| Year |
Citation |
Score |
| 2020 |
Pandey SK, Melichercik M, Řeha D, Ettrich RH, Carey J. Conserved Dynamic Mechanism of Allosteric Response to L-arg in Divergent Bacterial Arginine Repressors. Molecules (Basel, Switzerland). 25. PMID 32397647 DOI: 10.3390/Molecules25092247 |
0.478 |
|
| 2018 |
Sinha D, Bialevich V, Shamayeva K, Guzanova A, Sisakova A, Csefalvay E, Reha D, Krejci L, Carey J, Weiserova M, Ettrich R. A residue of motif III positions the helicase domains of motor subunit HsdR in restriction-modification enzyme EcoR124I. Journal of Molecular Modeling. 24: 176. PMID 29943199 DOI: 10.1007/S00894-018-3722-8 |
0.393 |
|
| 2017 |
Bialevich V, Sinha D, Shamayeva K, Guzanova A, Řeha D, Csefalvay E, Carey J, Weiserova M, Ettrich RH. The helical domain of the EcoR124I motor subunit participates in ATPase activity and dsDNA translocation. Peerj. 5: e2887. PMID 28133570 DOI: 10.7717/Peerj.2887 |
0.387 |
|
| 2017 |
Harish B, Swapna GV, Kornhaber GJ, Montelione GT, Carey J. Multiple helical conformations of the helix-turn-helix region revealed by NOE-restrained MD simulations of tryptophan aporepressor, TrpR. Proteins. PMID 28120439 DOI: 10.1002/Prot.25252 |
0.611 |
|
| 2016 |
Sprenger J, Carey J, Svensson B, Wengel V, Persson L. Binding and inhibition of spermidine synthase from Plasmodium falciparum and implications for in vitro inhibitor testing Plos One. 11. PMID 27661085 DOI: 10.1371/Journal.Pone.0163442 |
0.353 |
|
| 2015 |
Csefalvay E, Lapkouski M, Guzanova A, Csefalvay L, Baikova T, Shevelev I, Bialevich V, Shamayeva K, Janscak P, Kuta Smatanova I, Panjikar S, Carey J, Weiserova M, Ettrich R. Functional coupling of duplex translocation to DNA cleavage in a type I restriction enzyme. Plos One. 10: e0128700. PMID 26039067 DOI: 10.1371/Journal.Pone.0128700 |
0.37 |
|
| 2015 |
Sprenger J, Svensson B, Hålander J, Carey J, Persson L, Al-Karadaghi S. Three-dimensional structures of Plasmodium falciparum spermidine synthase with bound inhibitors suggest new strategies for drug design. Acta Crystallographica. Section D, Biological Crystallography. 71: 484-93. PMID 25760598 DOI: 10.1107/S1399004714027011 |
0.38 |
|
| 2014 |
Reha D, Harish B, Sinha D, Kukacka Z, McSally J, Ettrichova O, Novak P, Carey J, Ettrich R. Molecular dynamics comparison of E. coli WrbA apoprotein and holoprotein. Journal of Molecular Modeling. 20: 2400. PMID 25152065 DOI: 10.1007/S00894-014-2400-8 |
0.63 |
|
| 2014 |
Sinha D, Shamayeva K, Ramasubramani V, ?eha D, Bialevich V, Khabiri M, Guzanová A, Milbar N, Weiserová M, Csefalvay E, Carey J, Ettrich R. Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I. Journal of Molecular Modeling. 20: 2334. PMID 24972799 DOI: 10.1007/S00894-014-2334-1 |
0.358 |
|
| 2014 |
Pandey SK, ?eha D, Zayats V, Melichercik M, Carey J, Ettrich R. Binding-competent states for L-arginine in E. coli arginine repressor apoprotein. Journal of Molecular Modeling. 20: 2330. PMID 24952066 DOI: 10.1007/S00894-014-2330-5 |
0.469 |
|
| 2013 |
Kishko I, Carey J, Reha D, Brynda J, Winkler R, Harish B, Guerra R, Ettrichova O, Kukacka Z, Sheryemyetyeva O, Novak P, Kuty M, Kuta Smatanova I, Ettrich R, Lapkouski M. 1.2 Å resolution crystal structure of Escherichia coli WrbA holoprotein. Acta Crystallographica. Section D, Biological Crystallography. 69: 1748-57. PMID 23999298 DOI: 10.1107/S0907444913017162 |
0.594 |
|
| 2012 |
Kopecky V, Kohoutova J, Lapkouski M, Hofbauerova K, Sovova Z, Ettrichova O, González-Pérez S, Dulebo A, Kaftan D, Smatanova IK, Revuelta JL, Arellano JB, Carey J, Ettrich R. Raman spectroscopy adds complementary detail to the high-resolution x-ray crystal structure of photosynthetic PsbP from Spinacia oleracea. Plos One. 7: e46694. PMID 23071614 DOI: 10.1371/Journal.Pone.0046694 |
0.383 |
|
| 2012 |
Kishko I, Harish B, Zayats V, Reha D, Tenner B, Beri D, Gustavsson T, Ettrich R, Carey J. Biphasic kinetic behavior of E. coli WrbA, an FMN-dependent NAD(P)H:quinone oxidoreductase. Plos One. 7: e43902. PMID 22952804 DOI: 10.1371/Journal.Pone.0043902 |
0.607 |
|
| 2012 |
Carey J, Benoff B, Harish B, Yuan L, Lawson CL. Environment-dependent long-range structural distortion in a temperature-sensitive point mutant. Protein Science : a Publication of the Protein Society. 21: 63-74. PMID 22057811 DOI: 10.1002/Pro.759 |
0.641 |
|
| 2011 |
Strawn R, Stockner T, Melichercik M, Jin L, Xue WF, Carey J, Ettrich R. Synergy of molecular dynamics and isothermal titration calorimetry in studies of allostery. Methods in Enzymology. 492: 151-88. PMID 21333791 DOI: 10.1016/B978-0-12-381268-1.00017-3 |
0.704 |
|
| 2010 |
Strawn R, Melichercik M, Green M, Stockner T, Carey J, Ettrich R. Symmetric allosteric mechanism of hexameric Escherichia coli arginine repressor exploits competition between L-arginine ligands and resident arginine residues. Plos Computational Biology. 6: e1000801. PMID 20532206 DOI: 10.1371/Journal.Pcbi.1000801 |
0.733 |
|
| 2009 |
Wolfova J, Smatanova IK, Brynda J, Mesters JR, Lapkouski M, Kuty M, Natalello A, Chatterjee N, Chern SY, Ebbel E, Ricci A, Grandori R, Ettrich R, Carey J. Structural organization of WrbA in apo- and holoprotein crystals. Biochimica Et Biophysica Acta. 1794: 1288-98. PMID 19665595 DOI: 10.1016/J.Bbapap.2009.08.001 |
0.44 |
|
| 2009 |
Lapkouski M, Panjikar S, Janscak P, Smatanova IK, Carey J, Ettrich R, Csefalvay E. Structure of the motor subunit of type I restriction-modification complex EcoR124I. Nature Structural & Molecular Biology. 16: 94-5. PMID 19079266 DOI: 10.1038/Nsmb.1523 |
0.328 |
|
| 2009 |
Copie V, Tripet B, Goel A, Nerbert L, Carey J. Dynamical Studies Of A Temperature-Sensitive Mutant Of The Tryptophan Repressor Protein, L75F-TrpR Biophysical Journal. 96: 322a. DOI: 10.1016/J.Bpj.2008.12.1618 |
0.453 |
|
| 2007 |
Carey J, Lindman S, Bauer M, Linse S. Protein reconstitution and three-dimensional domain swapping: Benefits and constraints of covalency Protein Science. 16: 2317-2333. PMID 17962398 DOI: 10.1110/Ps.072985007 |
0.382 |
|
| 2007 |
Carey J, Brynda J, Wolfová J, Grandori R, Gustavsson T, Ettrich R, Smatanová IK. WrbA bridges bacterial flavodoxins and eukaryotic NAD(P)H:quinone oxidoreductases. Protein Science : a Publication of the Protein Society. 16: 2301-5. PMID 17893367 DOI: 10.1110/Ps.073018907 |
0.353 |
|
| 2007 |
Wolfová J, Mesters JR, Brynda J, Grandori R, Natalello A, Carey J, Kutá Smatanová I. Crystallization and preliminary diffraction analysis of Escherichia coli WrbA in complex with its cofactor flavin mononucleotide. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 571-5. PMID 17620713 DOI: 10.1107/S1744309107026103 |
0.32 |
|
| 2007 |
Natalello A, Doglia SM, Carey J, Grandori R. Role of flavin mononucleotide in the thermostability and oligomerization of Escherichia coli stress-defense protein WrbA. Biochemistry. 46: 543-53. PMID 17209564 DOI: 10.1021/Bi061769C |
0.429 |
|
| 2007 |
Wolfova J, Brynda J, Carey J, Smatanova IK. Crystallographic study ofE. coliWrbA protein in complex with its flavin cofactor Acta Crystallographica Section A. 63. DOI: 10.1107/S0108767307097322 |
0.31 |
|
| 2006 |
Ji HF, Shen L, Carey J, Grandori R, Zhang HY. Why WrbA is weaker than flavodoxin in binding FMN. A molecular modeling study Journal of Molecular Structure: Theochem. 764: 155-160. DOI: 10.1016/J.Theochem.2006.01.027 |
0.456 |
|
| 2005 |
Samalíková M, Carey J, Grandori R. Assembly of the hexameric Escherichia coli arginine repressor investigated by nano-electrospray ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 19: 2549-52. PMID 16106344 DOI: 10.1002/Rcm.2094 |
0.383 |
|
| 2005 |
Jin L, Xue WF, Fukayama JW, Yetter J, Pickering M, Carey J. Asymmetric allosteric activation of the symmetric ArgR hexamer. Journal of Molecular Biology. 346: 43-56. PMID 15663926 DOI: 10.1016/J.Jmb.2004.11.031 |
0.411 |
|
| 2005 |
Wolfova J, Grandori R, Kozma E, Chatterjee N, Carey J, Smatanova IK. Crystallization of the flavoprotein WrbA optimized by using additives and gels Journal of Crystal Growth. 284: 502-505. DOI: 10.1016/J.Jcrysgro.2005.07.043 |
0.341 |
|
| 2004 |
Xue W, Carey J, Linse S. Multi‐method global analysis of thermodynamics and kinetics in reconstitution of monellin Proteins. 57: 586-595. PMID 15382228 DOI: 10.1002/Prot.20241 |
0.368 |
|
| 2004 |
Pursglove SE, Fladvad M, Bellanda M, Moshref A, Henriksson M, Carey J, Sunnerhagen M. Biophysical properties of regions flanking the bHLH-Zip motif in the p22 Max protein. Biochemical and Biophysical Research Communications. 323: 750-759. PMID 15381064 DOI: 10.1016/J.Bbrc.2004.08.166 |
0.422 |
|
| 2004 |
Lawson CL, Benoff B, Berger T, Berman HM, Carey J. E. coli trp repressor forms a domain-swapped array in aqueous alcohol Structure. 12: 1099-1108. PMID 15274929 DOI: 10.1016/J.Str.2004.03.019 |
0.408 |
|
| 2004 |
Wolfova J, Kuta Smatanova I, Grandori R, Chatterjee N, Carey J. Crystallization of the novel flavodoxin-like protein, WrbA – on the way to three-dimensional structure Acta Crystallographica Section a Foundations of Crystallography. 60: s159-s159. DOI: 10.1107/S0108767304096862 |
0.33 |
|
| 2002 |
Tyler R, Pelczer I, Carey J, Copié V. Three-dimensional solution NMR structure of Apo-L75F-TrpR, a temperature-sensitive mutant of the tryptophan repressor protein. Biochemistry. 41: 11954-62. PMID 12356295 DOI: 10.1021/Bi020304T |
0.447 |
|
| 2001 |
Szwajkajzer D, Dai L, Fukayama JW, Abramczyk B, Fairman R, Carey J. Quantitative analysis of DNA binding by the Escherichia coli arginine repressor. Journal of Molecular Biology. 312: 949-62. PMID 11580241 DOI: 10.1006/Jmbi.2001.4941 |
0.717 |
|
| 2001 |
Scott SP, Weber IT, Harrison RW, Carey J, Tanaka JC. A functioning chimera of the cyclic nucleotide-binding domain from the bovine retinal rod ion channel and the DNA-binding domain from catabolite gene-activating protein. Biochemistry. 40: 7464-73. PMID 11412099 DOI: 10.1021/Bi002804X |
0.463 |
|
| 2000 |
Carey J. Globularity and protein function. Journal of Biomolecular Structure & Dynamics. 17: 87-88. PMID 22607410 DOI: 10.1080/07391102.2000.10506607 |
0.362 |
|
| 2000 |
Carey J. A systematic and general proteolytic method for defining structural and functional domains of proteins Methods in Enzymology. 328: 499-514. PMID 11075363 DOI: 10.1016/S0076-6879(00)28415-2 |
0.387 |
|
| 1999 |
Kang X, Carey J. Role of heme in structural organization of cytochrome c probed by semisynthesis Biochemistry. 38: 15944-15951. PMID 10625461 DOI: 10.1021/Bi9919089 |
0.389 |
|
| 1999 |
Wallqvist A, Lavoie TA, Chanatry JA, Covell DG, Carey J. Cooperative folding units of escherichia coli tryptophan repressor. Biophysical Journal. 77: 1619-26. PMID 10465773 DOI: 10.1016/S0006-3495(99)77010-4 |
0.393 |
|
| 1999 |
Kang X, Carey J. Structural organization in peptide fragments of cytochrome c by heme binding Journal of Molecular Biology. 285: 463-468. PMID 9878421 DOI: 10.1006/Jmbi.1998.2341 |
0.411 |
|
| 1999 |
Jin L, Fukayama JW, Pelczer I, Carey J. Long-Range Effects On Dynamics In A Temperature-Sensitive Mutant Of Trp Repressor Journal of Molecular Biology. 285: 361-378. PMID 9878412 DOI: 10.1006/Jmbi.1998.2311 |
0.417 |
|
| 1998 |
Sunnerhagen M, Denisov VP, Venu K, Bonvin AM, Carey J, Halle B, Otting G. Water molecules in DNA recognition I: hydration lifetimes of trp operator DNA in solution measured by NMR spectroscopy. Journal of Molecular Biology. 282: 847-58. PMID 9743631 DOI: 10.1006/Jmbi.1998.2033 |
0.319 |
|
| 1998 |
Grandori R, Khalifah P, Boice JA, Fairman R, Giovanielli K, Carey J. Biochemical characterization of WrbA, founding member of a new family of multimeric flavodoxin-like proteins. The Journal of Biological Chemistry. 273: 20960-6. PMID 9694845 DOI: 10.1074/Jbc.273.33.20960 |
0.655 |
|
| 1997 |
Grandori R, Struck K, Giovanielli K, Carey J. A three-step PCR protocol for construction of chimeric proteins. Protein Engineering. 10: 1099-100. PMID 9464575 DOI: 10.1093/Protein/10.9.1099 |
0.314 |
|
| 1997 |
Winters MA, Debenedetti PG, Carey J, Sparks HG, Sane SU, Przybycien TM. Long-term and high-temperature storage of supercritically-processed microparticulate protein powders. Pharmaceutical Research. 14: 1370-8. PMID 9358549 DOI: 10.1023/A:1012112503590 |
0.33 |
|
| 1997 |
Szwajkajzer D, Carey J. Molecular and biological constraints on ligand-binding affinity and specificity. Biopolymers. 44: 181-98. PMID 9354760 DOI: 10.1002/(Sici)1097-0282(1997)44:2<181::Aid-Bip5>3.0.Co;2-R |
0.368 |
|
| 1997 |
Sunnerhagen M, Nilges M, Otting G, Carey J. Solution structure of the DNA-binding domain and model for the complex of multifunctional hexameric arginine repressor with DNA Nature Structural Biology. 4: 819-826. PMID 9334747 DOI: 10.1038/Nsb1097-819 |
0.445 |
|
| 1996 |
Yang J, Gunasekera A, Lavoie TA, Jin L, Lewis DE, Carey J. In vivo and in vitro studies of TrpR-DNA interactions. Journal of Molecular Biology. 258: 37-52. PMID 8613990 DOI: 10.1006/Jmbi.1996.0232 |
0.409 |
|
| 1995 |
Yang J, Carey J. [20] Footprint phenotypes: Structural models of DNA-binding proteins from chemical modification analysis of DNA Methods in Enzymology. 259: 452-468. PMID 8538467 DOI: 10.1016/0076-6879(95)59056-0 |
0.436 |
|
| 1995 |
Grandori R, Lavoie TA, Pflumm M, Tian G, Niersbach H, Maas WK, Fairman R, Carey J. The DNA-binding domain of the hexameric arginine repressor. Journal of Molecular Biology. 254: 150-62. PMID 7490739 DOI: 10.1006/Jmbi.1995.0607 |
0.684 |
|
| 1994 |
Grandori R, Carey J. Two highly homologous putative DNA-binding proteins in yeast and E. coli. Trends in Biochemical Sciences. 19: 72. PMID 8160268 DOI: 10.1016/0968-0004(94)90037-X |
0.454 |
|
| 1994 |
Wu LC, Grandori R, Carey J. Autonomous subdomains in protein folding. Protein Science : a Publication of the Protein Society. 3: 369-71. PMID 8019408 DOI: 10.1002/Pro.5560030301 |
0.4 |
|
| 1994 |
Grandori R, Carey J. Six new candidate members of the alpha/beta twisted open-sheet family detected by sequence similarity to flavodoxin. Protein Science : a Publication of the Protein Society. 3: 2185-93. PMID 7756978 DOI: 10.1002/Pro.5560031204 |
0.405 |
|
| 1993 |
Lewis DEA, Carey J. Analysis of trp repressor-DNA interactions using gel electrophoresis. Electrophoresis. 14: 713-719. PMID 8404814 DOI: 10.1002/Elps.11501401113 |
0.378 |
|
| 1993 |
Wu LC, Laub PB, Elove GA, Carey J, Roder H. A noncovalent peptide complex as a model for an early folding intermediate of cytochrome c. Biochemistry. 32: 10271-10276. PMID 8399155 DOI: 10.1021/Bi00089A050 |
0.35 |
|
| 1993 |
Carey J. Thermodynamics of ligand binding to trp repressor Biochemistry. 32: 7302-7309. PMID 8343520 DOI: 10.1021/Bi00079A029 |
0.423 |
|
| 1993 |
Lawson CL, Carey J. Tandem Binding in Crystals of a Trp Repressor/Operator Half-Site Complex Nature. 366: 178-182. PMID 8232559 DOI: 10.1038/366178A0 |
0.421 |
|
| 1992 |
Tasayco ML, Carey J. Ordered self-assembly of polypeptide fragments to form nativelike dimeric trp repressor. Science. 255: 594-597. PMID 1736361 DOI: 10.1126/Science.1736361 |
0.37 |
|
| 1992 |
Tian G, Lim D, Carey J, Maas WK. Binding of the arginine repressor of Escherichia coli K12 to its operator sites. Journal of Molecular Biology. 226: 387-397. PMID 1640457 DOI: 10.1016/0022-2836(92)90954-I |
0.449 |
|
| 1989 |
Arrowsmith CH, Carey J, Treat-Clemons L, Jardetzky O. NMR assignments for the amino-terminal residues of trp repressor and their role in DNA binding. Biochemistry. 28: 3875-9. PMID 2665811 DOI: 10.1021/Bi00435A037 |
0.458 |
|
| 1988 |
Carey J. Gel retardation at low pH resolves trp repressor-DNA complexes for quantitative study Proceedings of the National Academy of Sciences of the United States of America. 85: 975-979. PMID 3277190 DOI: 10.1073/Pnas.85.4.975 |
0.426 |
|
| 1988 |
Klig LS, Carey J, Yanofsky C. trp Repressor interactions with the trparoH and trpR operators. Comparison of repressor binding in vitro and repression in vivo Journal of Molecular Biology. 202: 769-777. PMID 3050131 DOI: 10.1016/0022-2836(88)90557-8 |
0.372 |
|
| 1983 |
Carey J, Lowary PT, Uhlenbeck OC. Interaction of R17 coat protein with synthetic variants of its ribonucleic acid binding site Biochemistry. 22: 4723-4730. PMID 6626527 DOI: 10.1021/Bi00289A017 |
0.621 |
|
| 1983 |
Uhlenbeck OC, Carey J, Romaniuk PJ, Lowary PT, Beckett D. Interaction of r17 coat protein with its rna binding site for translational repression Journal of Biomolecular Structure and Dynamics. 1: 539-552. PMID 6401118 DOI: 10.1080/07391102.1983.10507460 |
0.704 |
|
| 1983 |
Carey J, Uhlenbeck OC. Kinetic and thermodynamic characterization of the R17 coat protein-ribonucleic acid interaction Biochemistry. 22: 2610-2615. PMID 6347248 DOI: 10.1021/Bi00280A003 |
0.585 |
|
| 1983 |
Carey J, Cameron V, De Haseth PL, Uhlenbeck OC. Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site Biochemistry. 22: 2601-2610. PMID 6347247 DOI: 10.1021/Bi00280A002 |
0.611 |
|
| 1983 |
Bauer CE, Carey J, Kasper LM, Lynn SP, Waechter DA, Gardner JF. Attenuation in Bacterial Operons Cold Spring Harbor Monograph Archive. 15: 65-89. DOI: 10.1101/087969176.15.65 |
0.324 |
|
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