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Todd D. Lillian, Ph.D. - Publications

Affiliations: 
2010 University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
General Biophysics, Mechanical Engineering
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34/36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Babamohammadi S, Lillian TD. Traveling salesman finds random walk - a curve reconstruction algorithm for supercoiled DNA. Biophysical Journal. PMID 33217387 DOI: 10.1016/j.bpj.2020.10.044  0.526
2019 Lillian TD, Babamohammadi S. An Algorithm for Reconstructing the Dynamics of Supercoiled DNA Biophysical Journal. 116: 501a. DOI: 10.1016/J.Bpj.2018.11.2702  0.54
2016 Ivenso ID, Lillian TD. Simulation of DNA Supercoil Relaxation. Biophysical Journal. 110: 2176-84. PMID 27224483 DOI: 10.1016/J.Bpj.2016.03.041  0.639
2015 Ivenso ID, Lillian TD. Brownian Dynamics Study of DNA Supercoil Relaxation Biophysical Journal. 108: 233a-234a. DOI: 10.1016/J.Bpj.2014.11.1290  0.722
2015 Lillian TD, Ivenso I, Bell D, Polk J. Supercoil Diffusion along Stretched DNA by Brownian Dynamics Biophysical Journal. 108: 231a. DOI: 10.1016/J.Bpj.2014.11.1276  0.682
2014 Ivenso ID, Lillian TD. Brownian dynamics simulation of the dynamics of stretched DNA Proceedings of the Asme Design Engineering Technical Conference. 6. DOI: 10.1115/DETC201435487  0.455
2014 Ivenso ID, Lillian T. Modeling the Relaxation of DNA Supercoils Biophysical Journal. 106: 277a-278a. DOI: 10.1016/J.Bpj.2013.11.1625  0.731
2014 Lillian TD, Bell D, Polk J. Supercoil Dynamics along Stretched DNA by Brownian Dynamics Biophysical Journal. 106: 277a. DOI: 10.1016/J.Bpj.2013.11.1624  0.656
2013 Hirsh AD, Taranova M, Lionberger TA, Lillian TD, Andricioaei I, Perkins NC. Structural ensemble and dynamics of toroidal-like DNA shapes in bacteriophage ϕ29 exit cavity. Biophysical Journal. 104: 2058-67. PMID 23663849 DOI: 10.1016/J.Bpj.2013.03.032  0.805
2013 Hirsh AD, Lillian TD, Lionberger TA, Taranova M, Andricioaei I, Perkins NC. A model for highly strained DNA compressed inside a protein cavity Journal of Computational and Nonlinear Dynamics. 8. DOI: 10.1115/1.4007535  0.705
2013 Lillian TD, Bell D. Dynamics of Plectonemic Supercoils along Stretched DNA by Brownian Dynamics Biophysical Journal. 104: 261a. DOI: 10.1016/J.Bpj.2012.11.1468  0.715
2012 Haeusler AR, Goodson KA, Lillian TD, Wang X, Goyal S, Perkins NC, Kahn JD. FRET studies of a landscape of Lac repressor-mediated DNA loops. Nucleic Acids Research. 40: 4432-45. PMID 22307389 DOI: 10.1093/Nar/Gks019  0.787
2012 Hirsh AD, Taranova M, Lillian TD, Lionberger TA, Andricioaei I, Perkins NC. The Structure and Function of Highly Bent Toroidal DNA in Bacteriophage φ29 Biophysical Journal. 102: 421a-422a. DOI: 10.1016/J.Bpj.2011.11.2305  0.772
2012 Bell D, Selokar P, Lillian TD. Simulation of Plectonemic Supercoil Diffusion Along Extended DNA by Brownian Dynamics Biophysical Journal. 102: 276a. DOI: 10.1016/J.Bpj.2011.11.1520  0.662
2011 Lionberger TA, Demurtas D, Witz G, Dorier J, Lillian T, Meyhöfer E, Stasiak A. Cooperative kinking at distant sites in mechanically stressed DNA. Nucleic Acids Research. 39: 9820-32. PMID 21917856 DOI: 10.1093/Nar/Gkr666  0.754
2011 Hirsh AD, Lillian TD, Lionberger TA, Perkins NC. DNA modeling reveals an extended lac repressor conformation in classic in vitro binding assays. Biophysical Journal. 101: 718-26. PMID 21806940 DOI: 10.1016/J.Bpj.2011.06.040  0.82
2011 Lillian TD, Taranova M, Wereszczynski J, Andricioaei I, Perkins NC. A multiscale dynamic model of DNA supercoil relaxation by topoisomerase IB. Biophysical Journal. 100: 2016-23. PMID 21504738 DOI: 10.1016/J.Bpj.2011.03.003  0.793
2011 Hirsh AD, Lillian TD, Perkins NC. A model for highly strained DNA in a cavity Proceedings of the Asme Design Engineering Technical Conference. 4: 795-803. DOI: 10.1115/DETC2011-48711  0.802
2011 Lillian TD. An elastic rod representation for the LacI-DNA loop complex Proceedings of the Asme Design Engineering Technical Conference. 4: 713-719. DOI: 10.1115/DETC2011-47407  0.66
2011 Lillian TD, Perkins NC. Electrostatics and self-contact in an elastic rod approximation for DNA Journal of Computational and Nonlinear Dynamics. 6. DOI: 10.1115/1.4002267  0.796
2011 Lillian TD, Lionberger T, Demurtas D, Dorier J, Stasiak A, Meyhofer E, Perkins N. Mechanical Analysis Methodology for DNA Minicircles Observed by Cryo-Em Biophysical Journal. 100: 76a. DOI: 10.1016/J.Bpj.2010.12.620  0.766
2011 Hirsh AD, Taranova M, Lillian TD, Lionberger TA, Andricioaei I, Perkins NC. Investigating a Novel Toroid-Shaped DNA Structure Found in Mature Bacteriophage φ29 Biophysical Journal. 100: 401a. DOI: 10.1016/J.Bpj.2010.12.2384  0.778
2011 Lionberger TA, Demurtas D, Lillian T, Dorier J, Perkins N, Stasiak A, Meyhofer E. Structural Characterization of Torsional Destabilization in DNA Biophysical Journal. 100: 176a. DOI: 10.1016/J.Bpj.2010.12.1184  0.792
2010 Lillian TD, Perkins NC. Electrostatics and self contact in an elastic rod approximation for DNA Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference 2009, Detc2009. 4: 1447-1455. DOI: 10.1115/1.4002267  0.806
2010 Hirsh AD, Lillian TD, Perkins NC. Investigating Classic Lac Repressor-Dna Looping Experiments Using a Computational Rod Model Biophysical Journal. 98: 74a. DOI: 10.1016/J.Bpj.2009.12.420  0.809
2010 Lillian TD, Taranova M, Andricioaei I, Perkins NC. Simulating the Relaxation of DNA Supercoils By Topoisomerase I Biophysical Journal. 98: 74a. DOI: 10.1016/J.Bpj.2009.12.417  0.814
2010 Wilson DP, Lillian T, Tkachenko A, Perkins NC, Meiners J. A Generalized Theory of DNA Cyclization and Loop Formation Biophysical Journal. 98: 469a. DOI: 10.1016/J.Bpj.2009.12.2553  0.785
2010 Lionberger T, Demurtas D, Lillian T, Dorier J, Perkins N, Stasiak A, Meyhofer E. A Direct Observation of Highly Bent and Twisted DNA at the Single Molecule Level Biophysical Journal. 98: 467a. DOI: 10.1016/J.Bpj.2009.12.2539  0.753
2009 Lillian TD, Perkins NC. Re-Interpretation of Müller-Hill Experiments on the LacR-DNA Complex Using a Computational Model Biophysical Journal. 96: 576a. DOI: 10.1016/J.Bpj.2008.12.3013  0.778
2009 Wilson DP, Meiners J, Lillian T, Tkachenko A, Perkins NC. The Role of Sequence-Dependent Mechanics in DNA Looping Biophysical Journal. 96: 20a. DOI: 10.1016/J.Bpj.2008.12.1005  0.791
2008 Lillian TD, Goyal S, Kahn JD, Meyhöfer E, Perkins NC. Computational analysis of looping of a large family of highly bent DNA by LacI. Biophysical Journal. 95: 5832-42. PMID 18931251 DOI: 10.1529/Biophysj.108.142471  0.787
2008 Lillian TD, Perkins NC, Goyal S. Computational elastic rod model applied to DNA looping 2007 Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, Detc2007. 5: 1449-1456. DOI: 10.1115/DETC2007-34956  0.797
2007 Goyal S, Lillian T, Blumberg S, Meiners JC, Meyhöfer E, Perkins NC. Intrinsic curvature of DNA influences LacR-mediated looping. Biophysical Journal. 93: 4342-59. PMID 17766355 DOI: 10.1529/Biophysj.107.112268  0.821
2007 Wilson DP, Lillian T, Goyal S, Tkachenko AV, Perkins NC, Mieiners JC. Understanding the role of thermal fluctuations in DNA looping Proceedings of Spie - the International Society For Optical Engineering. 6602. DOI: 10.1117/12.724717  0.803
Low-probability matches (unlikely to be authored by this person)
2005 Cannon BR, Lillian TD, Magleby SP, Howell LL, Linford MR. A compliant end-effector for microscribing Precision Engineering. 29: 86-94. DOI: 10.1016/J.Precisioneng.2004.05.006  0.292
2000 Lillian T, Rameshkumar K. Estrogen receptor expression in adenomyosis - Does it shed a light on pathogenesis? International Journal of Gynecology & Obstetrics. 70: A47-A47. DOI: 10.1016/S0020-7292(00)82126-8  0.016
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