Todd D. Lillian, Ph.D. - Publications

Affiliations: 
2010 University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
General Biophysics, Mechanical Engineering

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ivenso ID, Lillian TD. Simulation of DNA Supercoil Relaxation. Biophysical Journal. 110: 2176-84. PMID 27224483 DOI: 10.1016/J.Bpj.2016.03.041  0.88
2014 Ivenso ID, Lillian TD. Brownian dynamics simulation of the dynamics of stretched DNA Proceedings of the Asme Design Engineering Technical Conference. 6. DOI: 10.1115/DETC201435487  0.88
2013 Hirsh AD, Taranova M, Lionberger TA, Lillian TD, Andricioaei I, Perkins NC. Structural ensemble and dynamics of toroidal-like DNA shapes in bacteriophage ϕ29 exit cavity. Biophysical Journal. 104: 2058-67. PMID 23663849 DOI: 10.1016/J.Bpj.2013.03.032  0.88
2013 Hirsh AD, Lillian TD, Lionberger TA, Taranova M, Andricioaei I, Perkins NC. A model for highly strained DNA compressed inside a protein cavity Journal of Computational and Nonlinear Dynamics. 8. DOI: 10.1115/1.4007535  0.88
2012 Haeusler AR, Goodson KA, Lillian TD, Wang X, Goyal S, Perkins NC, Kahn JD. FRET studies of a landscape of Lac repressor-mediated DNA loops. Nucleic Acids Research. 40: 4432-45. PMID 22307389 DOI: 10.1093/Nar/Gks019  0.88
2011 Lionberger TA, Demurtas D, Witz G, Dorier J, Lillian T, Meyhöfer E, Stasiak A. Cooperative kinking at distant sites in mechanically stressed DNA. Nucleic Acids Research. 39: 9820-32. PMID 21917856 DOI: 10.1093/Nar/Gkr666  0.88
2011 Hirsh AD, Lillian TD, Lionberger TA, Perkins NC. DNA modeling reveals an extended lac repressor conformation in classic in vitro binding assays. Biophysical Journal. 101: 718-26. PMID 21806940 DOI: 10.1016/J.Bpj.2011.06.040  0.88
2011 Lillian TD, Taranova M, Wereszczynski J, Andricioaei I, Perkins NC. A multiscale dynamic model of DNA supercoil relaxation by topoisomerase IB. Biophysical Journal. 100: 2016-23. PMID 21504738 DOI: 10.1016/J.Bpj.2011.03.003  0.88
2011 Hirsh AD, Lillian TD, Perkins NC. A model for highly strained DNA in a cavity Proceedings of the Asme Design Engineering Technical Conference. 4: 795-803. DOI: 10.1115/DETC2011-48711  0.88
2011 Lillian TD. An elastic rod representation for the LacI-DNA loop complex Proceedings of the Asme Design Engineering Technical Conference. 4: 713-719. DOI: 10.1115/DETC2011-47407  0.88
2011 Lillian TD, Perkins NC. Electrostatics and self-contact in an elastic rod approximation for DNA Journal of Computational and Nonlinear Dynamics. 6. DOI: 10.1115/1.4002267  0.88
2010 Lillian TD, Perkins NC. Electrostatics and self contact in an elastic rod approximation for DNA Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference 2009, Detc2009. 4: 1447-1455. DOI: 10.1115/1.4002267  0.88
2008 Lillian TD, Goyal S, Kahn JD, Meyhöfer E, Perkins NC. Computational analysis of looping of a large family of highly bent DNA by LacI. Biophysical Journal. 95: 5832-42. PMID 18931251 DOI: 10.1529/Biophysj.108.142471  0.88
2008 Lillian TD, Perkins NC, Goyal S. Computational elastic rod model applied to DNA looping 2007 Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, Detc2007. 5: 1449-1456. DOI: 10.1115/DETC2007-34956  0.88
2007 Goyal S, Lillian T, Blumberg S, Meiners JC, Meyhöfer E, Perkins NC. Intrinsic curvature of DNA influences LacR-mediated looping. Biophysical Journal. 93: 4342-59. PMID 17766355 DOI: 10.1529/Biophysj.107.112268  0.88
2007 Wilson DP, Lillian T, Goyal S, Tkachenko AV, Perkins NC, Mieiners JC. Understanding the role of thermal fluctuations in DNA looping Proceedings of Spie - the International Society For Optical Engineering. 6602. DOI: 10.1117/12.724717  0.88
2005 Cannon BR, Lillian TD, Magleby SP, Howell LL, Linford MR. A compliant end-effector for microscribing Precision Engineering. 29: 86-94. DOI: 10.1016/J.Precisioneng.2004.05.006  0.88
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