Yan Y. Tseng, Ph.D. - Publications

Affiliations: 
2006 University of Illinois at Chicago, Chicago, IL, United States 
Area:
General Biophysics, Bioinformatics Biology

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Tseng YY, Li WH. PSC: protein surface classification. Nucleic Acids Research. 40: W435-9. PMID 22669905 DOI: 10.1093/nar/gks495  1
2012 Tseng YY, Li WH. Classification of protein functional surfaces using structural characteristics. Proceedings of the National Academy of Sciences of the United States of America. 109: 1170-5. PMID 22238424 DOI: 10.1073/pnas.1119684109  1
2011 Tseng YY, Li WH. Evolutionary approach to predicting the binding site residues of a protein from its primary sequence. Proceedings of the National Academy of Sciences of the United States of America. 108: 5313-8. PMID 21402946 DOI: 10.1073/pnas.1102210108  1
2010 Tseng YY, Chen ZJ, Li WH. fPOP: footprinting functional pockets of proteins by comparative spatial patterns. Nucleic Acids Research. 38: D288-95. PMID 19880384 DOI: 10.1093/nar/gkp900  1
2009 Adamian L, Gussin HA, Tseng YY, Muni NJ, Feng F, Qian H, Pepperberg DR, Liang J. Structural model of rho1 GABAC receptor based on evolutionary analysis: Testing of predicted protein-protein interactions involved in receptor assembly and function. Protein Science : a Publication of the Protein Society. 18: 2371-83. PMID 19768800 DOI: 10.1002/pro.247  1
2009 Tseng YY, Dupree C, Chen ZJ, Li WH. SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns. Nucleic Acids Research. 37: W384-9. PMID 19406922 DOI: 10.1093/nar/gkp308  1
2009 Tseng YY, Dundas J, Liang J. Predicting protein function and binding profile via matching of local evolutionary and geometric surface patterns. Journal of Molecular Biology. 387: 451-64. PMID 19154742 DOI: 10.1016/j.jmb.2008.12.072  1
2008 Liang J, Tseng YY, Dundas J, Binkowski TA, Joachimiak A, Ouyang Z, Adamian L. Chapter 4. Predicting and characterizing protein functions through matching geometric and evolutionary patterns of binding surfaces. Advances in Protein Chemistry and Structural Biology. 75: 107-41. PMID 20731991 DOI: 10.1016/S0065-3233(07)75004-0  1
2007 Tseng YY, Liang J. Predicting enzyme functional surfaces and locating key residues automatically from structures. Annals of Biomedical Engineering. 35: 1037-42. PMID 17294116 DOI: 10.1007/s10439-006-9241-2  1
2006 Tseng YY, Liang J. Automated method for predicting enzyme functional surfaces and locating key residues with accuracy and specificity. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 4552-5. PMID 17947099 DOI: 10.1109/IEMBS.2006.259540  1
2006 Adamian L, Ouyang Z, Tseng YY, Liang J. Evolutionary patterns of retinal-binding pockets of type I rhodopsins and their functions. Photochemistry and Photobiology. 82: 1426-35. PMID 16922602 DOI: 10.1562/2006-02-14-RA-802  1
2006 Tseng YY, Liang J. Estimation of amino acid residue substitution rates at local spatial regions and application in protein function inference: a Bayesian Monte Carlo approach. Molecular Biology and Evolution. 23: 421-36. PMID 16251508 DOI: 10.1093/molbev/msj048  1
2004 Tseng YY, Liang J. Are residues in a protein folding nucleus evolutionarily conserved? Journal of Molecular Biology. 335: 869-80. PMID 14698285  1
2004 Stitziel NO, Binkowski TA, Tseng YY, Kasif S, Liang J. topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. Nucleic Acids Research. 32: D520-2. PMID 14681472 DOI: 10.1093/nar/gkh104  1
2003 Stitziel NO, Tseng YY, Pervouchine D, Goddeau D, Kasif S, Liang J. Structural location of disease-associated single-nucleotide polymorphisms. Journal of Molecular Biology. 327: 1021-30. PMID 12662927  1
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