| Year |
Citation |
Score |
| 2024 |
Foley NM, Harris AJ, Bredemeyer KR, Ruedi M, Puechmaille SJ, Teeling EC, Criscitiello MF, Murphy WJ. Karyotypic stasis and swarming influenced the evolution of viral tolerance in a species-rich bat radiation. Cell Genomics. 100482. PMID 38237599 DOI: 10.1016/j.xgen.2023.100482 |
0.802 |
|
| 2023 |
Bredemeyer KR, Hillier L, Harris AJ, Hughes GM, Foley NM, Lawless C, Carroll RA, Storer JM, Batzer MA, Rice ES, Davis BW, Raudsepp T, O'Brien SJ, Lyons LA, Warren WC, ... Murphy WJ, et al. Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution. Nature Genetics. 55: 1953-1963. PMID 37919451 DOI: 10.1038/s41588-023-01548-y |
0.796 |
|
| 2023 |
Foley NM, Mason VC, Harris AJ, Bredemeyer KR, Damas J, Lewin HA, Eizirik E, Gatesy J, Karlsson EK, Lindblad-Toh K, Springer MS, Murphy WJ, Andrews G, Armstrong JC, Bianchi M, ... ... Murphy WJ, et al. A genomic timescale for placental mammal evolution. Science (New York, N.Y.). 380: eabl8189. PMID 37104581 DOI: 10.1126/science.abl8189 |
0.786 |
|
| 2023 |
Dindot SV, Christian S, Murphy WJ, Berent A, Panagoulias J, Schlafer A, Ballard J, Radeva K, Robinson R, Myers L, Jepp T, Shaheen H, Hillman P, Konganti K, Hillhouse A, et al. An ASO therapy for Angelman syndrome that targets an evolutionarily conserved region at the start of the transcript. Science Translational Medicine. 15: eabf4077. PMID 36947593 DOI: 10.1126/scitranslmed.abf4077 |
0.768 |
|
| 2021 |
Bredemeyer KR, Seabury CM, Stickney MJ, McCarrey JR, vonHoldt BM, Murphy WJ. Rapid macrosatellite evolution promotes X-Linked hybrid male sterility in a feline interspecies cross. Molecular Biology and Evolution. PMID 34519828 DOI: 10.1093/molbev/msab274 |
0.799 |
|
| 2021 |
Brashear WA, Bredemeyer KR, Murphy WJ. Genomic architecture constrained placental mammal X Chromosome evolution. Genome Research. PMID 34301625 DOI: 10.1101/gr.275274.121 |
0.782 |
|
| 2020 |
Bredemeyer KR, Harris AJ, Li G, Zhao L, Foley NM, Roelke-Parker M, O'Brien SJ, Lyons LA, Warren WC, Murphy WJ. Ultracontinuous single haplotype genome assemblies for the domestic cat (Felis catus) and Asian leopard cat (Prionailurus bengalensis). The Journal of Heredity. PMID 33305796 DOI: 10.1093/jhered/esaa057 |
0.799 |
|
| 2020 |
Murphy WJ, Foley NM, Bredemeyer KR, Gatesy J, Springer MS. Phylogenomics and the Genetic Architecture of the Placental Mammal Radiation. Annual Review of Animal Biosciences. PMID 33228377 DOI: 10.1146/annurev-animal-061220-023149 |
0.798 |
|
| 2020 |
Buckley RM, Davis BW, Brashear WA, Farias FHG, Kuroki K, Graves T, Hillier LW, Kremitzki M, Li G, Middleton RP, Minx P, Tomlinson C, Lyons LA, Murphy WJ, Warren WC. A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism. Plos Genetics. 16: e1008926. PMID 33090996 DOI: 10.1371/journal.pgen.1008926 |
0.801 |
|
| 2020 |
Curry CJ, Davis BW, Bertola LD, White PA, Murphy WJ, Derr JN. Spatiotemporal Genetic Diversity of Lions Reveals the Influence of Habitat Fragmentation Across Africa. Molecular Biology and Evolution. PMID 32667997 DOI: 10.1093/Molbev/Msaa174 |
0.567 |
|
| 2020 |
Monika BP, Barbara K, Wojciech W, Magdalena W, Anna R, Angelika P, Izabela S, Murphy WJ. Fertile male tortoiseshell cat with true chimerism 38,XY/38,XY. Reproduction in Domestic Animals = Zuchthygiene. PMID 32574385 DOI: 10.1111/Rda.13752 |
0.3 |
|
| 2020 |
Allen R, Ryan H, Davis BW, King C, Frantz L, Irving-Pease E, Barnett R, Linderholm A, Loog L, Haile J, Lebrasseur O, White M, Kitchener AC, Murphy WJ, Larson G. A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids. Proceedings. Biological Sciences. 287: 20200690. PMID 32486979 DOI: 10.1098/Rspb.2020.0690 |
0.57 |
|
| 2020 |
Judge SJ, Yanagisawa M, Sturgill IR, Bateni SB, Gingrich AA, Foltz JA, Lee DA, Modiano JF, Monjazeb AM, Culp WTN, Rebhun RB, Murphy WJ, Kent MS, Canter RJ. Blood and tissue biomarker analysis in dogs with osteosarcoma treated with palliative radiation and intra-tumoral autologous natural killer cell transfer. Plos One. 15: e0224775. PMID 32084139 DOI: 10.1371/Journal.Pone.0224775 |
0.315 |
|
| 2020 |
Liberles DA, Chang B, Geiler-Samerotte K, Goldman A, Hey J, Kaçar B, Meyer M, Murphy W, Posada D, Storfer A. Emerging Frontiers in the Study of Molecular Evolution. Journal of Molecular Evolution. PMID 32060574 DOI: 10.1007/S00239-020-09932-6 |
0.324 |
|
| 2019 |
Springer MS, Foley NM, Brady PL, Gatesy J, Murphy WJ. Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary. Frontiers in Genetics. 10: 1241. PMID 31850081 DOI: 10.3389/Fgene.2019.01241 |
0.325 |
|
| 2019 |
Beichman AC, Koepfli KP, Li G, Murphy W, Dobrynin P, Kilver S, Tinker MT, Murray MJ, Johnson J, Lindblad-Toh K, Karlsson EK, Lohmueller KE, Wayne RK. Aquatic adaptation and depleted diversity: a deep dive into the genomes of the sea otter and giant otter. Molecular Biology and Evolution. PMID 31212313 DOI: 10.1093/Molbev/Msz101 |
0.345 |
|
| 2019 |
Li G, Figueiró HV, Eizirik E, Murphy WJ. Recombination-aware phylogenomics reveals the structured genomic landscape of hybridizing cat species. Molecular Biology and Evolution. PMID 31198971 DOI: 10.1093/Molbev/Msz139 |
0.393 |
|
| 2019 |
Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Ginns EI, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, ... ... Murphy WJ, et al. Author Correction: Applications and efficiencies of the first cat 63 K DNA array. Scientific Reports. 9: 4664. PMID 30858384 DOI: 10.1038/S41598-018-38073-6 |
0.508 |
|
| 2018 |
Brashear WA, Raudsepp T, Murphy W. Evolutionary conservation of Y chromosome ampliconic gene families despite extensive structural variation. Genome Research. PMID 30381290 DOI: 10.1101/Gr.237586.118 |
0.801 |
|
| 2018 |
Mason VC, Helgen KM, Murphy WJ. Comparative biogeography of forest-dependent mammals reveals paleo-forest corridors throughout Sundaland. The Journal of Heredity. PMID 30247638 DOI: 10.1093/Jhered/Esy046 |
0.767 |
|
| 2018 |
Canter RJ, Murphy WJ. A possible new pathway in natural killer cell activation also reveals the difficulty in determining human NK cell function in cancer. Journal For Immunotherapy of Cancer. 6: 79. PMID 30086799 DOI: 10.1186/S40425-018-0392-0 |
0.301 |
|
| 2018 |
Janečka JE, Davis BW, Ghosh S, Paria N, Das PJ, Orlando L, Schubert M, Nielsen MK, Stout TAE, Brashear W, Li G, Johnson CD, Metz RP, Zadjali AMA, Love CC, ... ... Murphy WJ, et al. Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes. Nature Communications. 9: 2945. PMID 30054462 DOI: 10.1038/S41467-018-05290-6 |
0.8 |
|
| 2018 |
Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, ... ... Murphy WJ, et al. Author Correction: Applications and efficiencies of the first cat 63K DNA array. Scientific Reports. 8: 8746. PMID 29867197 DOI: 10.1038/S41598-018-26885-5 |
0.508 |
|
| 2018 |
Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, ... ... Murphy WJ, et al. Applications and efficiencies of the first cat 63K DNA array. Scientific Reports. 8: 7024. PMID 29728693 DOI: 10.1038/S41598-018-25438-0 |
0.567 |
|
| 2018 |
Hughes GM, Boston EM, Finarelli JA, Murphy WJ, Higgins DG, Teeling EC. The birth and death of olfactory receptor gene families in mammalian niche adaptation. Molecular Biology and Evolution. PMID 29562344 DOI: 10.1093/Molbev/Msy028 |
0.358 |
|
| 2017 |
Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, ... ... Murphy WJ, et al. Genome-wide signatures of complex introgression and adaptive evolution in the big cats. Science Advances. 3: e1700299. PMID 28776029 DOI: 10.1126/Sciadv.1700299 |
0.563 |
|
| 2017 |
Janecka JE, Janecka JE, Yu-Guang Z, Di-Qiang L, Munkhtsog B, Bayaraa M, Galsandorj N, Wangchuk TR, Karmacharya D, McCarthy T, Li J, Zhi L, Uulu KZ, Gaur A, Kumar S, ... ... Murphy WJ, et al. Range-Wide Snow Leopard Phylogeography Supports Three Subspecies. The Journal of Heredity. PMID 28498961 DOI: 10.1093/Jhered/Esx044 |
0.3 |
|
| 2016 |
Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, ... ... Murphy WJ, et al. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology. 17: 251. PMID 27964752 DOI: 10.1186/S13059-016-1090-1 |
0.361 |
|
| 2016 |
Mason VC, Li G, Minx P, Schmitz J, Churakov G, Doronina L, Melin AD, Dominy NJ, Lim NT, Springer MS, Wilson RK, Warren WC, Helgen KM, Murphy WJ. Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates. Science Advances. 2: e1600633. PMID 27532052 DOI: 10.1126/Sciadv.1600633 |
0.802 |
|
| 2016 |
Li G, Hillier LW, Grahn R, Zimin AV, David VA, Menotti-Raymond M, Middleton R, Hannah S, Hendrickson S, Makunin A, O'Brien SJ, Minx P, Wilson RK, Lyons LA, Warren WC, ... Murphy WJ, et al. A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination. G3 (Bethesda, Md.). PMID 27172201 DOI: 10.1534/G3.116.028746 |
0.513 |
|
| 2016 |
Brandt AL, Grigorev K, Afanador-Hernández YM, Paulino LA, Murphy WJ, Núñez A, Komissarov A, Brandt JR, Dobrynin P, Hernández-Martich JD, María R, O'Brien SJ, Rodríguez LE, Martínez-Cruzado JC, Oleksyk TK, et al. Mitogenomic sequences support a north-south subspecies subdivision within Solenodon paradoxus. Mitochondrial Dna. Part a. Dna Mapping, Sequencing, and Analysis. 1-9. PMID 27159724 DOI: 10.3109/24701394.2016.1167891 |
0.5 |
|
| 2016 |
Gatesy J, Meredith RW, Janecka JE, Simmons MP, Murphy WJ, Springer MS. Resolution of a concatenation/coalescence kerfuffle: Partitioned coalescence support and a robust family-level tree for Mammalia Cladistics. DOI: 10.1111/Cla.12170 |
0.31 |
|
| 2015 |
Halley YA, Oldeschulte DL, Bhattarai EK, Hill J, Metz RP, Johnson CD, Presley SM, Ruzicka RE, Rollins D, Peterson MJ, Murphy WJ, Seabury CM. Northern Bobwhite (Colinus virginianus) Mitochondrial Population Genomics Reveals Structure, Divergence, and Evidence for Heteroplasmy. Plos One. 10: e0144913. PMID 26713762 DOI: 10.1371/Journal.Pone.0144913 |
0.34 |
|
| 2015 |
Li G, Davis B, Eizirik E, Murphy W. Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae). Genome Research. PMID 26518481 DOI: 10.1101/Gr.186668.114 |
0.632 |
|
| 2015 |
Springer MS, Signore AV, Paijmans JL, Vélez-Juarbe J, Domning DP, Bauer CE, He K, Crerar L, Campos PF, Murphy WJ, Meredith RW, Gatesy J, Willerslev E, MacPhee RD, Hofreiter M, et al. Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia. Molecular Phylogenetics and Evolution. 91: 178-93. PMID 26050523 DOI: 10.1016/J.Ympev.2015.05.022 |
0.333 |
|
| 2015 |
Davis BW, Seabury CM, Brashear WA, Li G, Roelke-Parker M, Murphy WJ. Mechanisms Underlying Mammalian Hybrid Sterility in Two Feline Interspecies Models. Molecular Biology and Evolution. PMID 26006188 DOI: 10.1093/Molbev/Msv124 |
0.793 |
|
| 2014 |
Soh YQ, Alföldi J, Pyntikova T, Brown LG, Graves T, Minx PJ, Fulton RS, Kremitzki C, Koutseva N, Mueller JL, Rozen S, Hughes JF, Owens E, Womack JE, Murphy WJ, et al. Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes. Cell. 159: 800-13. PMID 25417157 DOI: 10.1016/J.Cell.2014.09.052 |
0.352 |
|
| 2014 |
Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, ... ... Murphy WJ, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 17230-5. PMID 25385592 DOI: 10.1073/Pnas.1410083111 |
0.683 |
|
| 2014 |
Hayden S, Bekaert M, Goodbla A, Murphy WJ, Dávalos LM, Teeling EC. A cluster of olfactory receptor genes linked to frugivory in bats. Molecular Biology and Evolution. 31: 917-27. PMID 24441035 DOI: 10.1093/Molbev/Msu043 |
0.318 |
|
| 2014 |
Dubovsky JA, Flynn R, Du J, Harrington BK, Zhong Y, Yang C, Towns W, Lehman A, Johnson A, Devine S, Jaglowski S, Serody JS, Murphy WJ, Munn DH, Luznik L, et al. Abstract 2591: Ibrutinib can reverse established chronic graft-versus-host disease, which is dependent upon IL-2 inducible T-cell kinase (ITK) and Bruton's tyrosine kinase (BTK)-driven lymphocyte activation Cancer Research. 74: 2591-2591. DOI: 10.1158/1538-7445.Am2014-2591 |
0.31 |
|
| 2013 |
Sungur CM, Murphy WJ. Utilization of mouse models to decipher natural killer cell biology and potential clinical applications. Hematology / the Education Program of the American Society of Hematology. American Society of Hematology. Education Program. 2013: 227-33. PMID 24319185 DOI: 10.1182/Asheducation-2013.1.227 |
0.307 |
|
| 2013 |
Li G, Davis BW, Raudsepp T, Pearks Wilkerson AJ, Mason VC, Ferguson-Smith M, O'Brien PC, Waters PD, Murphy WJ. Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution. Genome Research. 23: 1486-95. PMID 23788650 DOI: 10.1101/Gr.154286.112 |
0.798 |
|
| 2013 |
Hughes GM, Gang L, Murphy WJ, Higgins DG, Teeling EC. Using Illumina next generation sequencing technologies to sequence multigene families in de novo species. Molecular Ecology Resources. 13: 510-21. PMID 23480365 DOI: 10.1111/1755-0998.12087 |
0.363 |
|
| 2013 |
Flynn R, Du J, Veenstra R, Panoskaltsis-Mortari A, Price A, Taylor PA, Freeman GJ, Browning JL, Serody J, Murphy WJ, Munn D, Sarantopoulos S, Luznik L, Maillard I, Koreth J, et al. Germinal Center Generation and Maintenance By T Follicular Helper Cells Is Required For The Development Of Chronic Gvhd Associated Bronchiolitis Obliterans In a Preclinical Model Blood. 122: 292-292. DOI: 10.1182/Blood.V122.21.292.292 |
0.311 |
|
| 2013 |
Aguilar EG, Sungur CM, Zamora AE, Murphy WJ. Evidence That Novel NK-NK Cell Subset Regulation Exists With Regard To Effects In Tumor and Viral Models Blood. 122: 1038-1038. DOI: 10.1182/Blood.V122.21.1038.1038 |
0.301 |
|
| 2012 |
Springer MS, Meredith RW, Gatesy J, Emerling CA, Park J, Rabosky DL, Stadler T, Steiner C, Ryder OA, JaneÄka JE, Fisher CA, Murphy WJ. Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. Plos One. 7: e49521. PMID 23166696 DOI: 10.1371/Journal.Pone.0049521 |
0.332 |
|
| 2012 |
Janecka J, Chowdhary B, Murphy W. Exploring the correlations between sequence evolution rate and phenotypic divergence across the Mammalian tree provides insights into adaptive evolution Journal of Biosciences. 37: 897-909. PMID 23107925 DOI: 10.1007/S12038-012-9254-Y |
0.335 |
|
| 2011 |
Mason VC, Li G, Helgen KM, Murphy WJ. Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens. Genome Research. 21: 1695-704. PMID 21880778 DOI: 10.1101/Gr.120196.111 |
0.782 |
|
| 2011 |
Paria N, Raudsepp T, Pearks Wilkerson AJ, O'Brien PC, Ferguson-Smith MA, Love CC, Arnold C, Rakestraw P, Murphy WJ, Chowdhary BP. A gene catalogue of the euchromatic male-specific region of the horse Y chromosome: comparison with human and other mammals. Plos One. 6: e21374. PMID 21799735 DOI: 10.1371/Journal.Pone.0021374 |
0.367 |
|
| 2011 |
Jane?ka JE, Tewes ME, Laack LL, Caso A, Grassman LI, Haines AM, Shindle DB, Davis BW, Murphy WJ, Honeycutt RL. Reduced genetic diversity and isolation of remnant ocelot populations occupying a severely fragmented landscape in southern Texas Animal Conservation. 14: 608-619. DOI: 10.1111/J.1469-1795.2011.00475.X |
0.554 |
|
| 2010 |
Brinkmeyer-Langford CL, Murphy WJ, Childers CP, Skow LC. A conserved segmental duplication within ELA. Animal Genetics. 41: 186-95. PMID 21070294 DOI: 10.1111/J.1365-2052.2010.02137.X |
0.344 |
|
| 2010 |
Li G, Janecka JE, Murphy WJ. Accelerated evolution of CES7, a gene encoding a novel major urinary protein in the cat family. Molecular Biology and Evolution. 28: 911-20. PMID 20966115 DOI: 10.1093/Molbev/Msq281 |
0.328 |
|
| 2010 |
Davis BW, Li G, Murphy WJ. Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae). Molecular Phylogenetics and Evolution. 56: 64-76. PMID 20138224 DOI: 10.1016/J.Ympev.2010.01.036 |
0.622 |
|
| 2010 |
Eizirik E, Murphy WJ, Koepfli KP, Johnson WE, Dragoo JW, Wayne RK, O'Brien SJ. Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Molecular Phylogenetics and Evolution. 56: 49-63. PMID 20138220 DOI: 10.1016/J.Ympev.2010.01.033 |
0.478 |
|
| 2010 |
Hayden S, Bekaert M, Crider TA, Mariani S, Murphy WJ, Teeling EC. Ecological adaptation determines functional mammalian olfactory subgenomes. Genome Research. 20: 1-9. PMID 19952139 DOI: 10.1101/Gr.099416.109 |
0.336 |
|
| 2009 |
Meredith RW, Gatesy J, Murphy WJ, Ryder OA, Springer MS. Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals. Plos Genetics. 5: e1000634. PMID 19730686 DOI: 10.1371/Journal.Pgen.1000634 |
0.302 |
|
| 2009 |
Miller W, Drautz DI, Janecka JE, Lesk AM, Ratan A, Tomsho LP, Packard M, Zhang Y, McClellan LR, Qi J, Zhao F, Gilbert MT, Dalén L, Arsuaga JL, Ericson PG, ... ... Murphy WJ, et al. The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). Genome Research. 19: 213-20. PMID 19139089 DOI: 10.1101/Gr.082628.108 |
0.342 |
|
| 2009 |
Collier GE, Murphy WJ, Espinoza M. Phylogeography of the genus Epiplatys (Aplocheiloidea: Cyprinodontiformes). Molecular Phylogenetics and Evolution. 50: 190-6. PMID 18984059 DOI: 10.1016/J.Ympev.2008.10.006 |
0.564 |
|
| 2009 |
Davis BW, Raudsepp T, Pearks Wilkerson AJ, Agarwala R, Schäffer AA, Houck M, Chowdhary BP, Murphy WJ. A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae. Genomics. 93: 299-304. PMID 18951970 DOI: 10.1016/J.Ygeno.2008.09.010 |
0.613 |
|
| 2009 |
Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/Jhered/Esp086 |
0.322 |
|
| 2008 |
Pearks Wilkerson AJ, Raudsepp T, Graves T, Albracht D, Warren W, Chowdhary BP, Skow LC, Murphy WJ. Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome. Genomics. 92: 329-38. PMID 18674610 DOI: 10.1016/J.Ygeno.2008.06.012 |
0.343 |
|
| 2008 |
Page JE, Murphy WJ. Construction of radiation hybrid panels. Methods in Molecular Biology (Clifton, N.J.). 422: 51-64. PMID 18629660 DOI: 10.1007/978-1-59745-581-7_4 |
0.35 |
|
| 2008 |
Holmes RS, Chan J, Cox LA, Murphy WJ, VandeBerg JL. Opossum carboxylesterases: sequences, phylogeny and evidence for CES gene duplication events predating the marsupial-eutherian common ancestor. Bmc Evolutionary Biology. 8: 54. PMID 18289373 DOI: 10.1186/1471-2148-8-54 |
0.335 |
|
| 2008 |
Graphodatsky AS, Yang F, Dobigny G, Romanenko SA, Biltueva LS, Perelman PL, Beklemisheva VR, Alkalaeva EZ, Serdukova NA, Ferguson-Smith MA, Murphy WJ, Robinson TJ. Tracking genome organization in rodents by Zoo-FISH. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 261-74. PMID 18266061 DOI: 10.1007/S10577-007-1191-5 |
0.345 |
|
| 2008 |
Janečka JE, Jackson R, Yuquang Z, Diqiang L, Munkhtsog B, Buckley-Beason V, Murphy WJ. Population monitoring of snow leopards using noninvasive collection of scat samples: a pilot study Animal Conservation. 11: 401-411. DOI: 10.1111/J.1469-1795.2008.00195.X |
0.312 |
|
| 2007 |
Murphy WJ, O'Brien SJ. Designing and optimizing comparative anchor primers for comparative gene mapping and phylogenetic inference Nature Protocols. 2: 3022-3030. PMID 18007639 DOI: 10.1038/Nprot.2007.429 |
0.521 |
|
| 2007 |
Miller W, Rosenbloom K, Hardison RC, Hou M, Taylor J, Raney B, Burhans R, King DC, Baertsch R, Blankenberg D, Kosakovsky Pond SL, Nekrutenko A, Giardine B, Harris RS, Tyekucheva S, ... ... Murphy WJ, et al. 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Research. 17: 1797-808. PMID 17984227 DOI: 10.1101/Gr.6761107 |
0.367 |
|
| 2007 |
Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, Clamp M, Chang J, Stephens R, Neelam B, Volfovsky N, Schäffer AA, Agarwala R, Narfström K, Murphy WJ, et al. Initial sequence and comparative analysis of the cat genome. Genome Research. 17: 1675-89. PMID 17975172 DOI: 10.1101/Gr.6380007 |
0.548 |
|
| 2007 |
Janecka JE, Miller W, Pringle TH, Wiens F, Zitzmann A, Helgen KM, Springer MS, Murphy WJ. Molecular and genomic data identify the closest living relative of primates. Science (New York, N.Y.). 318: 792-4. PMID 17975064 DOI: 10.1126/Science.1147555 |
0.377 |
|
| 2007 |
Springer MS, Burk-Herrick A, Meredith R, Eizirik E, Teeling E, O'Brien SJ, Murphy WJ. The adequacy of morphology for reconstructing the early history of placental mammals. Systematic Biology. 56: 673-84. PMID 17661234 DOI: 10.1080/10635150701491149 |
0.428 |
|
| 2007 |
Springer MS, Murphy WJ. Mammalian evolution and biomedicine: new views from phylogeny. Biological Reviews of the Cambridge Philosophical Society. 82: 375-92. PMID 17624960 DOI: 10.1111/J.1469-185X.2007.00016.X |
0.362 |
|
| 2007 |
Vàzquez-Salat N, Yuhki N, Beck T, O'Brien SJ, Murphy WJ. Gene conversion between mammalian CCR2 and CCR5 chemokine receptor genes: a potential mechanism for receptor dimerization. Genomics. 90: 213-24. PMID 17544254 DOI: 10.1016/J.Ygeno.2007.04.009 |
0.497 |
|
| 2007 |
Miller-Butterworth CM, Murphy WJ, O'Brien SJ, Jacobs DS, Springer MS, Teeling EC. A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, miniopterus. Molecular Biology and Evolution. 24: 1553-61. PMID 17449895 DOI: 10.1093/Molbev/Msm076 |
0.481 |
|
| 2007 |
Murphy WJ, Pringle TH, Crider TA, Springer MS, Miller W. Using genomic data to unravel the root of the placental mammal phylogeny. Genome Research. 17: 413-21. PMID 17322288 DOI: 10.1101/Gr.5918807 |
0.387 |
|
| 2007 |
Murphy WJ, Davis B, David VA, Agarwala R, Schäffer AA, Pearks Wilkerson AJ, Neelam B, O'Brien SJ, Menotti-Raymond M. A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes. Genomics. 89: 189-96. PMID 16997530 DOI: 10.1016/J.Ygeno.2006.08.007 |
0.675 |
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| 2006 |
Kohn MH, Murphy WJ, Ostrander EA, Wayne RK. Genomics and conservation genetics. Trends in Ecology & Evolution. 21: 629-37. PMID 16908089 DOI: 10.1016/J.Tree.2006.08.001 |
0.347 |
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| 2006 |
Fyfe JC, Menotti-Raymond M, David VA, Brichta L, Schäffer AA, Agarwala R, Murphy WJ, Wedemeyer WJ, Gregory BL, Buzzell BG, Drummond MC, Wirth B, O'Brien SJ. An approximately 140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival. Genome Research. 16: 1084-90. PMID 16899656 DOI: 10.1101/Gr.5268806 |
0.499 |
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| 2006 |
Murphy WJ, Pearks Wilkerson AJ, Raudsepp T, Agarwala R, Schäffer AA, Stanyon R, Chowdhary BP. Novel gene acquisition on carnivore Y chromosomes. Plos Genetics. 2: e43. PMID 16596168 DOI: 10.1371/Journal.Pgen.0020043 |
0.382 |
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| 2006 |
Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, Teeling E, O'Brien SJ. The late Miocene radiation of modern Felidae: a genetic assessment. Science (New York, N.Y.). 311: 73-7. PMID 16400146 DOI: 10.1126/Science.1122277 |
0.533 |
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| 2005 |
Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, Auvil L, Beever JE, Chowdhary BP, Galibert F, Gatzke L, Hitte C, Meyers SN, Milan D, Ostrander EA, Pape G, et al. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science (New York, N.Y.). 309: 613-7. PMID 16040707 DOI: 10.1126/Science.1111387 |
0.534 |
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| 2005 |
Murphy WJ, Agarwala R, Schäffer AA, Stephens R, Smith C, Crumpler NJ, David VA, O'Brien SJ. A rhesus macaque radiation hybrid map and comparative analysis with the human genome. Genomics. 86: 383-95. PMID 16039092 DOI: 10.1016/J.Ygeno.2005.05.013 |
0.536 |
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| 2005 |
Roca AL, Nash WG, Menninger JC, Murphy WJ, O'Brien SJ. Insertional polymorphisms of endogenous feline leukemia viruses. Journal of Virology. 79: 3979-86. PMID 15767400 DOI: 10.1128/Jvi.79.7.3979-3986.2005 |
0.523 |
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| 2005 |
Teeling EC, Springer MS, Madsen O, Bates P, O'brien SJ, Murphy WJ. A molecular phylogeny for bats illuminates biogeography and the fossil record. Science (New York, N.Y.). 307: 580-4. PMID 15681385 DOI: 10.1126/Science.1105113 |
0.49 |
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| 2005 |
He Q, Lowrie C, Shelton GD, Castellani RJ, Menotti-Raymond M, Murphy W, O'Brien SJ, Swanson WF, Fyfe JC. Inherited motor neuron disease in domestic cats: a model of spinal muscular atrophy. Pediatric Research. 57: 324-30. PMID 15635053 DOI: 10.1203/01.Pdr.0000153625.46892.6F |
0.432 |
|
| 2005 |
Beck TW, Menninger J, Murphy WJ, Nash WG, O'brien SJ, Yuhki N. The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region. Immunogenetics. 56: 702-9. PMID 15592824 DOI: 10.1007/S00251-004-0742-6 |
0.469 |
|
| 2005 |
Murphy WJ, Bareo I, Hanash AM, Welniak LA, Sun K, Blazar BR, Levy RB. Suppression of NK Cell-Mediated Bone Marrow Cell Rejection by CD4+CD25+ Regulatory T Cells: Linkage of Adaptive to Innate Responses. Blood. 106: 2195-2195. DOI: 10.1182/Blood.V106.11.2195.2195 |
0.303 |
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| 2004 |
Murphy WJ, Pevzner PA, O'Brien SJ. Mammalian phylogenomics comes of age. Trends in Genetics : Tig. 20: 631-9. PMID 15522459 DOI: 10.1016/J.Tig.2004.09.005 |
0.545 |
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| 2004 |
Pecon-Slattery J, Pearks Wilkerson AJ, Murphy WJ, O'Brien SJ. Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree. Molecular Biology and Evolution. 21: 2299-309. PMID 15329385 DOI: 10.1093/Molbev/Msh241 |
0.38 |
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| 2004 |
Roca AL, Bar-Gal GK, Eizirik E, Helgen KM, Maria R, Springer MS, O'Brien SJ, Murphy WJ. Mesozoic origin for West Indian insectivores. Nature. 429: 649-51. PMID 15190349 DOI: 10.1038/Nature02597 |
0.495 |
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| 2004 |
Kuznetsov SB, Matveeva NM, Murphy WJ, O'Brien SJ, Serov OL. Mapping of 53 loci in American mink (Mustela vison). The Journal of Heredity. 94: 386-91. PMID 14557391 DOI: 10.1093/Jhered/Esg084 |
0.315 |
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| 2003 |
Murphy WJ, Bourque G, Tesler G, Pevzner P, O'Brien SJ. Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps. Human Genomics. 1: 30-40. PMID 15601531 DOI: 10.1186/1479-7364-1-1-30 |
0.536 |
|
| 2003 |
Menotti-Raymond M, David VA, Agarwala R, Schäffer AA, Stephens R, O'Brien SJ, Murphy WJ. Radiation hybrid mapping of 304 novel microsatellites in the domestic cat genome. Cytogenetic and Genome Research. 102: 272-6. PMID 14970716 DOI: 10.1159/000075762 |
0.36 |
|
| 2003 |
O'Brien SJ, Murphy WJ. A dog's breakfast? Science. 301: 1854-1855. PMID 14512608 DOI: 10.1126/Science.1090531 |
0.512 |
|
| 2003 |
Teeling EC, Madsen O, Murphy WJ, Springer MS, O'Brien SJ. Nuclear gene sequences confirm an ancient link between New Zealand's short-tailed bat and South American noctilionoid bats. Molecular Phylogenetics and Evolution. 28: 308-19. PMID 12878467 DOI: 10.1016/S1055-7903(03)00117-9 |
0.51 |
|
| 2003 |
Murphy WJ, Frönicke L, O'Brien SJ, Stanyon R. The origin of human chromosome 1 and its homologs in placental mammals. Genome Research. 13: 1880-8. PMID 12869576 DOI: 10.1101/Gr.1022303 |
0.523 |
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| 2003 |
Menotti-Raymond M, David VA, Roelke ME, Chen ZQ, Menotti KA, Sun S, Schäffer AA, Tomlin JF, Agarwala R, O'Brien SJ, Murphy WJ. Second-generation integrated genetic linkage/radiation hybrid maps of the domestic cat (Felis catus). The Journal of Heredity. 94: 95-106. PMID 12692169 DOI: 10.1093/Jhered/Esg008 |
0.31 |
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| 2003 |
Springer MS, Murphy WJ, Eizirik E, O'Brien SJ. Placental mammal diversification and the Cretaceous-Tertiary boundary. Proceedings of the National Academy of Sciences of the United States of America. 100: 1056-61. PMID 12552136 DOI: 10.1073/Pnas.0334222100 |
0.474 |
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| 2002 |
O'Brien SJ, Menotti-Raymond M, Murphy WJ, Yuhki N. The Feline Genome Project. Annual Review of Genetics. 36: 657-86. PMID 12359739 DOI: 10.1146/Annurev.Genet.36.060602.145553 |
0.538 |
|
| 2002 |
Murphy WJ, Page JE, Smith C, Desrosiers RC, O'Brien SJ. A radiation hybrid mapping panel for the rhesus macaque. The Journal of Heredity. 92: 516-9. PMID 11948222 DOI: 10.1093/Jhered/92.6.516 |
0.339 |
|
| 2001 |
O'Brien SJ, Eizirik E, Murphy WJ. Genomics. On choosing mammalian genomes for sequencing. Science (New York, N.Y.). 292: 2264-6. PMID 11423643 DOI: 10.1126/Science.1059393 |
0.351 |
|
| 2001 |
Murphy WJ, Stanyon R, O'Brien SJ. Evolution of mammalian genome organization inferred from comparative gene mapping Genome Biology. 2. PMID 11423011 DOI: 10.1186/Gb-2001-2-6-Reviews0005 |
0.388 |
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| 2001 |
Eizirik E, Murphy WJ, O'Brien SJ. Molecular dating and biogeography of the early placental mammal radiation. The Journal of Heredity. 92: 212-9. PMID 11396581 DOI: 10.1093/Jhered/92.2.212 |
0.332 |
|
| 2001 |
Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ. Molecular phylogenetics and the origins of placental mammals. Nature. 409: 614-8. PMID 11214319 DOI: 10.1038/35054550 |
0.335 |
|
| 2000 |
Murphy WJ, Sun S, Chen Z, Yuhki N, Hirschmann D, Menotti-Raymond M, O'Brien SJ. A radiation hybrid map of the cat genome: implications for comparative mapping. Genome Research. 10: 691-702. PMID 10810092 DOI: 10.1101/Gr.10.5.691 |
0.375 |
|
| 2000 |
Pecon Slattery J, Murphy WJ, O'Brien SJ. Patterns of diversity among sine elements isolated from three Y- chromosome genes in carnivores [1] Molecular Biology and Evolution. 17: 825-829. PMID 10779543 DOI: 10.1093/Oxfordjournals.Molbev.A026361 |
0.302 |
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| 2000 |
Murphy WJ, Sun S, Chen ZQ, Pecon-Slattery J, O'Brien SJ. Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping. Genome Research. 9: 1223-30. PMID 10613845 DOI: 10.1101/Gr.9.12.1223 |
0.334 |
|
| 1999 |
Murphy WJ, Thomerson JE, Collier GE. Phylogeny of the Neotropical killifish family Rivulidae (Cyprinodontiformes, Aplocheiloidei) inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution. 13: 289-301. PMID 10603257 DOI: 10.1006/Mpev.1999.0656 |
0.588 |
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| 1999 |
O'Brien SJ, Eisenberg JF, Miyamoto M, Hedges SB, Kumar S, Wilson DE, Menotti-Raymond M, Murphy WJ, Nash WG, Lyons LA, Menninger JC, Stanyon R, Wienberg J, Copeland NG, Jenkins NA, et al. Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart. Science (New York, N.Y.). 286: 463-78. PMID 10577209 DOI: 10.1126/Science.286.5439.463 |
0.398 |
|
| 1999 |
Murphy WJ, Collier GE. Phylogenetic relationships of African killifishes in the genera Aphyosemion and Fundulopanchax inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution. 11: 351-60. PMID 10196077 DOI: 10.1006/Mpev.1998.0566 |
0.598 |
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| 1999 |
Murphy WJ, Nguyen TN, Taylor EB, Collier GE. Mitochondrial DNA phylogeny of West African aplocheiloid killifishes (Cyprinodontiformes, Aplocheilidae). Molecular Phylogenetics and Evolution. 11: 343-50. PMID 10196076 DOI: 10.1006/Mpev.1998.0567 |
0.573 |
|
| 1999 |
Murphy WJ, Menotti-Raymond M, Lyons LA, Thompson MA, O'Brien SJ. Development of a feline whole genome radiation hybrid panel and comparative mapping of human chromosome 12 and 22 loci Genomics. 57: 1-8. PMID 10191078 DOI: 10.1006/Geno.1998.5695 |
0.371 |
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| 1999 |
O'Brien SJ, Menotti-Raymond M, Murphy WJ, Nash WG, Wienberg J, Stanyon R, Copeland NG, Jenkins NA, Womack JE, Marshall Graves JA. The Promise of Comparative Genomics in Mammals Science. 286: 458-481. DOI: 10.1126/Science.286.5439.458 |
0.367 |
|
| 1997 |
Murphy WJ, Collier GE. A molecular phylogeny for aplocheiloid fishes (Atherinomorpha, Cyprinodontiformes): the role of vicariance and the origins of annualism. Molecular Biology and Evolution. 14: 790-9. PMID 9254916 DOI: 10.1093/Oxfordjournals.Molbev.A025819 |
0.336 |
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| 1997 |
Laubach VE, Zhang CX, Russell SW, Murphy WJ, Sherman PA. Analysis of expression and promoter function of the human inducible nitric oxide synthase gene in DLD-1 cells and monkey hepatocytes. Biochimica Et Biophysica Acta. 1351: 287-95. PMID 9130592 DOI: 10.1016/S0167-4781(96)06909-6 |
0.313 |
|
| 1997 |
Murphy WJ, Taub DD, Longo DL. The huPBL-SCID mouse as a means to examine human immune function in vivo. Seminars in Immunology. 8: 233-41. PMID 8883146 DOI: 10.1006/Smim.1996.0029 |
0.305 |
|
| 1996 |
Murphy WJ, Collier GE. Phylogenetic relationships within the aplocheiloid fish genus Rivulus (Cyprinodontiformes, Rivulidae): implications for Caribbean and Central American biogeography. Molecular Biology and Evolution. 13: 642-9. PMID 8676738 DOI: 10.1093/Oxfordjournals.Molbev.A025624 |
0.307 |
|
| 1994 |
Murphy WJ, Taub DD, Anver M, Conlon K, Oppenheim JJ, Kelvin DJ, Longo DL. Human RANTES induces the migration of human T lymphocytes into the peripheral tissues of mice with severe combined immune deficiency European Journal of Immunology. 24: 1823-1827. PMID 7519996 DOI: 10.1002/Eji.1830240815 |
0.308 |
|
| 1984 |
Parslow TG, Blair DL, Murphy WJ, Granner DK. Structure of the 5' ends of immunoglobulin genes: A novel conserved sequence Proceedings of the National Academy of Sciences of the United States of America. 81: 2650-2654. PMID 6425835 DOI: 10.1073/Pnas.81.9.2650 |
0.326 |
|
| 1983 |
Leder P, Battey J, Lenoir G, Moulding C, Murphy W, Potter H, Stewart T, Taub R. Translocations among antibody genes in human cancer. Science (New York, N.Y.). 222: 765-71. PMID 6356357 DOI: 10.1126/Science.6356357 |
0.302 |
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