| Year |
Citation |
Score |
| 2022 |
Zhao H, Hartono SR, de Vera KMF, Yu Z, Satchi K, Zhao T, Sciammas R, Sanz L, Chédin F, Barlow J. Senataxin and RNase H2 act redundantly to suppress genome instability during class switch recombination. Elife. 11. PMID 36542058 DOI: 10.7554/eLife.78917 |
0.348 |
|
| 2022 |
Jasoliya M, Gu J, AlOlaby RR, Durbin-Johnson B, Chedin F, Tassone F. Profiling Genome-Wide DNA Methylation in Children with Autism Spectrum Disorder and in Children with Fragile X Syndrome. Genes. 13. PMID 36292679 DOI: 10.3390/genes13101795 |
0.393 |
|
| 2022 |
Miller HE, Montemayor D, Abdul J, Vines A, Levy SA, Hartono SR, Sharma K, Frost B, Chédin F, Bishop AJR. Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions. Nucleic Acids Research. PMID 35758606 DOI: 10.1093/nar/gkac537 |
0.3 |
|
| 2022 |
St Germain CP, Zhao H, Sinha V, Sanz LA, Chédin F, Barlow JH. Genomic patterns of transcription-replication interactions in mouse primary B cells. Nucleic Acids Research. 50: 2051-2073. PMID 35100392 DOI: 10.1093/nar/gkac035 |
0.404 |
|
| 2021 |
Sanz LA, Castillo-Guzman D, Chédin F. Mapping R-Loops and RNA:DNA Hybrids with S9.6-Based Immunoprecipitation Methods. Journal of Visualized Experiments : Jove. PMID 34515688 DOI: 10.3791/62455 |
0.416 |
|
| 2021 |
Giuliani V, Miller MA, Liu CY, Hartono SR, Class CA, Bristow CA, Suzuki E, Sanz LA, Gao G, Gay JP, Feng N, Rose JL, Tomihara H, Daniele JR, Peoples MD, ... ... Chedin F, et al. PRMT1-dependent regulation of RNA metabolism and DNA damage response sustains pancreatic ductal adenocarcinoma. Nature Communications. 12: 4626. PMID 34330913 DOI: 10.1038/s41467-021-24798-y |
0.326 |
|
| 2021 |
Castillo-Guzman D, Chédin F. Defining R-loop classes and their contributions to genome instability. Dna Repair. 106: 103182. PMID 34303066 DOI: 10.1016/j.dnarep.2021.103182 |
0.417 |
|
| 2021 |
Crossley MP, Brickner JR, Song C, Zar SMT, Maw SS, Chédin F, Tsai MS, Cimprich KA. Catalytically inactive, purified RNase H1: A specific and sensitive probe for RNA-DNA hybrid imaging. The Journal of Cell Biology. 220. PMID 34232287 DOI: 10.1083/jcb.202101092 |
0.307 |
|
| 2020 |
Promonet A, Padioleau I, Liu Y, Sanz L, Biernacka A, Schmitz AL, Skrzypczak M, Sarrazin A, Mettling C, Rowicka M, Ginalski K, Chedin F, Chen CL, Lin YL, Pasero P. Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites. Nature Communications. 11: 3940. PMID 32769985 DOI: 10.1038/S41467-020-17858-2 |
0.573 |
|
| 2020 |
Richard P, Feng S, Tsai YL, Li W, Rinchetti P, Muhith U, Irizarry-Cole J, Stolz K, Sanz LA, Hartono S, Hoque M, Tadesse S, Seitz H, Lotti F, Hirano M, et al. SETX (senataxin), the helicase mutated in AOA2 and ALS4, functions in autophagy regulation. Autophagy. PMID 32686621 DOI: 10.1080/15548627.2020.1796292 |
0.434 |
|
| 2020 |
Malig M, Chedin F. Characterization of R-Loop Structures Using Single-Molecule R-Loop Footprinting and Sequencing. Methods in Molecular Biology (Clifton, N.J.). 2161: 209-228. PMID 32681515 DOI: 10.1007/978-1-0716-0680-3_15 |
0.524 |
|
| 2020 |
Alecki C, Chiwara V, Sanz LA, Grau D, Arias Pérez O, Boulier EL, Armache KJ, Chédin F, Francis NJ. RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2. Nature Communications. 11: 1781. PMID 32286294 DOI: 10.1038/S41467-020-15609-X |
0.522 |
|
| 2020 |
Chedin F, Benham CJ. Emerging roles for R-loop structures in the management of topological stress. The Journal of Biological Chemistry. PMID 32107311 DOI: 10.1074/Jbc.Rev119.006364 |
0.57 |
|
| 2020 |
Malig M, Hartono SR, Giafaglione JM, Sanz LA, Chedin F. Ultra-Deep Coverage Single-Molecule R-loop Footprinting Reveals Principles of R-loop Formation. Journal of Molecular Biology. PMID 32105733 DOI: 10.1016/J.Jmb.2020.02.014 |
0.522 |
|
| 2019 |
Jasoliya M, Sacca F, Sahdeo S, Chedin F, Pane C, Brescia Morra V, Filla A, Pook M, Cortopassi G. Dimethyl fumarate dosing in humans increases frataxin expression: A potential therapy for Friedreich's Ataxia. Plos One. 14: e0217776. PMID 31158268 DOI: 10.1371/Journal.Pone.0217776 |
0.304 |
|
| 2019 |
Carrasco-Salas Y, Malapert A, Sulthana S, Molcrette B, Chazot-Franguiadakis L, Bernard P, Chédin F, Faivre-Moskalenko C, Vanoosthuyse V. The extruded non-template strand determines the architecture of R-loops. Nucleic Acids Research. PMID 31066439 DOI: 10.1093/Nar/Gkz341 |
0.495 |
|
| 2019 |
Sanz LA, Chédin F. High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing. Nature Protocols. PMID 31053798 DOI: 10.1038/S41596-019-0159-1 |
0.532 |
|
| 2019 |
Stolz R, Sulthana S, Hartono SR, Malig M, Benham CJ, Chedin F. Interplay between DNA sequence and negative superhelicity drives R-loop structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 30850542 DOI: 10.1073/Pnas.1819476116 |
0.558 |
|
| 2019 |
Giuliani V, Carugo A, Miller M, Sanz L, Liu C, Bristow CA, Suzuki E, Class CA, Hartono SR, Gao G, Feng N, Vangamudi B, Marszalek JR, Kovacs J, Francesco MED, ... Chedin F, et al. Abstract 277: Inhibition of protein arginine methylation alters RNA metabolism and DNA damage response providing a new therapeutic strategy in pancreatic ductal adenocarcinoma Cancer Research. 79: 277-277. DOI: 10.1158/1538-7445.Am2019-277 |
0.498 |
|
| 2018 |
Manzo SG, Hartono SR, Sanz LA, Marinello J, De Biasi S, Cossarizza A, Capranico G, Chedin F. DNA Topoisomerase I differentially modulates R-loops across the human genome. Genome Biology. 19: 100. PMID 30060749 DOI: 10.1186/S13059-018-1478-1 |
0.579 |
|
| 2018 |
Zhang X, Chiang HC, Wang Y, Zhang C, Smith S, Zhao X, Nair SJ, Michalek J, Jatoi I, Lautner M, Oliver B, Wang H, Petit A, Soler T, Brunet J, ... ... Chedin F, et al. Author Correction: Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis. Nature Communications. 9: 16211. PMID 29600804 DOI: 10.1038/Ncomms16211 |
0.336 |
|
| 2017 |
Hartono SR, Malapert A, Legros P, Bernard P, Chédin F, Vanoosthuyse V. The Affinity of the S9.6 Antibody for Double-Stranded RNAs Impacts the Accurate Mapping of R-Loops in Fission Yeast. Journal of Molecular Biology. PMID 29289567 DOI: 10.1016/J.Jmb.2017.12.016 |
0.471 |
|
| 2017 |
Chédin F. Hybrids in the chromatin. Nature Plants. PMID 28848239 DOI: 10.1038/S41477-017-0011-Y |
0.527 |
|
| 2017 |
Zhang X, Chiang HC, Wang Y, Zhang C, Smith S, Zhao X, Nair SJ, Michalek J, Jatoi I, Lautner M, Oliver B, Wang H, Petit A, Soler T, Brunet J, ... ... Chedin F, et al. Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis. Nature Communications. 8: 15908. PMID 28649985 DOI: 10.1038/Ncomms15908 |
0.454 |
|
| 2017 |
Sagie S, Toubiana S, Hartono SR, Katzir H, Tzur-Gilat A, Havazelet S, Francastel C, Velasco G, Chédin F, Selig S. Telomeres in ICF syndrome cells are vulnerable to DNA damage due to elevated DNA:RNA hybrids. Nature Communications. 8: 14015. PMID 28117327 DOI: 10.1038/Ncomms14015 |
0.435 |
|
| 2016 |
Chédin F. Nascent Connections: R-Loops and Chromatin Patterning. Trends in Genetics : Tig. PMID 27793359 DOI: 10.1016/J.Tig.2016.10.002 |
0.522 |
|
| 2016 |
Stork CT, Bocek M, Crossley MP, Sollier J, Sanz LA, Chédin F, Swigut T, Cimprich KA. Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage. Elife. 5. PMID 27552054 DOI: 10.7554/Elife.17548 |
0.49 |
|
| 2016 |
Sanz LA, Hartono SR, Lim YW, Steyaert S, Rajpurkar A, Ginno PA, Xu X, Chédin F. Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals. Molecular Cell. PMID 27373332 DOI: 10.1016/J.Molcel.2016.05.032 |
0.77 |
|
| 2016 |
Stork CT, Bocek M, Crossley MP, Sollier J, Sanz LA, Chédin F, Swigut T, Cimprich KA. Author response: Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage Elife. DOI: 10.7554/Elife.17548.041 |
0.517 |
|
| 2015 |
Hartono SR, Korf IF, Chédin F. GC skew is a conserved property of unmethylated CpG island promoters across vertebrates. Nucleic Acids Research. 43: 9729-41. PMID 26253743 DOI: 10.1093/Nar/Gkv811 |
0.611 |
|
| 2015 |
Lim YW, Sanz LA, Xu X, Hartono SR, Chédin F. Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome. Elife. 4. PMID 26182405 DOI: 10.7554/Elife.08007 |
0.507 |
|
| 2015 |
Lim YW, Sanz LA, Xu X, Hartono SR, Chédin F. Author response: Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi–Goutières syndrome Elife. DOI: 10.7554/Elife.08007.019 |
0.505 |
|
| 2014 |
Loomis EW, Sanz LA, Chédin F, Hagerman PJ. Transcription-associated R-loop formation across the human FMR1 CGG-repeat region. Plos Genetics. 10: e1004294. PMID 24743386 DOI: 10.1371/Journal.Pgen.1004294 |
0.603 |
|
| 2014 |
Yang Y, McBride KM, Hensley S, Lu Y, Chedin F, Bedford MT. Arginine methylation facilitates the recruitment of TOP3B to chromatin to prevent R loop accumulation. Molecular Cell. 53: 484-97. PMID 24507716 DOI: 10.1016/J.Molcel.2014.01.011 |
0.567 |
|
| 2013 |
Fagan RL, Wu M, Chédin F, Brenner C. An ultrasensitive high throughput screen for DNA methyltransferase 1-targeted molecular probes. Plos One. 8: e78752. PMID 24236046 DOI: 10.1371/Journal.Pone.0078752 |
0.441 |
|
| 2013 |
Gordon CA, Hartono SR, Chédin F. Inactive DNMT3B splice variants modulate de novo DNA methylation. Plos One. 8: e69486. PMID 23894490 DOI: 10.1371/Journal.Pone.0069486 |
0.767 |
|
| 2013 |
Ginno PA, Lim YW, Lott PL, Korf I, Chédin F. GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination. Genome Research. 23: 1590-600. PMID 23868195 DOI: 10.1101/Gr.158436.113 |
0.791 |
|
| 2012 |
Ginno PA, Lott PL, Christensen HC, Korf I, Chédin F. R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters. Molecular Cell. 45: 814-25. PMID 22387027 DOI: 10.1016/J.Molcel.2012.01.017 |
0.809 |
|
| 2011 |
Moarefi AH, Chédin F. ICF syndrome mutations cause a broad spectrum of biochemical defects in DNMT3B-mediated de novo DNA methylation. Journal of Molecular Biology. 409: 758-72. PMID 21549127 DOI: 10.1016/J.Jmb.2011.04.050 |
0.724 |
|
| 2011 |
Chédin F. The DNMT3 family of mammalian de novo DNA methyltransferases. Progress in Molecular Biology and Translational Science. 101: 255-85. PMID 21507354 DOI: 10.1016/B978-0-12-387685-0.00007-X |
0.617 |
|
| 2011 |
Nady N, Lemak A, Walker JR, Avvakumov GV, Kareta MS, Achour M, Xue S, Duan S, Allali-Hassani A, Zuo X, Wang YX, Bronner C, Chédin F, Arrowsmith CH, Dhe-Paganon S. Recognition of multivalent histone states associated with heterochromatin by UHRF1 protein. The Journal of Biological Chemistry. 286: 24300-11. PMID 21489993 DOI: 10.1074/Jbc.M111.234104 |
0.506 |
|
| 2010 |
Bronner C, Fuhrmann G, Chédin FL, Macaluso M, Dhe-Paganon S. UHRF1 Links the Histone code and DNA Methylation to ensure Faithful Epigenetic Memory Inheritance. Genetics & Epigenetics. 2009: 29-36. PMID 21643543 |
0.4 |
|
| 2010 |
Wienholz BL, Kareta MS, Moarefi AH, Gordon CA, Ginno PA, Chédin F. DNMT3L modulates significant and distinct flanking sequence preference for DNA methylation by DNMT3A and DNMT3B in vivo. Plos Genetics. 6: e1001106. PMID 20838592 DOI: 10.1371/Journal.Pgen.1001106 |
0.63 |
|
| 2009 |
El-Maarri O, Kareta MS, Mikeska T, Becker T, Diaz-Lacava A, Junen J, Nüsgen N, Behne F, Wienker T, Waha A, Oldenburg J, Chédin F. A systematic search for DNA methyltransferase polymorphisms reveals a rare DNMT3L variant associated with subtelomeric hypomethylation. Human Molecular Genetics. 18: 1755-68. PMID 19246518 DOI: 10.1093/Hmg/Ddp088 |
0.593 |
|
| 2009 |
Bronner C, Fuhrmann G, Chédin FL, Macaluso M, Dhe-Paganon S. UHRF1 Links the Histone Code and DNA Methylation to Ensure Faithful Epigenetic Memory Inheritance Genetics & Epigenetics. 2: GEG.S3992. DOI: 10.4137/GEG.S3992 |
0.487 |
|
| 2008 |
Nady N, Min J, Kareta MS, Chédin F, Arrowsmith CH. A SPOT on the chromatin landscape? Histone peptide arrays as a tool for epigenetic research. Trends in Biochemical Sciences. 33: 305-13. PMID 18538573 DOI: 10.1016/J.Tibs.2008.04.014 |
0.364 |
|
| 2006 |
Kareta MS, Botello ZM, Ennis JJ, Chou C, Chédin F. Reconstitution and mechanism of the stimulation of de novo methylation by human DNMT3L. The Journal of Biological Chemistry. 281: 25893-902. PMID 16829525 DOI: 10.1074/Jbc.M603140200 |
0.555 |
|
| 2006 |
Chédin F, Handa N, Dillingham MS, Kowalczykowski SC. The addAB helicase/nuclease forms a stable complex with its cognate χ sequence during translocation Journal of Biological Chemistry. 281: 18610-18617. PMID 16632468 DOI: 10.1074/Jbc.M600882200 |
0.391 |
|
| 2005 |
Chen ZX, Mann JR, Hsieh CL, Riggs AD, Chédin F. Physical and functional interactions between the human DNMT3L protein and members of the de novo methyltransferase family. Journal of Cellular Biochemistry. 95: 902-17. PMID 15861382 DOI: 10.1002/Jcb.20447 |
0.44 |
|
| 2003 |
Yu K, Chedin F, Hsieh CL, Wilson TE, Lieber MR. R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells. Nature Immunology. 4: 442-51. PMID 12679812 DOI: 10.1038/Ni919 |
0.472 |
|
| 2002 |
Chedin F, Lieber MR, Hsieh CL. The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a. Proceedings of the National Academy of Sciences of the United States of America. 99: 16916-21. PMID 12481029 DOI: 10.1073/Pnas.262443999 |
0.573 |
|
| 2002 |
Chédin F, Kowalczykowski SC. A novel family of regulated helicases/nucleases from Gram-positive bacteria: Insights into the initiation of DNA recombination Molecular Microbiology. 43: 823-834. PMID 11929535 DOI: 10.1046/J.1365-2958.2002.02785.X |
0.443 |
|
| 1998 |
Chédin F, Noirot P, Biaudet V, Ehrlich SD. A five-nucleotide sequence protects DNA from exonucleolytic degradation by AddAB, the RecBCD analogue of Bacillus subtilis Molecular Microbiology. 29: 1369-1377. PMID 9781875 DOI: 10.1046/J.1365-2958.1998.01018.X |
0.449 |
|
| 1998 |
Chédin F, Seitz EM, Kowalczykowski SC. Novel homologs of replication protein A in archaea: implications for the evolution of ssDNA-binding proteins. Trends in Biochemical Sciences. 23: 273-7. PMID 9757822 DOI: 10.1016/S0968-0004(98)01243-2 |
0.366 |
|
| 1998 |
Pujol C, Chédin F, Ehrlich SD, Jannière L. Inhibition of a naturally occurring rolling-circle replicon in derivatives of the theta-replicating plasmid pIP501 Molecular Microbiology. 29: 709-718. PMID 9723911 DOI: 10.1046/J.1365-2958.1998.00940.X |
0.435 |
|
| 1997 |
Tracy RB, Chédin F, Kowalczykowski SC. The recombination hot spot chi is embedded within islands of preferred DNA pairing sequences in the E. coli genome. Cell. 90: 205-6. PMID 9244294 DOI: 10.1016/S0092-8674(00)80328-1 |
0.441 |
|
| 1994 |
Chedin F, Dervyn E, Dervyn R, Ehrlich SD, Noirot P. Frequency of deletion formation decreases exponentially with distance between short direct repeats Molecular Microbiology. 12: 561-569. PMID 7934879 DOI: 10.1111/J.1365-2958.1994.Tb01042.X |
0.348 |
|
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