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Gordon S. Rule - Publications

Affiliations: 
1996 Biochemistry University of Virginia School of Medicine, Charlottesville, VA, United States 
 1996- Carnegie Mellon University, Pittsburgh, PA 
Area:
General Biophysics, Biochemistry
Website:
https://www.cmu.edu/bio/people/faculty/rule.html
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58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Fucci IJ, Sinha K, Rule GS. Protein Dynamics Is Altered by a High Surface Density of Atomic Transfer Radical Polymerization Polymers. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 34048258 DOI: 10.1021/acs.langmuir.1c00755  0.724
2021 Sinha K, Rule GS. Conformational Diversity Defines Substrate Specificity of Thymidylate/Uridylate Kinase from Candida albicans. Proteins. PMID 33682244 DOI: 10.1002/prot.26071  0.581
2020 Singewald K, Bogetti X, Sinha K, Rule G, Saxena SK. Double Histidine based EPR measurements at physiological temperatures permit site-specific elucidation of hidden dynamics in enzymes. Angewandte Chemie (International Ed. in English). PMID 32910837 DOI: 10.1002/Anie.202009982  0.614
2020 Fucci IJ, Sinha K, Rule GS. Stabilization of Active Site Dynamics Leads to Increased Activity with 3'-Azido-3'-deoxythymidine Monophosphate for F105Y Mutant Human Thymidylate Kinase. Acs Omega. 5: 2355-2367. PMID 32064397 DOI: 10.1021/acsomega.9b03766  0.735
2020 Chen MD, Fucci IJ, Sinha K, Rule GS. dGMP Binding to Thymidylate Kinase from Shows Half-Site Binding and Induces Protein Dynamics at the Dimer Interface. Biochemistry. PMID 31934749 DOI: 10.1021/Acs.Biochem.9B00898  0.734
2018 Chen M, Sinha K, Rule GS, Ly DH. Interaction of α-Thymidine Inhibitors with Thymidylate Kinase from Plasmodium falciparum. Biochemistry. PMID 29684273 DOI: 10.1021/Acs.Biochem.8B00162  0.563
2018 Thadke S, Perera JDR, Hridya VM, Bhatt K, Shaikh AY, Hsieh WC, Chen MD, Gayathri C, Gil RR, Rule GS, Mukherjee A, Thornton CA, Ly DH. Design of Bivalent Nucleic Acid Ligands for Recognition of RNA-Repeated Expansion Associated with Huntington's Disease. Biochemistry. PMID 29562132 DOI: 10.1021/Acs.Biochem.8B00062  0.324
2018 Lawless MJ, Pettersson JR, Rule GS, Lanni F, Saxena S. ESR Resolves the C Terminus Structure of the Ligand-free Human Glutathione S-Transferase A1-1. Biophysical Journal. 114: 592-601. PMID 29414705 DOI: 10.1016/J.Bpj.2017.12.016  0.359
2018 Sinha K, Sangani S, Rule G, Jen-Jacobson L. Backbone assignments and ILV methyl assignments for EcoRV bound to 16-mer double stranded DNA (GCAAAGATATCTTTCG) without Lu3+ Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25701  0.547
2017 Ghosh S, Lawless MJ, Rule GS, Saxena S. The Cu2+-nitrilotriacetic acid complex improves loading of α-helical double histidine site for precise distance measurements by pulsed ESR. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 286: 163-171. PMID 29272745 DOI: 10.1016/J.Jmr.2017.12.005  0.304
2017 Sinha K, Rule GS. Structure of Thymidylate Kinase from Candida albicans Reveals a Unique Structural Element. Biochemistry. PMID 28742342 DOI: 10.1021/Acs.Biochem.7B00498  0.601
2017 Pettersson JR, Lanni F, Rule GS. Dual lifetimes for complexes between Glutathione-S-transferase (hGSTA1-1) and product-like ligands detected by single-molecule fluorescence imaging. Biochemistry. PMID 28677395 DOI: 10.1021/Acs.Biochem.7B00030  0.373
2016 Sinha K, Sangani SS, Kehr AD, Rule GS, Jen-Jacobson L. Metal Ion Binding at the Catalytic Site Induces Widely Distributed Changes in a Sequence Specific Protein-DNA Complex. Biochemistry. PMID 27786446 DOI: 10.1021/Acs.Biochem.6B00919  0.759
2014 Kehr AD, Macbeth MR, Rule GS. ADAR2: Towards a Structural and Kinetic Understanding of RNA Editing Biophysical Journal. 106: 696a. DOI: 10.1016/J.Bpj.2013.11.3851  0.757
2013 Sinha K, Jen-Jacobson L, Rule GS. Divide and conquer is always best: sensitivity of methyl correlation experiments. Journal of Biomolecular Nmr. 56: 331-5. PMID 23771591 DOI: 10.1007/S10858-013-9751-9  0.547
2012 Markley JL, Akutsu H, Asakura T, Baldus M, Boelens R, Bonvin A, Kaptein R, Bax A, Bezsonova I, Gryk MR, Hoch JC, Korzhnev DM, Maciejewski MW, Case D, Chazin WJ, ... ... Rule G, et al. In support of the BMRB. Nature Structural & Molecular Biology. 19: 854-60. PMID 22955930 DOI: 10.1038/Nsmb.2371  0.55
2012 Senutovitch N, Stanfield RL, Bhattacharyya S, Rule GS, Wilson IA, Armitage BA, Waggoner AS, Berget PB. A variable light domain fluorogen activating protein homodimerizes to activate dimethylindole red. Biochemistry. 51: 2471-85. PMID 22390683 DOI: 10.1021/Bi201422G  0.535
2011 Sinha K, Jen-Jacobson L, Rule GS. Specific labeling of threonine methyl groups for NMR studies of protein-nucleic acid complexes. Biochemistry. 50: 10189-91. PMID 22039762 DOI: 10.1021/Bi201496D  0.595
2006 Hitchens TK, Zhan Y, Richardson LV, Richardson JP, Rule GS. Sequence-specific interactions in the RNA-binding domain of Escherichia coli transcription termination factor Rho. The Journal of Biological Chemistry. 281: 33697-703. PMID 16908525 DOI: 10.1074/Jbc.M605312200  0.609
2005 Zhan Y, Rule GS. Stable triplet of uracil-uracil basepairs in a small antisense RNA. Journal of the American Chemical Society. 127: 15714-5. PMID 16277508 DOI: 10.1021/Ja055675M  0.543
2004 Zhan Y, Rule GS. Glutathione induces helical formation in the carboxy terminus of human glutathione transferase A1-1. Biochemistry. 43: 7244-54. PMID 15182170 DOI: 10.1021/Bi0363329  0.605
2003 Hitchens TK, McCallum SA, Rule GS. Data requirements for reliable chemical shift assignments in deuterated proteins. Journal of Biomolecular Nmr. 25: 11-23. PMID 12566996 DOI: 10.1023/A:1021912002051  0.318
2003 Hitchens TK, Lukin JA, Zhan Y, McCallum SA, Rule GS. MONTE: An automated Monte Carlo based approach to nuclear magnetic resonance assignment of proteins. Journal of Biomolecular Nmr. 25: 1-9. PMID 12566995 DOI: 10.1023/A:1021975923026  0.558
2002 Derewenda U, Li J, Derewenda Z, Dauter Z, Mueller GA, Rule GS, Benjamin DC. The crystal structure of a major dust mite allergen Der p 2, and its biological implications. Journal of Molecular Biology. 318: 189-97. PMID 12054778 DOI: 10.1016/S0022-2836(02)00027-X  0.35
2001 Lathrop B, Gadd M, Biltonen RL, Rule GS. Changes in Ca2+ affinity upon activation of Agkistrodon piscivorus piscivorus phospholipase A2. Biochemistry. 40: 3264-72. PMID 11258945 DOI: 10.1021/Bi001901N  0.369
2001 Mueller GA, Smith AM, Chapman MD, Rule GS, Benjamin DC. Hydrogen exchange nuclear magnetic resonance spectroscopy mapping of antibody epitopes on the house dust mite allergen Der p 2. The Journal of Biological Chemistry. 276: 9359-65. PMID 11134039 DOI: 10.1074/Jbc.M010812200  0.323
2000 McCallum SA, Hitchens TK, Torborg C, Rule GS. Ligand-induced changes in the structure and dynamics of a human class mu glutathione S-transferase Biochemistry. 39: 7343-7356. PMID 10858281 DOI: 10.1021/Bi992767D  0.442
1999 Hitchens TK, McCallum SA, Rule GS. A JCH-Modulated 2D (HACACO)NH Pulse Scheme for Quantitative Measurement of 13Cα-1Hα Couplings in 15N, 13C-Labeled Proteins Journal of Magnetic Resonance. 140: 281-284. PMID 10479573 DOI: 10.1006/Jmre.1999.1847  0.334
1999 McCallum SA, Hitchens TK, Rule GS. Solution structure of the carboxyl terminus of a human class mu glutathione S-transferase: NMR assignment strategies in large proteins Journal of Molecular Biology. 285: 2119-2132. PMID 9925789 DOI: 10.1006/Jmbi.1998.2428  0.429
1998 McCallum SA, Hitchens TK, Rule GS. Unambiguous Correlations of Backbone Amide and Aliphatic Gamma Resonances in Deuterated Proteins Journal of Magnetic Resonance. 134: 350-354. PMID 9761709 DOI: 10.1006/Jmre.1998.1525  0.352
1998 Briercheck DM, Rule GS. Effect of Deuteration on the Accuracy of HN-HN Distance Constraints Journal of Magnetic Resonance. 134: 52-56. PMID 9740730 DOI: 10.1006/Jmre.1998.1511  0.323
1998 Mueller GA, Benjamin DC, Rule GS. Tertiary structure of the major house dust mite allergen Der p 2: Sequential and structural homologies Biochemistry. 37: 12707-12714. PMID 9737847 DOI: 10.1021/Bi980578+  0.316
1998 Briercheck DM, Wood TC, Allison TJ, Richardson JP, Rule GS. The NMR structure of the RNA binding domain of E. coli rho factor suggests possible RNA-protein interactions. Nature Structural Biology. 5: 393-9. PMID 9587002 DOI: 10.1038/Nsb0598-393  0.394
1998 Allison TJ, Wood TC, Briercheck DM, Rastinejad F, Richardson JP, Rule GS. Crystal structure of the RNA-binding domain from transcription termination factor rho. Nature Structural Biology. 5: 352-6. PMID 9586995 DOI: 10.1038/Nsb0598-352  0.326
1997 Mueller GA, Smith AM, Williams DC, Hakkaart GAJ, Aalberse RC, Chapman MD, Rule GS, Benjamin DC. Expression and secondary structure determination by NMR methods of the major house dust mite allergen Der p 2 Journal of Biological Chemistry. 272: 26893-26898. PMID 9341122 DOI: 10.1074/Jbc.272.43.26893  0.347
1997 Williams DC, Rule GS, Poljak RJ, Benjamin DC. Reduction in the amide hydrogen exchange rates of an anti-lysozyme Fv fragment due to formation of the Fv-lysozyme complex Journal of Molecular Biology. 270: 751-762. PMID 9245602 DOI: 10.1006/Jmbi.1997.1122  0.386
1997 Jerala R, Almeida PFF, Biltonen RL, Rule GS. NMR confirms the presence of the aminoterminal helix of group II phospholipase A2 in solution Techniques in Protein Chemistry. 8: 625-632. DOI: 10.1016/S1080-8914(97)80062-2  0.377
1996 Briercheck DM, Allison TJ, Richardson JP, Ellena JF, Wood TC, Rule GS. 1H, 15N and 13C resonance assignments and secondary structure determination of the RNA-binding domain of E.coli rho protein. Journal of Biomolecular Nmr. 8: 429-44. PMID 9008362 DOI: 10.1007/Bf00228145  0.427
1996 Williams DC, Benjamin DC, Poljak RJ, Rule GS. Global changes in amide hydrogen exchange rates for a protein antigen in complex with three different antibodies Journal of Molecular Biology. 257: 866-876. PMID 8636987 DOI: 10.1006/Jmbi.1996.0207  0.323
1996 Jerala R, Almeida PFF, Ye Q, Biltonen RL, Rule GS. 1H, 15N and 13C resonance assignments and secondary structure of group II phospholipase A2 from Agkistrodon piscivorus piscivorus: Presence of an amino-terminal helix in solution Journal of Biomolecular Nmr. 7: 107-120. PMID 8616268 DOI: 10.1007/Bf00203821  0.359
1994 Raghunathan S, Chandross RJ, Kretsinger RH, Allison TJ, Penington CJ, Rule GS. Crystal structure of human class mu glutathione transferase GSTM2-2. Effects of lattice packing on conformational heterogeneity. Journal of Molecular Biology. 238: 815-32. PMID 8182750 DOI: 10.1006/Jmbi.1994.1336  0.386
1994 Chi LM, Vyas AA, Rule GS, Wu WG. Expression of glutathione S-transferase-cardiotoxin fusion protein in Escherichia coli. Toxicon : Official Journal of the International Society On Toxinology. 32: 1679-83. PMID 7725337 DOI: 10.1016/0041-0101(94)90328-X  0.323
1993 Singhal AK, Chien KY, Wu WG, Rule GS. Solution structure of cardiotoxin V from Naja naja atra Biochemistry. 32: 8036-8044. PMID 8347605 DOI: 10.1021/Bi00082A026  0.357
1993 Theriault TP, McConnell HM, Singhal AK, Rule GS. Anomalous kinetics in antibody-antigen interactions Journal of Physical Chemistry. 97: 3034-3039. DOI: 10.1021/J100114A034  0.558
1993 Rule GS, Tjandra N, Simplaceanu V, Ho C. Assignment Strategies for 15N-1H Correlated Spectra of Large Proteins in Solution Journal of Magnetic Resonance, Series B. 102: 126-128. DOI: 10.1006/Jmrb.1993.1074  0.445
1992 Penington CJ, Rule GS. Application of site-directed mutagenesis in nuclear magnetic resonance spectroscopy Biophysical Journal. 62: 116-118. PMID 1600091 DOI: 10.1016/S0006-3495(92)81797-6  0.308
1992 Penington CJ, Rule GS. Mapping the substrate-binding site of a human class Mu glutathione transferase using nuclear magnetic resonance spectroscopy Biochemistry®. 31: 2912-2920. PMID 1550817 DOI: 10.1021/Bi00126A010  0.42
1992 Benjamin DC, Williams DC, Smith-Gill SJ, Rule GS. Long-range changes in a protein antigen due to antigen-antibody interaction Biochemistry. 31: 9539-9545. PMID 1382591 DOI: 10.1021/Bi00155A005  0.35
1991 Truong HTN, Pratt EA, Rule GS, Hsue PY, Ho C. Inactive and temperature-sensitive folding mutants generated by tryptophan substitutions in the membrane-bound D-lactate dehydrogenase of Escherichia coli Biochemistry. 30: 10722-10729. PMID 1931992 DOI: 10.1021/Bi00108A017  0.525
1991 Theriault TP, Leahy DJ, Levitt M, McConnell HM, Rule GS. Structural and kinetic studies of the Fab fragment of a monoclonal anti-spin label antibody by nuclear magnetic resonance. Journal of Molecular Biology. 221: 257-70. PMID 1920409 DOI: 10.1016/0022-2836(91)80218-J  0.689
1990 Peersen OB, Pratt EA, Truong HT, Ho C, Rule GS. Site-specific incorporation of 5-fluorotryptophan as a probe of the structure and function of the membrane-bound D-lactate dehydrogenase of Escherichia coli: a 19F nuclear magnetic resonance study. Biochemistry. 29: 3256-62. PMID 2185834 DOI: 10.1021/Bi00465A017  0.566
1989 Ho C, Pratt EA, Rule GS. Membrane-bound d-lactate dehydrogenase of Escherichia coli: a model for protein interactions in membranes Bba - Reviews On Biomembranes. 988: 173-184. PMID 2655708 DOI: 10.1016/0304-4157(89)90018-X  0.436
1988 Leahy DJ, Rule GS, Whittaker MM, McConnell HM. Sequences of 12 monoclonal anti-dinitrophenyl spin-label antibodies for NMR studies. Proceedings of the National Academy of Sciences of the United States of America. 85: 3661-5. PMID 3375235 DOI: 10.1073/Pnas.85.11.3661  0.611
1987 Rule GS, Pratt EA, Simplaceanu V, Ho C. Nuclear magnetic resonance and molecular genetic studies of the membrane-bound D-lactate dehydrogenase of Escherichia coli Biochemistry. 26: 549-556. PMID 3548821 DOI: 10.1021/Bi00376A029  0.546
1987 Anglister J, Bond MW, Frey T, Leahy D, Levitt M, McConnell HM, Rule GS, Tomasello J, Whittaker M. Contribution of tryptophan residues to the combining site of a monoclonal anti dinitrophenyl spin-label antibody. Biochemistry. 26: 6058-64. PMID 3120771 DOI: 10.1021/Bi00393A017  0.658
1986 Ho C, Rule GS, Pratt EA. Nuclear magnetic resonance, biochemical, and molecular genetic studies of the membrane-bound d-lactate dehydrogenase of Escherichia coli. Biophysical Journal. 49: 113-5. PMID 19431609 DOI: 10.1016/S0006-3495(86)83615-3  0.456
1985 Rule GS, Pratt EA, Chin CC, Wold F, Ho C. Overproduction and nucleotide sequence of the respiratory D-lactate dehydrogenase of Escherichia coli. Journal of Bacteriology. 161: 1059-68. PMID 3882663 DOI: 10.1128/Jb.161.3.1059-1068.1985  0.458
1981 Fraley R, Straubinger RM, Rule G, Springer EL, Papahadjopoulos D. Liposome-mediated delivery of deoxyribonucleic acid to cells: enhanced efficiency of delivery related to lipid composition and incubation conditions. Biochemistry. 20: 6978-87. PMID 6274382 DOI: 10.1021/bi00527a031  0.524
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