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Gail L. Rosen, Ph.D. - Publications

Affiliations: 
2006 Georgia Institute of Technology, Atlanta, GA 
Area:
Electronics and Electrical Engineering, Bioinformatics Biology
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhao Z, Cristian A, Rosen G. Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life. Bmc Bioinformatics. 21: 412. PMID 32957925 DOI: 10.1186/S12859-020-03744-7  0.38
2020 Zhao Z, Sokhansanj BA, Malhotra C, Zheng K, Rosen GL. Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization. Plos Computational Biology. 16: e1008269. PMID 32941419 DOI: 10.1371/Journal.Pcbi.1008269  0.352
2020 Cullen CM, Aneja KK, Beyhan S, Cho CE, Woloszynek S, Convertino M, McCoy SJ, Zhang Y, Anderson MZ, Alvarez-Ponce D, Smirnova E, Karstens L, Dorrestein PC, Li H, Sen Gupta A, ... ... Rosen GL, et al. Emerging Priorities for Microbiome Research. Frontiers in Microbiology. 11: 136. PMID 32140140 DOI: 10.3389/Fmicb.2020.00136  0.329
2019 Woloszynek S, Mell JC, Zhao Z, Simpson G, O'Connor MP, Rosen GL. Exploring thematic structure and predicted functionality of 16S rRNA amplicon data. Plos One. 14: e0219235. PMID 31825995 DOI: 10.1371/Journal.Pone.0219235  0.392
2019 Woloszynek S, Zhao Z, Chen J, Rosen GL. 16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses. Plos Computational Biology. 15: e1006721. PMID 30807567 DOI: 10.1371/Journal.Pcbi.1006721  0.384
2018 Ditzler G, LaBarck J, Ritchie J, Rosen G, Polikar R. Extensions to Online Feature Selection Using Bagging and Boosting. Ieee Transactions On Neural Networks and Learning Systems. 29: 4504-4509. PMID 29028210 DOI: 10.1109/Tnnls.2017.2746107  0.34
2017 McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, ... ... Rosen GL, et al. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. 18: 182. PMID 28934964 DOI: 10.1186/S13059-017-1299-7  0.411
2017 Ditzler G, Polikar R, Rosen G, Ditzler G, Polikar R, Rosen G, Ditzler G, Rosen G, Polikar R. A Sequential Learning Approach for Scaling Up Filter-Based Feature Subset Selection. Ieee Transactions On Neural Networks and Learning Systems. 29: 2530-2544. PMID 28504951 DOI: 10.1109/Tnnls.2017.2697407  0.347
2016 Lan Y, Rosen G, Hershberg R. Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains. Microbiome. 4: 18. PMID 27138046 DOI: 10.1186/S40168-016-0162-5  0.33
2016 Woloszynek S, Pastor S, Mell JC, Nandi N, Sokhansanj B, Rosen GL. Engineering Human Microbiota: Influencing Cellular and Community Dynamics for Therapeutic Applications. International Review of Cell and Molecular Biology. 324: 67-124. PMID 27017007 DOI: 10.1016/Bs.Ircmb.2016.01.003  0.33
2015 Ditzler G, Morrison JC, Lan Y, Rosen GL. Fizzy: feature subset selection for metagenomics. Bmc Bioinformatics. 16: 358. PMID 26538306 DOI: 10.1186/S12859-015-0793-8  0.363
2015 Ditzler G, Polikar R, Rosen G. Multi-Layer and Recursive Neural Networks for Metagenomic Classification. Ieee Transactions On Nanobioscience. 14: 608-16. PMID 26316190 DOI: 10.1109/Tnb.2015.2461219  0.312
2015 Reichenberger ER, Rosen G, Hershberg U, Hershberg R. Prokaryotic nucleotide composition is shaped by both phylogeny and the environment. Genome Biology and Evolution. 7: 1380-9. PMID 25861819 DOI: 10.1093/Gbe/Evv063  0.586
2015 Ditzler G, Polikar R, Rosen G. A bootstrap based Neyman-Pearson test for identifying variable importance. Ieee Transactions On Neural Networks and Learning Systems. 26: 880-6. PMID 25794384 DOI: 10.1109/Tnnls.2014.2320415  0.323
2015 Essinger SD, Reichenberger E, Morrison C, Blackwood CB, Rosen GL. A toolkit for ARB to integrate custom databases and externally built phylogenies. Plos One. 10: e0109277. PMID 25607539 DOI: 10.1371/Journal.Pone.0109277  0.325
2014 Koslicki D, Foucart S, Rosen G. WGSQuikr: fast whole-genome shotgun metagenomic classification. Plos One. 9: e91784. PMID 24626336 DOI: 10.1371/Journal.Pone.0091784  0.382
2014 Lan Y, Morrison JC, Hershberg R, Rosen GL. POGO-DB--a database of pairwise-comparisons of genomes and conserved orthologous genes. Nucleic Acids Research. 42: D625-32. PMID 24198250 DOI: 10.1093/Nar/Gkt1094  0.366
2014 Ditzler G, Rosen G. Feature subset selection for inferring relative importance of taxonomy Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 673-679. DOI: 10.1145/2649387.2660824  0.329
2013 Koslicki D, Foucart S, Rosen G. Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing. Bioinformatics (Oxford, England). 29: 2096-102. PMID 23786768 DOI: 10.1093/Bioinformatics/Btt336  0.355
2013 Reichenberger ER, Alexander GM, Perreault MJ, Russell JA, Schwartzman RJ, Hershberg U, Rosen G. Establishing a relationship between bacteria in the human gut and complex regional pain syndrome. Brain, Behavior, and Immunity. 29: 62-9. PMID 23261776 DOI: 10.1016/J.Bbi.2012.12.005  0.565
2013 Bouchot JL, Trimble WL, Ditzler G, Lan Y, Essinger S, Rosen G. Advances in Machine Learning for Processing and Comparison of Metagenomic Data Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. 295-329. DOI: 10.1016/B978-0-12-405926-9.00014-9  0.306
2012 Sullam KE, Essinger SD, Lozupone CA, O'Connor MP, Rosen GL, Knight R, Kilham SS, Russell JA. Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis. Molecular Ecology. 21: 3363-78. PMID 22486918 DOI: 10.1111/J.1365-294X.2012.05552.X  0.334
2012 Lan Y, Wang Q, Cole JR, Rosen GL. Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms. Plos One. 7: e32491. PMID 22403664 DOI: 10.1371/Journal.Pone.0032491  0.391
2012 Rosen GL, Lim TY. NBC update: The addition of viral and fungal databases to the Naïve Bayes classification tool. Bmc Research Notes. 5: 81. PMID 22293603 DOI: 10.1186/1756-0500-5-81  0.356
2012 Chen X, Hu X, Lim TY, Shen X, Park EK, Rosen GL. Exploiting the functional and taxonomic structure of genomic data by probabilistic topic modeling. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 980-91. PMID 21844637 DOI: 10.1109/Tcbb.2011.113  0.387
2011 Garbarine E, DePasquale J, Gadia V, Polikar R, Rosen G. Information-theoretic approaches to SVM feature selection for metagenome read classification. Computational Biology and Chemistry. 35: 199-209. PMID 21704267 DOI: 10.1016/J.Compbiolchem.2011.04.007  0.373
2011 Rosen GL, Polikar R, Caseiro DA, Essinger SD, Sokhansanj BA. Discovering the unknown: improving detection of novel species and genera from short reads. Journal of Biomedicine & Biotechnology. 2011: 495849. PMID 21541181 DOI: 10.1155/2011/495849  0.357
2011 Rosen GL, Reichenberger ER, Rosenfeld AM. NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads. Bioinformatics (Oxford, England). 27: 127-9. PMID 21062764 DOI: 10.1093/Bioinformatics/Btq619  0.371
2010 Rosen GL, Essinger SD. Comparison of statistical methods to classify environmental genomic fragments. Ieee Transactions On Nanobioscience. 9: 310-6. PMID 20876033 DOI: 10.1109/Tnb.2010.2081375  0.39
2009 Rosen GL, Sokhansanj BA, Polikar R, Bruns MA, Russell J, Garbarine E, Essinger S, Yok N. Signal processing for metagenomics: extracting information from the soup. Current Genomics. 10: 493-510. PMID 20436876 DOI: 10.2174/138920209789208255  0.429
2008 Rosen G, Garbarine E, Caseiro D, Polikar R, Sokhansanj B. Metagenome fragment classification using N-mer frequency profiles. Advances in Bioinformatics. 2008: 205969. PMID 19956701 DOI: 10.1155/2008/205969  0.393
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