1002/Bit.1135 |
0.372 |
|
2000 |
Voit EO, Radivoyevitch T. Biochemical systems analysis of genome-wide expression data Bioinformatics. 16: 1023-1037. PMID 11159314 DOI: 10.1093/Bioinformatics/16.11.1023 |
0.38 |
|
2000 |
Voit EO. Canonical modeling: Review of concepts with emphasis on environmental health Environmental Health Perspectives. 108: 895-909. PMID 11035999 DOI: 10.1289/Ehp.00108S5895 |
0.428 |
|
2000 |
Voit EO. Utility of Biochemical Systems Theory for the analysis of metabolic effects from low-dose chemical exposure Risk Analysis. 20: 393-402. PMID 10949418 DOI: 10.1111/0272-4332.203038 |
0.382 |
|
2000 |
Voit EO, Sorribas A. Computer modeling of dynamically changing distributions of random variables Mathematical and Computer Modelling. 31: 217-225. DOI: 10.1016/S0895-7177(00)00041-8 |
0.347 |
|
2000 |
Thompson RE, Voit EO, Scott GI. A probabilistic model for predicting distributions of PAH ratios between oysters and marine sediments Ecological Modelling. 135: 231-242. DOI: 10.1016/S0304-3800(00)00367-7 |
0.317 |
|
1998 |
Curto R, Voit EO, Sorribas A, Cascante M. Mathematical models of purine metabolism in man Mathematical Biosciences. 151: 1-49. PMID 9664759 DOI: 10.1016/S0025-5564(98)10001-9 |
0.818 |
|
1998 |
Voit EO, Ferreira AEN. Buffering in models of integrated biochemical systems Journal of Theoretical Biology. 191: 429-437. DOI: 10.1006/Jtbi.1997.0605 |
0.37 |
|
1997 |
Voit EO, Knapp RG. Derivation of the linear-logistic model and Cox's proportional hazard model from a canonical system description. Statistics in Medicine. 16: 1705-29. PMID 9265695 DOI: 10.1002/(Sici)1097-0258(19970815)16:15<1705::Aid-Sim599>3.0.Co;2-7 |
0.392 |
|
1997 |
Curto R, Voit EO, Sorribas A, Cascante M. Validation and steady-state analysis of a power-law model of purine metabolism in man Biochemical Journal. 324: 761-775. PMID 9210399 DOI: 10.1042/Bj3240761 |
0.818 |
|
1997 |
Torres NV, Voit EO, Glez-Alcón C, Rodríguez F. An indirect optimization method for biochemical systems: Description of method and application to the maximization of the rate of ethanol, glycerol, and carbohydrate production in Saccharomyces cerevisiae Biotechnology and Bioengineering. 55: 758-772. DOI: 10.1002/(Sici)1097-0290(19970905)55:5<758::Aid-Bit6>3.0.Co;2-A |
0.302 |
|
1996 |
Berg PH, Voit EO, White RL. A pharmacodynamic model for the action of the antibiotic imipenem on Pseudomonas aeruginosa populations in vitro. Bulletin of Mathematical Biology. 58: 923-38. PMID 8837524 DOI: 10.1016/0092-8240(96)00017-1 |
0.338 |
|
1996 |
Sands PJ, Voit EO. Flux-based estimation of parameters in S-systems Ecological Modelling. 93: 75-88. DOI: 10.1016/0304-3800(95)00215-4 |
0.33 |
|
1996 |
Voit EO, Sands PJ. Modeling forest growth I. Canonical approach Ecological Modelling. 86: 51-71. DOI: 10.1016/0304-3800(94)00192-8 |
0.365 |
|
1996 |
Torres NV, Voit EO, González-Alcón C. Optimization of nonlinear biotechnological processes with linear programming: Application to citric acid production by Aspergillus niger Biotechnology and Bioengineering. 49: 247-258. DOI: 10.1002/(Sici)1097-0290(19960205)49:3<247::Aid-Bit2>3.0.Co;2-K |
0.406 |
|
1995 |
Voit EO, Leonard Balthis W, Holser RA. Hierarchical Monte Carlo modeling with S-distributions: Concepts and illustrative analysis of mercury contamination in king mackerel Environment International. 21: 627-635. DOI: 10.1016/0160-4120(95)00067-U |
0.304 |
|
1995 |
Yu S, Voit EO. A Simple, Flexible Failure Model Biometrical Journal. 37: 595-609. DOI: 10.1002/Bimj.4710370509 |
0.785 |
|
1994 |
Voit EO, Yu S. The S-Distribution: Approximation of Discrete Distributions Biometrical Journal. 36: 205-219. DOI: 10.1002/Bimj.4710360215 |
0.759 |
|
1993 |
Voit EO. S-system modelling of complex systems with chaotic input Environmetrics. 4: 153-186. DOI: 10.1002/Env.3170040203 |
0.395 |
|
1992 |
Voit EO. Symmetries of S-systems Mathematical Biosciences. 109: 19-37. PMID 1591448 DOI: 10.1016/0025-5564(92)90050-7 |
0.315 |
|
1992 |
Voit EO. Optimization in integrated biochemical systems Biotechnology and Bioengineering. 40: 572-582. DOI: 10.1002/Bit.260400504 |
0.358 |
|
1989 |
Voit EO. New nonlinear methodologies for modeling molecular and cellular systems Ifac Proceedings Series. 217-228. DOI: 10.1016/S1474-6670(17)57559-X |
0.391 |
|
1988 |
Voit EO. Recasting nonlinear models as S-systems Mathematical and Computer Modelling. 11: 140-145. DOI: 10.1016/0895-7177(88)90469-4 |
0.347 |
|
1987 |
Voit EO, Savageau MA. Accuracy of alternative representations for integrated biochemical systems Biochemistry. 26: 6869-6880. PMID 3427048 DOI: 10.1021/Bi00395A042 |
0.587 |
|
1987 |
Savageau MA, Voit EO. Recasting nonlinear differential equations as S-systems: a canonical nonlinear form Mathematical Biosciences. 87: 83-115. DOI: 10.1016/0025-5564(87)90035-6 |
0.577 |
|
1987 |
Savageau MA, Voit EO, Irvine DH. Biochemical systems theory and metabolic control theory: 2. the role of summation and connectivity relationships Mathematical Biosciences. 86: 147-169. DOI: 10.1016/0025-5564(87)90008-3 |
0.599 |
|
1987 |
Savageau MA, Voit EO, Irvine DH. Biochemical systems theory and metabolic control theory: 1. fundamental similarities and differences Mathematical Biosciences. 86: 127-145. DOI: 10.1016/0025-5564(87)90007-1 |
0.606 |
|
1986 |
Voit EO, Savageau MA. Equivalence between S-systems and Volterra systems Mathematical Biosciences. 78: 47-55. DOI: 10.1016/0025-5564(86)90030-1 |
0.576 |
|
1985 |
Voit EO. Cell cycles and growth laws: the CCC model Journal of Theoretical Biology. 114: 589-599. PMID 4021508 DOI: 10.1016/S0022-5193(85)80045-X |
0.33 |
|
1984 |
Voit EO, Savageau MA. Analytical solutions to a generalized growth equation Journal of Mathematical Analysis and Applications. 103: 380-386. DOI: 10.1016/0022-247X(84)90135-5 |
0.564 |
|
1983 |
Voit EO, Dick G. Growth of cell populations with arbitrarily distributed cycle durations. II. extended model for correlated cycle durations of mother and daughter cells Mathematical Biosciences. 66: 247-262. DOI: 10.1016/0025-5564(83)90091-3 |
0.31 |
|
1983 |
Voit EO, Dick G. Growth of cell populations with arbitrarily distributed cycle durations. I. basic model Mathematical Biosciences. 66: 229-246. DOI: 10.1016/0025-5564(83)90090-1 |
0.309 |
|
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