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Sanguk Kim, Ph.D. - Publications

Affiliations: 
1998-2002 Molecular Biophysics Florida State University, Tallahassee, FL, United States 
 2002-2005 Biochemistry University of California, Los Angeles, Los Angeles, CA 
 2005- Life Science Pohang University of Science and Technology (POSTECH), Pohang, Gyeongsangbuk-do, South Korea 
Area:
Computational Biology, Solid State Protein NMR
Website:
http://sbi.postech.ac.kr
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lee H, Kim I, Han SK, Kim D, Kong J, Kim S. Domain-mediated interactions for protein subfamily identification. Scientific Reports. 10: 264. PMID 31937869 DOI: 10.1038/S41598-019-57187-Z  0.396
2019 Kim I, Lee H, Lee K, Han SK, Kim D, Kim S. Link clustering explains non-central and contextually essential genes in protein interaction networks. Scientific Reports. 9: 11672. PMID 31406201 DOI: 10.1038/S41598-019-48273-3  0.311
2019 Kim D, Han SK, Lee K, Kim I, Kong J, Kim S. Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites. Nucleic Acids Research. PMID 31199866 DOI: 10.1093/Nar/Gkz536  0.3
2019 An SWA, Choi ES, Hwang W, Son HG, Yang JS, Seo K, Nam HJ, Nguyen NTH, Kim EJE, Suh BK, Kim Y, Nakano S, Ryu Y, Man Ha C, Mori I, ... ... Kim S, et al. KIN-4/MAST kinase promotes PTEN-mediated longevity of Caenorhabditis elegans via binding through a PDZ domain. Aging Cell. e12906. PMID 30773781 DOI: 10.1111/Acel.12906  0.371
2018 Lee H, Cheong SM, Han W, Koo Y, Jo SB, Cho GS, Yang JS, Kim S, Han JK. March2 is required for head formation by mediating Dishevelled degradation in concert with Dapper1. Development (Cambridge, England). PMID 29549110 DOI: 10.1242/Dev.143107  0.35
2015 Nam HJ, Kim I, Bowie JU, Kim S. Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network. Scientific Reports. 5: 9576. PMID 25923201 DOI: 10.1038/Srep09576  0.624
2014 Kim I, Lee H, Han SK, Kim S. Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks. Plos Computational Biology. 10: e1003881. PMID 25299147 DOI: 10.1371/Journal.Pcbi.1003881  0.332
2014 Choi YS, Yoon S, Kim KL, Yoo J, Song P, Kim M, Shin YE, Yang WJ, Noh JE, Cho HS, Kim S, Chung J, Ryu SH. Computational design of binding proteins to EGFR domain II. Plos One. 9: e92513. PMID 24710267 DOI: 10.1371/Journal.Pone.0092513  0.348
2013 Skorupka K, Han SK, Nam HJ, Kim S, Faham S. Protein design by fusion: implications for protein structure prediction and evolution. Acta Crystallographica. Section D, Biological Crystallography. 69: 2451-60. PMID 24311586 DOI: 10.1107/S0907444913022701  0.396
2013 Nam HJ, Han SK, Bowie JU, Kim S. Rampant exchange of the structure and function of extramembrane domains between membrane and water soluble proteins. Plos Computational Biology. 9: e1002997. PMID 23555228 DOI: 10.1371/Journal.Pcbi.1002997  0.65
2012 Kim J, Kim I, Han SK, Bowie JU, Kim S. Network rewiring is an important mechanism of gene essentiality change Scientific Reports. 2. PMID 23198090 DOI: 10.1038/Srep00900  0.525
2012 Meruelo AD, Han SK, Kim S, Bowie JU. Structural differences between thermophilic and mesophilic membrane proteins Protein Science. 21: 1746-1753. PMID 23001966 DOI: 10.1002/Pro.2157  0.777
2012 Kim J, Kim I, Yang JS, Shin YE, Hwang J, Park S, Choi YS, Kim S. Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution. Plos Genetics. 8: e1002510. PMID 22346764 DOI: 10.1371/Journal.Pgen.1002510  0.349
2012 Choi DS, Yang JS, Choi EJ, Jang SC, Park S, Kim OY, Hwang D, Kim KP, Kim YK, Kim S, Gho YS. The protein interaction network of extracellular vesicles derived from human colorectal cancer cells. Journal of Proteome Research. 11: 1144-51. PMID 22149170 DOI: 10.1021/Pr200842H  0.367
2011 Jeon J, Jeong JH, Baek JH, Koo HJ, Park WH, Yang JS, Yu MH, Kim S, Pak YK. Network clustering revealed the systemic alterations of mitochondrial protein expression. Plos Computational Biology. 7: e1002093. PMID 21738461 DOI: 10.1371/Journal.Pcbi.1002093  0.316
2011 Park S, Yang JS, Shin YE, Park J, Jang SK, Kim S. Protein localization as a principal feature of the etiology and comorbidity of genetic diseases. Molecular Systems Biology. 7: 494. PMID 21613983 DOI: 10.1038/Msb.2011.29  0.303
2011 Lee J, Lee H, Kim J, Lee S, Kim DH, Kim S, Hwang I. Both the hydrophobicity and a positively charged region flanking the C-terminal region of the transmembrane domain of signal-anchored proteins play critical roles in determining their targeting specificity to the endoplasmic reticulum or endosymbiotic organelles in Arabidopsis cells. The Plant Cell. 23: 1588-607. PMID 21515817 DOI: 10.1105/Tpc.110.082230  0.379
2011 Jeon J, Nam HJ, Choi YS, Yang JS, Hwang J, Kim S. Molecular evolution of protein conformational changes revealed by a network of evolutionarily coupled residues. Molecular Biology and Evolution. 28: 2675-85. PMID 21470969 DOI: 10.1093/Molbev/Msr094  0.424
2011 Kim JK, Lim S, Kim J, Kim S, Kim JH, Ryu SH, Suh PG. Subtype-specific roles of phospholipase C-β via differential interactions with PDZ domain proteins. Advances in Enzyme Regulation. 51: 138-51. PMID 21035486 DOI: 10.1016/J.Advenzreg.2010.10.004  0.32
2010 Choi YS, Han SK, Kim J, Yang JS, Jeon J, Ryu SH, Kim S. ConPlex: a server for the evolutionary conservation analysis of protein complex structures. Nucleic Acids Research. 38: W450-6. PMID 20435678 DOI: 10.1093/Nar/Gkq328  0.396
2010 Jeon J, Choi YS, Yang J, Nam H, Kim S. Evolutionary Analysis of Conformational Changes in Allosteric Proteins Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.159  0.408
2009 Nam HJ, Jeon J, Kim S. Bioinformatic approaches for the structure and function of membrane proteins. Bmb Reports. 42: 697-704. PMID 19944009 DOI: 10.5483/Bmbrep.2009.42.11.697  0.423
2009 Jeon J, Yang JS, Kim S. Integration of evolutionary features for the identification of functionally important residues in major facilitator superfamily transporters. Plos Computational Biology. 5: e1000522. PMID 19798434 DOI: 10.1371/Journal.Pcbi.1000522  0.4
2009 Park S, Yang JS, Jang SK, Kim S. Construction of functional interaction networks through consensus localization predictions of the human proteome. Journal of Proteome Research. 8: 3367-76. PMID 19415893 DOI: 10.1021/Pr900018Z  0.326
2009 Choi YS, Yang JS, Choi Y, Ryu SH, Kim S. Evolutionary conservation in multiple faces of protein interaction. Proteins. 77: 14-25. PMID 19350617 DOI: 10.1002/Prot.22410  0.38
2008 Min CK, Bang SY, Cho BA, Choi YH, Yang JS, Lee SH, Seong SY, Kim KW, Kim S, Jung JU, Choi MS, Kim IS, Cho NH. Role of amphipathic helix of a herpesviral protein in membrane deformation and T cell receptor downregulation. Plos Pathogens. 4: e1000209. PMID 19023411 DOI: 10.1371/Journal.Ppat.1000209  0.388
2008 Lee DW, Kim JK, Lee S, Choi S, Kim S, Hwang I. Arabidopsis nuclear-encoded plastid transit peptides contain multiple sequence subgroups with distinctive chloroplast-targeting sequence motifs. The Plant Cell. 20: 1603-22. PMID 18552198 DOI: 10.1105/Tpc.108.060541  0.322
2008 Page RC, Kim S, Cross TA. Transmembrane Helix Uniformity Examined by Spectral Mapping of Torsion Angles Structure. 16: 787-797. PMID 18462683 DOI: 10.1016/J.Str.2008.02.018  0.609
2008 Lim do H, Kim J, Kim S, Carthew RW, Lee YS. Functional analysis of dicer-2 missense mutations in the siRNA pathway of Drosophila. Biochemical and Biophysical Research Communications. 371: 525-30. PMID 18454937 DOI: 10.1016/J.Bbrc.2008.04.118  0.306
2008 Gorman PM, Kim S, Guo M, Melnyk RA, McLaurin J, Fraser PE, Bowie JU, Chakrabartty A. Dimerization of the transmembrane domain of amyloid precursor proteins and familial Alzheimer's disease mutants. Bmc Neuroscience. 9: 17. PMID 18234110 DOI: 10.1186/1471-2202-9-17  0.561
2008 Choi S, Jeon J, Yang JS, Kim S. Common occurrence of internal repeat symmetry in membrane proteins. Proteins. 71: 68-80. PMID 17932930 DOI: 10.1002/Prot.21656  0.448
2007 Plotkowski ML, Kim S, Phillips ML, Partridge AW, Deber CM, Bowie JU. Transmembrane domain of myelin protein zero can form dimers: Possible implications for myelin construction Biochemistry. 46: 12164-12173. PMID 17915947 DOI: 10.1021/Bi701066H  0.684
2007 Barwe SP, Kim S, Rajasekaran SA, Bowie JU, Rajasekaran AK. Janus Model of The Na,K-ATPase β-Subunit Transmembrane Domain: Distinct Faces Mediate α/β Assembly and β-β Homo-oligomerization Journal of Molecular Biology. 365: 706-714. PMID 17078968 DOI: 10.1016/J.Jmb.2006.10.029  0.53
2007 Jeong MY, Kim S, Yun CW, Choi YJ, Cho SG. Engineering a de novo internal disulfide bridge to improve the thermal stability of xylanase from Bacillus stearothermophilus No. 236. Journal of Biotechnology. 127: 300-9. PMID 16919348 DOI: 10.1016/J.Jbiotec.2006.07.005  0.306
2006 Oberai A, Ihm Y, Kim S, Bowie JU. A limited universe of membrane protein families and folds Protein Science. 15: 1723-1734. PMID 16815920 DOI: 10.1110/Ps.062109706  0.722
2006 Go MY, Kim S, Partridge AW, Melnyk RA, Rath A, Deber CM, Mogridge J. Self-association of the transmembrane domain of an anthrax toxin receptor. Journal of Molecular Biology. 360: 145-56. PMID 16756998 DOI: 10.1016/J.Jmb.2006.04.072  0.382
2006 Choi Y, Yang J, Ryu SH, Kim S. Retrieving Protein Domain Encoding DNA Sequences Automatically Through Database Cross-referencing Interdisciplinary Bio Central. 1: 94-97. DOI: 10.4051/Ibce.2009.2.0013  0.379
2005 Kim S, Jeon TJ, Oberai A, Yang D, Schmidt JJ, Bowie JU. Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins Proceedings of the National Academy of Sciences of the United States of America. 102: 14278-14283. PMID 16179394 DOI: 10.1073/Pnas.0501234102  0.748
2005 Edwards MD, Li Y, Kim S, Miller S, Bartlett W, Black S, Dennison S, Iscla I, Blount P, Bowie JU, Booth IR. Pivotal role of the glycine-rich TM3 helix in gating the MscS mechanosensitive channel Nature Structural and Molecular Biology. 12: 113-119. PMID 15665866 DOI: 10.1038/Nsmb895  0.601
2005 Partridge AW, Liu S, Kim S, Bowie JU, Ginsberg MH. Transmembrane domain helix packing stabilizes integrin αIIbβ3 in the low affinity state Journal of Biological Chemistry. 280: 7294-7300. PMID 15591321 DOI: 10.1074/Jbc.M412701200  0.601
2004 Kim S, Chamberlain AK, Bowie JU. A model of the closed form of the nicotinic acetylcholine receptor M2 channel pore Biophysical Journal. 87: 792-799. PMID 15298888 DOI: 10.1529/Biophysj.103.039396  0.553
2004 Kim S, Cross TA. 2D solid state NMR spectral simulation of 310, α, and π-helices Journal of Magnetic Resonance. 168: 187-193. PMID 15140426 DOI: 10.1016/J.Jmr.2004.02.009  0.574
2004 Chamberlain AK, Lee Y, Kim S, Bowie JU. Snorkeling preferences foster an amino acid composition bias in transmembrane helices Journal of Molecular Biology. 339: 471-479. PMID 15136048 DOI: 10.1016/J.Jmb.2004.03.072  0.557
2004 Kim S, Chamberlain AK, Bowie JU. Membrane channel structure of Helicobacter pylori vacuolating toxin: Role of multiple GXXXG motifs in cylindrical channels Proceedings of the National Academy of Sciences of the United States of America. 101: 5988-5991. PMID 15067113 DOI: 10.1073/Pnas.0308694101  0.564
2004 Melnyk RA, Kim S, Curran AR, Engelman DM, Bowie JU, Deber CM. The affinity of GXXXG motifs in transmembrane helix-helix interactions is modulated by long-range communication. The Journal of Biological Chemistry. 279: 16591-7. PMID 14766751 DOI: 10.1074/Jbc.M313936200  0.634
2003 Kim S, Chamberlain AK, Bowie JU. A simple method for modeling transmembrane helix oligomers Journal of Molecular Biology. 329: 831-840. PMID 12787681 DOI: 10.1016/S0022-2836(03)00521-7  0.614
2002 Nishimura K, Kim S, Zhang L, Cross TA. The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR. Biochemistry. 41: 13170-7. PMID 12403618 DOI: 10.1021/Bi0262799  0.568
2002 Kim S, Cross TA. Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices. Biophysical Journal. 83: 2084-95. PMID 12324426 DOI: 10.1016/S0006-3495(02)73969-6  0.592
2001 Wang J, Kim S, Kovacs F, Cross TA. Structure of the transmembrane region of the M2 protein H(+) channel. Protein Science : a Publication of the Protein Society. 10: 2241-50. PMID 11604531 DOI: 10.1110/Ps.17901  0.639
2001 Kim S, Quine JR, Cross TA. Complete cross-validation and R-factor calculation of a solid-state NMR derived structure. Journal of the American Chemical Society. 123: 7292-8. PMID 11472156 DOI: 10.1021/Ja003380X  0.518
2001 Nishimura K, Kim S, Cross TA. The Helical Bundle Structure of M2-TMP Based on 13C-15N Intermolecular Interatomic Distances Measured by Solid State NMR Seibutsu Butsuri. 41: S177. DOI: 10.2142/Biophys.41.S177_2  0.501
2000 Wang J, Denny J, Tian C, Kim S, Mo Y, Kovacs F, Song Z, Nishimura K, Gan Z, Fu R, Quine JR, Cross TA. Imaging membrane protein helical wheels. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 144: 162-7. PMID 10783287 DOI: 10.1006/Jmre.2000.2037  0.733
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