Angel E. Garcia - Publications

Affiliations: 
Physics Rensselaer Polytechnic Institute, Troy, NY, United States 

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Zwarycz AS, Fossat MJ, Akanyeti O, Lin Z, Rosenman DJ, Garcia AE, Royer CA, Mills KV, Wang C. V67L Mutation Fills Internal Cavity to Stabilize RecA Mtu Intein. Biochemistry. PMID 28488863 DOI: 10.1021/acs.biochem.6b01264  0.32
2017 Kitazawa S, Fossat MJ, McCallum SA, Garcia AE, Royer CA. NMR and Computation Reveal a Pressure-Sensitive Folded Conformation of Trp-Cage. The Journal of Physical Chemistry. B. PMID 28107009 DOI: 10.1021/acs.jpcb.6b11810  0.32
2016 Fossat MJ, Dao TP, Jenkins K, Dellarole M, Yang Y, McCallum SA, Garcia AE, Barrick D, Roumestand C, Royer CA. High-Resolution Mapping of a Repeat Protein Folding Free Energy Landscape. Biophysical Journal. 111: 2368-2376. PMID 27926838 DOI: 10.1016/j.bpj.2016.08.027  0.32
2015 Rosenman DJ, Wang C, Garcia AE. Characterization of Aβ Monomers Through the Convergence of Ensemble Properties Among Simulations with Multiple Force Fields. The Journal of Physical Chemistry. B. PMID 26562747 DOI: 10.1021/acs.jpcb.5b09379  0.32
2014 Herce HD, Garcia AE, Cardoso MC. Fundamental molecular mechanism for the cellular uptake of guanidinium-rich molecules. Journal of the American Chemical Society. 136: 17459-67. PMID 25405895 DOI: 10.1021/ja507790z  0.44
2014 Akabori K, Huang K, Treece BW, Jablin MS, Maranville B, Woll A, Nagle JF, Garcia AE, Tristram-Nagle S. HIV-1 Tat membrane interactions probed using X-ray and neutron scattering, CD spectroscopy and MD simulations. Biochimica Et Biophysica Acta. 1838: 3078-87. PMID 25148702 DOI: 10.1016/j.bbamem.2014.08.014  0.44
2014 Jimenez-Cruz CA, Garcia AE. Equilibrium thermodynamics and folding kinetics of a short, fast-folding, beta-hairpin. Physical Chemistry Chemical Physics : Pccp. 16: 6422-9. PMID 24472872 DOI: 10.1039/c3cp54336f  0.44
2013 Jimenez-Cruz CA, Garcia AE. Reconstructing the Most Probable Folding Transition Path from Replica Exchange Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 9: 3750-5. PMID 26584126 DOI: 10.1021/ct400170x  0.44
2013 Roche J, Dellarole M, Caro JA, Norberto DR, Garcia AE, Garcia-Moreno B, Roumestand C, Royer CA. Effect of internal cavities on folding rates and routes revealed by real-time pressure-jump NMR spectroscopy. Journal of the American Chemical Society. 135: 14610-8. PMID 23987660 DOI: 10.1021/ja406682e  0.44
2013 Stephenson W, Asare-Okai PN, Chen AA, Keller S, Santiago R, Tenenbaum SA, Garcia AE, Fabris D, Li PT. The essential role of stacking adenines in a two-base-pair RNA kissing complex. Journal of the American Chemical Society. 135: 5602-11. PMID 23517345 DOI: 10.1021/ja310820h  0.44
2013 Tripathi S, Makhatadze GI, Garcia AE. Backtracking due to residual structure in the unfolded state changes the folding of the third fibronectin type III domain from tenascin-C. The Journal of Physical Chemistry. B. 117: 800-10. PMID 23268597 DOI: 10.1021/jp310046k  0.44
2012 Canchi DR, Jayasimha P, Rau DC, Makhatadze GI, Garcia AE. Molecular mechanism for the preferential exclusion of TMAO from protein surfaces. The Journal of Physical Chemistry. B. 116: 12095-104. PMID 22970901 DOI: 10.1021/jp304298c  0.44
2012 Noel JK, Schug A, Verma A, Wenzel W, Garcia AE, Onuchic JN. Mirror images as naturally competing conformations in protein folding. The Journal of Physical Chemistry. B. 116: 6880-8. PMID 22497217 DOI: 10.1021/jp212623d  0.44
2011 Tian J, Garcia AE. Simulation studies of protein folding/unfolding equilibrium under polar and nonpolar confinement. Journal of the American Chemical Society. 133: 15157-64. PMID 21854029 DOI: 10.1021/ja2054572  1
2011 Jimenez-Cruz CA, Makhatadze GI, Garcia AE. Protonation/deprotonation effects on the stability of the Trp-cage miniprotein. Physical Chemistry Chemical Physics : Pccp. 13: 17056-63. PMID 21773639 DOI: 10.1039/c1cp21193e  0.44
2011 Rouget JB, Aksel T, Roche J, Saldana JL, Garcia AE, Barrick D, Royer CA. Size and sequence and the volume change of protein folding. Journal of the American Chemical Society. 133: 6020-7. PMID 21446709 DOI: 10.1021/ja200228w  0.44
2011 Joshi A, Kate S, Poon V, Mondal D, Boggara MB, Saraph A, Martin JT, McAlpine R, Day R, Garcia AE, Mogridge J, Kane RS. Structure-based design of a heptavalent anthrax toxin inhibitor. Biomacromolecules. 12: 791-6. PMID 21302959 DOI: 10.1021/bm101396u  0.44
2011 Sgourakis NG, Merced-Serrano M, Boutsidis C, Drineas P, Du Z, Wang C, Garcia AE. Atomic-level characterization of the ensemble of the Aβ(1-42) monomer in water using unbiased molecular dynamics simulations and spectral algorithms. Journal of Molecular Biology. 405: 570-83. PMID 21056574 DOI: 10.1016/j.jmb.2010.10.015  0.44
2010 Patel MM, Sgourakis NG, Garcia AE, Makhatadze GI. Experimental test of the thermodynamic model of protein cooperativity using temperature-induced unfolding of a Ubq-UIM fusion protein. Biochemistry. 49: 8455-67. PMID 20836541 DOI: 10.1021/bi101163u  0.44
2010 Zhuang W, Sgourakis NG, Li Z, Garcia AE, Mukamel S. Discriminating early stage A{beta}42 monomer structures using chirality-induced 2DIR spectroscopy in a simulation study. Proceedings of the National Academy of Sciences of the United States of America. 107: 15687-92. PMID 20798063 DOI: 10.1073/pnas.1002131107  0.44
2010 Sgourakis NG, Garcia AE. The membrane complex between transducin and dark-state rhodopsin exhibits large-amplitude interface dynamics on the sub-microsecond timescale: insights from all-atom MD simulations. Journal of Molecular Biology. 398: 161-73. PMID 20184892 DOI: 10.1016/j.jmb.2010.02.032  0.84
2010 Sgourakis NG, Patel MM, Garcia AE, Makhatadze GI, McCallum SA. Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain. Journal of Molecular Biology. 396: 1128-44. PMID 20053359 DOI: 10.1016/j.jmb.2009.12.052  0.44
2009 Tian J, Garcia AE. An alpha-helical peptide in AOT micelles prefers to be localized at the water/headgroup interface. Biophysical Journal. 96: L57-9. PMID 19450460 DOI: 10.1016/j.bpj.2009.03.014  1
2008 Sgourakis NG, Day R, McCallum SA, Garcia AE. Pressure effects on the ensemble dynamics of ubiquitin inspected with molecular dynamics simulations and isotropic reorientational eigenmode dynamics. Biophysical Journal. 95: 3943-55. PMID 18621814 DOI: 10.1529/biophysj.108.133702  0.44
2008 Garcia AE. Molecular dynamics simulations of protein folding. Methods in Molecular Biology (Clifton, N.J.). 413: 315-30. PMID 18075171  0.44
2007 Herce HD, Garcia AE. Cell penetrating peptides: how do they do it? Journal of Biological Physics. 33: 345-56. PMID 19669523 DOI: 10.1007/s10867-008-9074-3  0.44
2007 Herce HD, Garcia AE. Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes. Proceedings of the National Academy of Sciences of the United States of America. 104: 20805-10. PMID 18093956 DOI: 10.1073/pnas.0706574105  0.44
2007 Sgourakis NG, Yan Y, McCallum SA, Wang C, Garcia AE. The Alzheimer's peptides Abeta40 and 42 adopt distinct conformations in water: a combined MD / NMR study. Journal of Molecular Biology. 368: 1448-57. PMID 17397862 DOI: 10.1016/j.jmb.2007.02.093  0.44
2006 Herce HD, Garcia AE. Correction of apparent finite size effects in the area per lipid of lipid membranes simulations. The Journal of Chemical Physics. 125: 224711. PMID 17176158 DOI: 10.1063/1.2378893  0.44
2005 Garcia AE, Onuchic JN. Folding a protein in the computer: reality or hope? Structure (London, England : 1993). 13: 497-8. PMID 15837185 DOI: 10.1016/j.str.2005.03.005  0.44
2005 Nymeyer H, Woolf TB, Garcia AE. Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer. Proteins. 59: 783-90. PMID 15828005 DOI: 10.1002/prot.20460  0.44
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