David J Cutler - Publications

Affiliations: 
Emory University Medical School, Atlanta, GA, United States 
Area:
Population Genetics/Quantitative Genetics/Human Genetics

117 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Astore C, Sharma S, Nagpal S, Cutler DJ, Rioux JD, Cho JH, McGovern DPB, Brant SR, Kugathasan S, Jordan IK, Gibson G. The role of admixture in the rare variant contribution to inflammatory bowel disease. Genome Medicine. 15: 97. PMID 37968638 DOI: 10.1186/s13073-023-01244-w  0.388
2023 Curtis SW, Carlson JC, Beaty TH, Murray JC, Weinberg SM, Marazita ML, Cotney JL, Cutler DJ, Epstein MP, Leslie EJ. Rare variant modifier analysis identifies variants in SEC24D associated with orofacial cleft subtypes. Human Genetics. PMID 37676273 DOI: 10.1007/s00439-023-02596-4  0.312
2023 Curtis SW, Carlson JC, Beaty TH, Murray JC, Weinberg SM, Marazita ML, Cotney JL, Cutler DJ, Epstein MP, Leslie EJ. Rare genetic variants in modify orofacial cleft phenotypes. Medrxiv : the Preprint Server For Health Sciences. PMID 37034635 DOI: 10.1101/2023.03.24.23287714  0.303
2022 Sazonovs A, Stevens CR, Venkataraman GR, Yuan K, Avila B, Abreu MT, Ahmad T, Allez M, Ananthakrishnan AN, Atzmon G, Baras A, Barrett JC, Barzilai N, Beaugerie L, Beecham A, ... ... Cutler DJ, et al. Large-scale sequencing identifies multiple genes and rare variants associated with Crohn's disease susceptibility. Nature Genetics. PMID 36038634 DOI: 10.1038/s41588-022-01156-2  0.71
2022 Kozlova A, Zhang S, Kotlar AV, Jamison B, Zhang H, Shi S, Forrest MP, McDaid J, Cutler DJ, Epstein MP, Zwick ME, Pang ZP, Sanders AR, Warren ST, Gejman PV, et al. Loss of function of OTUD7A in the schizophrenia- associated 15q13.3 deletion impairs synapse development and function in human neurons. American Journal of Human Genetics. 109: 1500-1519. PMID 35931052 DOI: 10.1016/j.ajhg.2022.07.001  0.591
2022 Badshah N, Mattison KA, Ahmad S, Chopra P, Johnston HR, Ahmad S, Khan SH, Sarwar MT, Cutler DJ, Taylor M, Vadlamani G, Zwick ME, Escayg A. Novel Missense Variant Identified in Two Consanguineous Pakistani Families With Developmental Delay, Epilepsy, Intellectual Disability, and Aggressive Behavior. Frontiers in Neurology. 13: 918022. PMID 35911904 DOI: 10.3389/fneur.2022.918022  0.626
2022 Kong HE, Lim J, Linsalata A, Kang Y, Malik I, Allen EG, Cao Y, Shubeck L, Johnston R, Huang Y, Gu Y, Guo X, Zwick ME, Qin Z, Wingo TS, ... ... Cutler DJ, et al. Identification of as a genetic modifier of fragile X-associated tremor/ataxia syndrome. Proceedings of the National Academy of Sciences of the United States of America. 119: e2118124119. PMID 35617426 DOI: 10.1073/pnas.2118124119  0.616
2022 Jurickova I, Bonkowski E, Angerman E, Novak E, Huron A, Akers G, Iwasawa K, Braun T, Hadar R, Hooker M, Han S, Cutler DJ, Okou DT, Kugathasan S, Jegga A, et al. Eicosatetraynoic Acid and Butyrate Regulate Human Intestinal Organoid Mitochondrial and Extracellular Matrix Pathways Implicated in Crohn's Disease Strictures. Inflammatory Bowel Diseases. PMID 35259271 DOI: 10.1093/ibd/izac037  0.658
2022 Venkateswaran S, Somineni HK, Kilaru V, Katrinli S, Prince J, Okou DT, Hyams JS, Denson LA, Kellermayer R, Gibson G, Cutler DJ, Smith AK, Kugathasan S, Conneely KN. Methylation Quantitative Trait Loci are Largely Consistent across Disease States in Crohn's disease. G3 (Bethesda, Md.). PMID 35172000 DOI: 10.1093/g3journal/jkac041  0.721
2021 Trevino CE, Holleman AM, Corbitt H, Maslen CL, Rosser TC, Cutler DJ, Johnston HR, Rambo-Martin BL, Oberoi J, Dooley KJ, Capone GT, Reeves RH, Cordell HJ, Keavney BD, Agopian AJ, et al. Author Correction: Identifying genetic factors that contribute to the increased risk of congenital heart defects in infants with Down syndrome. Scientific Reports. 11: 15164. PMID 34285246 DOI: 10.1038/s41598-021-94021-x  0.567
2021 Mosley TJ, Johnston HR, Cutler DJ, Zwick ME, Mulle JG. Sex-specific recombination patterns predict parent of origin for recurrent genomic disorders. Bmc Medical Genomics. 14: 154. PMID 34107974 DOI: 10.1186/s12920-021-00999-8  0.614
2021 Somineni HK, Weitzner JH, Venkateswaran S, Dodd A, Prince J, Karikaran A, Sauer CG, Abramowicz S, Zwick ME, Cutler DJ, Okou DT, Chopra P, Kugathasan S. Site- and Taxa-Specific Disease-Associated Oral Microbial Structures Distinguish Inflammatory Bowel Diseases. Inflammatory Bowel Diseases. PMID 34002220 DOI: 10.1093/ibd/izab082  0.764
2021 Somineni HK, Nagpal S, Venkateswaran S, Cutler DJ, Okou DT, Haritunians T, Simpson CL, Begum F, Datta LW, Quiros AJ, Seminerio J, Mengesha E, Alexander JS, Baldassano RN, Dudley-Brown S, et al. Whole-genome sequencing of African Americans implicates differential genetic architecture in inflammatory bowel disease. American Journal of Human Genetics. PMID 33600772 DOI: 10.1016/j.ajhg.2021.02.001  0.808
2020 Trevino CE, Holleman AM, Corbitt H, Maslen CL, Rosser TC, Cutler DJ, Johnston HR, Rambo-Martin BL, Oberoi J, Dooley KJ, Capone GT, Reeves RH, Cordell HJ, Keavney BD, Agopian AJ, et al. Identifying genetic factors that contribute to the increased risk of congenital heart defects in infants with Down syndrome. Scientific Reports. 10: 18051. PMID 33093519 DOI: 10.1038/s41598-020-74650-4  0.651
2020 Bishop MR, Diaz Perez KK, Sun M, Ho S, Chopra P, Mukhopadhyay N, Hetmanski JB, Taub MA, Moreno-Uribe LM, Valencia-Ramirez LC, Restrepo Muñeton CP, Wehby G, Hecht JT, Deleyiannis F, Weinberg SM, ... ... Cutler DJ, et al. Genome-wide Enrichment of De Novo Coding Mutations in Orofacial Cleft Trios. American Journal of Human Genetics. PMID 32574564 DOI: 10.1016/J.Ajhg.2020.05.018  0.385
2020 Cleynen I, Engchuan W, Hestand MS, Heung T, Holleman AM, Johnston HR, Monfeuga T, McDonald-McGinn DM, Gur RE, Morrow BE, Swillen A, Vorstman JAS, Bearden CE, Chow EWC, van den Bree M, ... ... Cutler DJ, et al. Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion. Molecular Psychiatry. PMID 32015465 DOI: 10.1038/S41380-020-0654-3  0.602
2020 Satterstrom FK, Kosmicki JA, Wang J, Breen MS, De Rubeis S, An JY, Peng M, Collins R, Grove J, Klei L, Stevens C, Reichert J, Mulhern MS, Artomov M, Gerges S, ... ... Cutler DJ, et al. Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism. Cell. PMID 31981491 DOI: 10.1016/J.Cell.2019.12.036  0.636
2020 Venkateswaran S, Somineni HK, Matthews J, Kilaru V, Denson LA, Hyams JS, Investigators P, Cutler DJ, Smith AK, Conneely KN, Kugathasan S. 614 RECTAL TISSUE DNA METHYLATION IN ULCERATIVE COLITIS SHOWS DISEASE-SPECIFIC ASSOCIATIONS: INSIGHTS FROM LONGITUDINAL ANALYSIS OF PROTECT STUDY PARTICIPANTS Gastroenterology. 158: S-131. DOI: 10.1016/S0016-5085(20)31007-6  0.307
2020 Niklinska-Schirtz BJ, Matthews J, Venkateswaran S, Prince J, Dodd A, Cutler DJ, Kugathasan S. 589 Pediatric Crohn'S Disease Patient Derived Organoids Show Persistent Transcriptomic Epithelial Cell Defects Gastroenterology. 158. DOI: 10.1016/S0016-5085(20)30995-1  0.33
2019 Solis-Lemus CR, Fischer ST, Todor A, Liu C, Leslie EJ, Cutler DJ, Ghosh D, Epstein MP. Leveraging Family History in Case-Control Analyses of Rare Variation. Genetics. PMID 31843756 DOI: 10.1534/Genetics.119.302846  0.323
2019 Venkateswaran S, Denson LA, Jurickova I, Dodd A, Zwick ME, Cutler DJ, Kugathasan S, Okou DT. Neutrophil GM-CSF signaling in inflammatory bowel disease patients is influenced by non-coding genetic variants. Scientific Reports. 9: 9168. PMID 31235766 DOI: 10.1038/S41598-019-45701-2  0.787
2019 Doan RN, Lim ET, De Rubeis S, Betancur C, Cutler DJ, Chiocchetti AG, Overman LM, Soucy A, Goetze S, Freitag CM, Daly MJ, Walsh CA, Buxbaum JD, Yu TW. Recessive gene disruptions in autism spectrum disorder. Nature Genetics. PMID 31209396 DOI: 10.1038/S41588-019-0433-8  0.352
2019 Wingo TS, Cutler DJ, Wingo AP, Le NA, Rabinovici GD, Miller BL, Lah JJ, Levey AI. Association of Early-Onset Alzheimer Disease With Elevated Low-density Lipoprotein Cholesterol Levels and Rare Genetic Coding Variants of APOB. Jama Neurology. PMID 31135820 DOI: 10.1001/Jamaneurol.2019.0648  0.313
2019 Somineni HK, Venkateswaran S, Kilaru V, Marigorta UM, Mo A, Okou DT, Kellermayer R, Mondal K, Cobb D, Walters TD, Griffiths A, Noe JD, Crandall WV, Rosh JR, Mack DR, ... ... Cutler DJ, et al. Blood-derived DNA Methylation Signatures of Crohn's Disease and Severity of Intestinal Inflammation. Gastroenterology. PMID 30779925 DOI: 10.1053/J.Gastro.2019.01.270  0.704
2019 Berauer JP, Mezina AI, Okou DT, Sabo A, Muzny DM, Gibbs RA, Hegde MR, Chopra P, Cutler DJ, Perlmutter DH, Bull LN, Thompson RJ, Loomes KM, Spinner NB, Rajagopalan R, et al. Identification of PKD1L1 Gene Variants in Children with the Biliary Atresia Splenic Malformation Syndrome. Hepatology (Baltimore, Md.). PMID 30664273 DOI: 10.1002/Hep.30515  0.696
2019 Venkateswaran S, Somineni HK, Kilaru V, Hyams JS, Denson LA, Cutler DJ, Smith AK, Conneely KN, Kugathasan S. Tu1159 – Blood Mqtl Effects are Consistent During the Course of the Disease Regardless of Remission Or Relapse Status in Pediatric Crohn’s Disease Patients Gastroenterology. 156: S-967. DOI: 10.1016/S0016-5085(19)39373-4  0.33
2019 Somineni HK, Haritunians T, Simpson CL, Cutler DJ, Okou D, Itan Y, Venkateswaran S, Stevens C, Datta LW, Dhere TA, Lazarev M, Consortium EAAI, Zwick ME, Cho JH, Daly MJ, et al. Su1028 – Whole-Genome Sequencing of African Americans Identifies Novel Rare Variants Associated with Inflammatory Bowel Disease Gastroenterology. 156: S-488-S-489. DOI: 10.1016/S0016-5085(19)38082-5  0.801
2019 Satterstrom F, Kosmicki J, Wang J, Collins R, de Rubeis S, Breen M, Gerges S, Børglum A, Buxbaum J, Cutler D, Devlin B, Roeder K, Sanders S, Talkowski M, Daly M. 31DISCOVERY AND CHARACTERIZATION OF 102 GENES ASSOCIATED WITH AUTISM FROM EXOME SEQUENCING OF 37,269 INDIVIDUALS European Neuropsychopharmacology. 29: S1083-S1084. DOI: 10.1016/J.Euroneuro.2018.08.038  0.342
2018 Denson LA, Jurickova I, Karns R, Shaw KA, Cutler DJ, Okou D, Alexander Valencia C, Dodd A, Mondal K, Aronow BJ, Haberman Y, Linn A, Price A, Bezold R, Lake K, et al. Genetic and Transcriptomic Variation Linked to Neutrophil Granulocyte-Macrophage Colony-Stimulating Factor Signaling in Pediatric Crohn's Disease. Inflammatory Bowel Diseases. PMID 30124884 DOI: 10.1093/Ibd/Izy265  0.781
2018 Shaw KA, Cutler DJ, Okou D, Dodd A, Aronow BJ, Haberman Y, Stevens C, Walters TD, Griffiths A, Baldassano RN, Noe JD, Hyams JS, Crandall WV, Kirschner BS, Heyman MB, et al. Genetic variants and pathways implicated in a pediatric inflammatory bowel disease cohort. Genes and Immunity. PMID 29593342 DOI: 10.1038/S41435-018-0015-2  0.816
2018 Venkateswaran S, Prince J, Cutler DJ, Marigorta UM, Okou DT, Prahalad S, Mack D, Boyle B, Walters T, Griffiths A, Sauer CG, LeLeiko N, Keljo D, Markowitz J, Baker SS, et al. Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis. Inflammatory Bowel Diseases. 24: 829-838. PMID 29562276 DOI: 10.1093/Ibd/Izx084  0.801
2018 Denson LA, Jurickova I, Karns R, Shaw KA, Cutler DJ, Okou D, Dodd A, Quinn K, Mondal K, Aronow BJ, Haberman Y, Linn A, Price A, Bezold R, Lake K, et al. Clinical and Genomic Correlates of Neutrophil Reactive Oxygen Species Production in Pediatric Patients with Crohn's Disease. Gastroenterology. PMID 29454792 DOI: 10.1053/J.Gastro.2018.02.016  0.785
2018 Kotlar AV, Trevino CE, Zwick ME, Cutler DJ, Wingo TS. Bystro: rapid online variant annotation and natural-language filtering at whole-genome scale. Genome Biology. 19: 14. PMID 29409527 DOI: 10.1186/S13059-018-1387-3  0.607
2018 Somineni HK, Venkateswaran S, Kilaru V, Chopra P, Okou DT, Hyams JS, Denson LA, Cutler DJ, Gibson G, Conneely KN, Smith AK, Kugathasan S. 10 EPIGENOME-WIDE ASSOCIATION STUDY IDENTIFIED SHARED METHYLOMIC CONTRIBUTIONS TO SUSCEPTIBILITY AND PROGRESSION IN PEDIATRIC CROHN’S DISEASE Inflammatory Bowel Diseases. 24: S71-S71. DOI: 10.1093/ibd/izy038.017  0.705
2018 Somineni HK, Venkateswaran S, Kilaru V, Chopra P, Okou DT, Hyams JS, Denson LA, Cutler DJ, Gibson G, Conneely KN, Smith AK, Kugathasan S. 10 EPIGENOME-WIDE ASSOCIATION STUDY IDENTIFIED SHARED METHYLOMIC CONTRIBUTIONS TO SUSCEPTIBILITY AND PROGRESSION IN PEDIATRIC CROHN'S DISEASE Gastroenterology. 154: S101. DOI: 10.1053/J.Gastro.2017.11.238  0.725
2018 Denson LA, Jurickova I, Karns R, Shaw KA, Cutler DJ, Okou D, Dodd A, Mondal K, Aronow BJ, Haberman Y, Linn A, Price A, Bezold R, Lake K, Jackson K, et al. 27 CLINICAL AND GENOMIC CORRELATES OF NEUTROPHIL GRANULOCYTE-MACROPHAGE COLONY STIMULATING FACTOR SIGNALING IN PEDIATRIC CROHN DISEASE Inflammatory Bowel Diseases. 24: S7-S8. DOI: 10.1053/J.Gastro.2017.11.051  0.773
2018 Jurickova I, Karns R, Cutler DJ, Okou D, Dodd A, Mondal K, Aronow BJ, Haberman Y, Linn A, Price A, Bezold R, Lake K, Jackson K, Walters TD, Griffiths AM, et al. 378 - Genomic Correlates of Reduced Neutrophil Granulocytemacrophage Colony Stimulating Factor Signaling in Stricturing Pediatric Crohn Disease Gastroenterology. 154: S-89-S-90. DOI: 10.1016/S0016-5085(18)30746-7  0.778
2017 Rambo-Martin BL, Mulle JG, Cutler DJ, Bean LJH, Rosser TC, Dooley KJ, Cua C, Capone G, Maslen CL, Reeves RH, Sherman SL, Zwick ME. Analysis of Copy Number Variants on Chromosome 21 in Down Syndrome-Associated Congenital Heart Defects. G3 (Bethesda, Md.). PMID 29141989 DOI: 10.1534/G3.117.300366  0.64
2017 Guo T, Repetto GM, McDonald McGinn DM, Chung JH, Nomaru H, Campbell CL, Blonska A, Bassett AS, Chow EWC, Mlynarski EE, Swillen A, Vermeesch J, Devriendt K, Gothelf D, Carmel M, ... ... Cutler DJ, et al. Genome-Wide Association Study to Find Modifiers for Tetralogy of Fallot in the 22q11.2 Deletion Syndrome Identifies Variants in the GPR98 Locus on 5q14.3. Circulation. Cardiovascular Genetics. 10. PMID 29025761 DOI: 10.1161/Circgenetics.116.001690  0.311
2017 Johnston HR, Chopra P, Wingo TS, Patel V, Epstein MP, Mulle JG, Warren ST, Zwick ME, Cutler DJ. Reply to Plüss et al.: The strength of PEMapper/PECaller lies in unbiased calling using large sample sizes. Proceedings of the National Academy of Sciences of the United States of America. PMID 28916730 DOI: 10.1073/Pnas.1714535114  0.611
2017 Wingo TS, Duong DM, Zhou M, Dammer EB, Wu H, Cutler DJ, Lah JJ, Levey AI, Seyfried NT. Integrating Next-Generation Genomic Sequencing and Mass Spectrometry to Estimate Allele-Specific Protein Abundance in Human Brain. Journal of Proteome Research. PMID 28691493 DOI: 10.1021/Acs.Jproteome.7B00324  0.323
2017 Johnston HR, Chopra P, Wingo TS, Patel V, Epstein MP, Mulle JG, Warren ST, Zwick ME, Cutler DJ. PEMapper and PECaller provide a simplified approach to whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. PMID 28223510 DOI: 10.1073/Pnas.1618065114  0.629
2017 Kosmicki JA, Samocha KE, Howrigan DP, Sanders SJ, Slowikowski K, Lek M, Karczewski KJ, Cutler DJ, Devlin B, Roeder K, Buxbaum JD, Neale BM, MacArthur DG, Wall DP, Robinson EB, et al. Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples. Nature Genetics. PMID 28191890 DOI: 10.1038/Ng.3789  0.385
2017 Wingo TS, Kotlar A, Cutler DJ. MPD: multiplex primer design for next-generation targeted sequencing. Bmc Bioinformatics. 18: 14. PMID 28056760 DOI: 10.1186/S12859-016-1453-3  0.349
2017 Denson LA, Jurickova I, Shaw K, Linn A, Dodd A, Okou D, Chalk C, Bonkowski E, Griffiths AM, Baldassano RN, Noe JD, Hyams JS, Crandall WV, Heyman MB, Snapper SB, ... ... Cutler DJ, et al. Low Neutrophil Reactive Oxygen Species Production is Associated with Nicotinamide-Adenine Dinucleotide Phosphate (NADPH) Oxidase Gene Mutations and Refractory Colonic Involvement in Pediatric Crohn Disease Gastroenterology. 152: S955. DOI: 10.1016/S0016-5085(17)33247-X  0.76
2017 Denson LA, Jurickova I, Shaw K, Linn A, Dodd A, Okou D, Chalk C, Bonkowski E, Griffiths AM, Baldassano RN, Noe JD, Hyams JS, Crandall WV, Heyman MB, Snapper SB, ... ... Cutler DJ, et al. Reduced Neutrophil Granulocyte-Macrophage Colony Stimulating Factor Signaling is Associated with Granulocyte-Macrophage Colony Stimulating Factor Receptor Alpha Chain Gene Mutations and Stricturing Disease Complications in Pediatric Crohn Disease Gastroenterology. 152: S955. DOI: 10.1016/S0016-5085(17)33246-8  0.764
2017 Prince J, Venkateswaran S, Cutler DJ, Okou D, Chopra P, Davis S, Baker SS, Strople JA, Hommel KA, Evans JS, Sauer CG, Markowitz J, Rufo PA, Pfefferkorn MD, Ziring D, et al. Greater Contribution of HLA to Risk for Pediatric-Onset Ulcerative Colitis Can be Narrowed to 3 Independent Classic HLA Variants and Corresponding Amino Acid Changes Gastroenterology. 152: S954. DOI: 10.1016/S0016-5085(17)33244-4  0.679
2016 Brant SR, Okou DT, Simpson CL, Cutler DJ, Haritunians T, Bradfield JP, Chopra P, Prince J, Begum F, Kumar A, Huang C, Venkateswaran S, Datta LW, Wei Z, Thomas K, et al. Genome-wide Association Study Identifies African-Specific Susceptibility Loci in African Americans with Inflammatory Bowel Disease. Gastroenterology. PMID 27693347 DOI: 10.1053/J.Gastro.2016.09.032  0.801
2016 Broadaway KA, Cutler DJ, Duncan R, Moore JL, Ware EB, Jhun MA, Bielak LF, Zhao W, Smith JA, Peyser PA, Kardia SL, Ghosh D, Epstein MP. A Statistical Approach for Testing Cross-Phenotype Effects of Rare Variants. American Journal of Human Genetics. 98: 525-540. PMID 26942286 DOI: 10.1016/J.Ajhg.2016.01.017  0.366
2015 Huang C, Haritunians T, Okou DT, Cutler DJ, Zwick ME, Taylor KD, Datta LW, Maranville JC, Liu Z, Ellis S, Chopra P, Alexander JS, Baldassano RN, Cross RK, Dassopoulos T, et al. Characterization of Genetic Loci That Affect Susceptibility to Inflammatory Bowel Diseases in African Americans. Gastroenterology. PMID 26278503 DOI: 10.1053/J.Gastro.2015.07.065  0.797
2015 Ramachandran D, Zeng Z, Locke AE, Mulle JG, Bean LJ, Rosser TC, Dooley KJ, Cua CL, Capone GT, Reeves RH, Maslen CL, Cutler DJ, Feingold E, Sherman SL, Zwick ME. Genome-Wide Association Study of Down Syndrome-Associated Atrioventricular Septal Defects. G3 (Bethesda, Md.). 5: 1961-71. PMID 26194203 DOI: 10.1534/G3.115.019943  0.661
2015 Cutler DJ, Zwick ME, Okou DT, Prahalad S, Walters T, Guthery SL, Dubinsky M, Baldassano R, Crandall WV, Rosh J, Markowitz J, Stephens M, Kellermayer R, Pfefferkorn M, Heyman MB, et al. Dissecting Allele Architecture of Early Onset IBD Using High-Density Genotyping. Plos One. 10: e0128074. PMID 26098103 DOI: 10.1371/Journal.Pone.0128074  0.803
2015 Tran TT, Liu Y, Zwick ME, Ramachandran D, Cutler DJ, Huang X, Berry GT, Fridovich-Keil JL. A De Novo Variant in Galactose-1-P Uridylyltransferase (GALT) Leading to Classic Galactosemia. Jimd Reports. 19: 1-6. PMID 25681079 DOI: 10.1007/8904_2014_349  0.589
2015 Johnston HR, Hu Y, Cutler DJ. Population genetics identifies challenges in analyzing rare variants. Genetic Epidemiology. 39: 145-8. PMID 25640419 DOI: 10.1002/Gepi.21881  0.381
2015 Ramachandran D, Mulle JG, Locke AE, Bean LJ, Rosser TC, Bose P, Dooley KJ, Cua CL, Capone GT, Reeves RH, Maslen CL, Cutler DJ, Sherman SL, Zwick ME. Contribution of copy-number variation to Down syndrome-associated atrioventricular septal defects. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 17: 554-60. PMID 25341113 DOI: 10.1038/Gim.2014.144  0.623
2015 Brant SR, Huang C, Haritunians T, Okou DT, Cutler DJ, Zwick ME, Datta LW, Taylor KD, Rotter JI, Bridges S, Kimberly RP, Rich SS, McGovern D, Kugathasan S. 387 Immunochip Implicates Multiple Genetic Loci for African American IBD Including HLA-DRB1*1502 for UC, NOD2, PTGER4, IL23R, LZKF3 and STAT5A/STAT3 for CD and Several Regions of Significant Admixture Linkage Disequilibrium Gastroenterology. 148: S-80. DOI: 10.1016/S0016-5085(15)30281-X  0.779
2014 De Rubeis S, He X, Goldberg AP, Poultney CS, Samocha K, Cicek AE, Kou Y, Liu L, Fromer M, Walker S, Singh T, Klei L, Kosmicki J, Shih-Chen F, Aleksic B, ... ... Cutler DJ, et al. Synaptic, transcriptional and chromatin genes disrupted in autism. Nature. 515: 209-15. PMID 25363760 DOI: 10.1038/Nature13772  0.613
2014 Okou DT, Mondal K, Faubion WA, Kobrynski LJ, Denson LA, Mulle JG, Ramachandran D, Xiong Y, Svingen P, Patel V, Bose P, Waters JP, Prahalad S, Cutler DJ, Zwick ME, et al. Exome sequencing identifies a novel FOXP3 mutation in a 2-generation family with inflammatory bowel disease. Journal of Pediatric Gastroenterology and Nutrition. 58: 561-8. PMID 24792626 DOI: 10.1097/Mpg.0000000000000302  0.795
2014 Mulle JG, Pulver AE, McGrath JA, Wolyniec PS, Dodd AF, Cutler DJ, Sebat J, Malhotra D, Nestadt G, Conrad DF, Hurles M, Barnes CP, Ikeda M, Iwata N, Levinson DF, et al. Reciprocal duplication of the Williams-Beuren syndrome deletion on chromosome 7q11.23 is associated with schizophrenia. Biological Psychiatry. 75: 371-7. PMID 23871472 DOI: 10.1016/J.Biopsych.2013.05.040  0.334
2014 Prahalad S, Marion MC, Cobb J, Sudman M, Hinks A, Pichavant M, Ponder L, Reed AM, Wallace C, Becker ML, Yeung RSM, Rosenberg AM, Punaro MG, Mellins ED, Nelson JL, ... ... Cutler D, et al. A159: The Autoimmune Genetic Architecture of Childhood Onset Rheumatoid Arthritis Arthritis & Rheumatology. 66: S205-S206. DOI: 10.1002/Art.38585  0.382
2013 Johnston HR, Cutler DJ. A comprehensive search for recombinogenic motifs in the human genome. Plos One. 8: e62920. PMID 23626862 DOI: 10.1371/Journal.Pone.0062920  0.307
2013 Prahalad S, Conneely KN, Jiang Y, Sudman M, Wallace CA, Brown MR, Ponder LA, Rohani-Pichavant M, Zwick ME, Cutler DJ, Angeles-Han ST, Vogler LB, Kennedy C, Rouster-Stevens K, Wise CA, et al. Susceptibility to childhood-onset rheumatoid arthritis: investigation of a weighted genetic risk score that integrates cumulative effects of variants at five genetic loci. Arthritis and Rheumatism. 65: 1663-7. PMID 23450725 DOI: 10.1002/Art.37913  0.617
2013 Kugathasan S, Okou DT, Mondal K, Benjamin AL, Kumar A, Hussain SZ, Katz J, Cross R, Moulton DE, Cutler DJ, Zwick ME. Su1743 Exome Sequencing Identify Novel Variants in African-Americans With Severe Perianal and Colonic Crohn's Disease Gastroenterology. 144: S-465. DOI: 10.1016/S0016-5085(13)61720-5  0.753
2013 Kugathasan S, Dubinsky M, Guthery SL, Okou DT, Bose P, Zwick ME, Cutler DJ, Waters JP, Hyams JS, Baldassano R, Stephens MC, Heyman MB, Griffiths AM, Crandall W, Markowitz J, et al. 976 Early Onset Crohn's Disease Exhibit Distinct Allele Architecture Differences and Reveal New IBD Loci Gastroenterology. 144: S-178. DOI: 10.1016/S0016-5085(13)60634-4  0.783
2012 Steinberg KM, Ramachandran D, Patel VC, Shetty AC, Cutler DJ, Zwick ME. Identification of rare X-linked neuroligin variants by massively parallel sequencing in males with autism spectrum disorder. Molecular Autism. 3: 8. PMID 23020841 DOI: 10.1186/2040-2392-3-8  0.69
2012 Mondal K, Ramachandran D, Patel VC, Hagen KR, Bose P, Cutler DJ, Zwick ME. Excess variants in AFF2 detected by massively parallel sequencing of males with autism spectrum disorder. Human Molecular Genetics. 21: 4356-64. PMID 22773736 DOI: 10.1093/Hmg/Dds267  0.637
2012 Johnston HR, Cutler DJ. Population demographic history can cause the appearance of recombination hotspots. American Journal of Human Genetics. 90: 774-83. PMID 22560089 DOI: 10.1016/J.Ajhg.2012.03.011  0.314
2012 Adeyanju O, Okou DT, Huang C, Kumar A, Sauer C, Galloway C, Prasad M, Waters J, Cutler DJ, Zwick ME, Dhere T, Kugathasan S. Common NOD2 risk variants in African Americans with Crohn's disease are due exclusively to recent Caucasian admixture. Inflammatory Bowel Diseases. 18: 2357-9. PMID 22447396 DOI: 10.1002/Ibd.22944  0.791
2012 Sun M, Mondal K, Patel V, Horner VL, Long AB, Cutler DJ, Caspary T, Zwick ME. Multiplex Chromosomal Exome Sequencing Accelerates Identification of ENU-Induced Mutations in the Mouse. G3 (Bethesda, Md.). 2: 143-50. PMID 22384391 DOI: 10.1534/G3.111.001669  0.638
2012 Judy JT, Seifuddin F, Mahon PB, Huo Y, Goes FS, Jancic D, Schweizer B, Mondimore FM, Mackinnon DF, Depaulo JR, Gershon ES, McMahon FJ, Cutler DJ, Zandi PP, Potash JB, et al. Association study of serotonin pathway genes in attempted suicide. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 159: 112-9. PMID 22170779 DOI: 10.1002/Ajmg.B.32008  0.348
2012 Wingo TS, Lah JJ, Levey AI, Cutler DJ. Autosomal recessive causes likely in early-onset Alzheimer disease. Archives of Neurology. 69: 59-64. PMID 21911656 DOI: 10.1001/Archneurol.2011.221  0.315
2012 Prahalad S, Brown M, Thompson SD, Zwick M, Cutler D, Ponder LA, Prozonic J, Angeles-Han S, Vogler LB, Kennedy CW, Wallace CA, Wise C, Punaro MG, Reed AM, Park JL, et al. Susceptibility to childhood onset rheumatoid arthritis: investigation of a weighted genetic risk score that integrates cumulative effects of five genetic risk variants Pediatric Rheumatology. 10. DOI: 10.1186/1546-0096-10-S1-A116  0.627
2011 Wingo TS, Cutler DJ, Yarab N, Kelly CM, Glass JD. The heritability of amyotrophic lateral sclerosis in a clinically ascertained United States research registry. Plos One. 6: e27985. PMID 22132186 DOI: 10.1371/Journal.Pone.0027985  0.309
2011 Wright FA, Strug LJ, Doshi VK, Commander CW, Blackman SM, Sun L, Berthiaume Y, Cutler D, Cojocaru A, Collaco JM, Corey M, Dorfman R, Goddard K, Green D, Kent JW, et al. Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2. Nature Genetics. 43: 539-46. PMID 21602797 DOI: 10.1038/Ng.838  0.376
2011 Mondal K, Shetty AC, Patel V, Cutler DJ, Zwick ME. Targeted sequencing of the human X chromosome exome. Genomics. 98: 260-5. PMID 21524701 DOI: 10.1016/J.Ygeno.2011.04.004  0.617
2011 Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Nucleic Acids Research. 39: 44-58. PMID 20843780 DOI: 10.1093/Nar/Gkq750  0.36
2011 Adeyanju O, Okou D, Huang C, Sauer C, Prasad M, Waters J, Ifeadike W, Benjamin A, Labaze S, Cutler D, Zwick M, Dhere T, Kugathasan S. Risk of NOD2 in African-American subjects with Crohnʼs disease is exclusively contributed by Caucasian admixture Inflammatory Bowel Diseases. 17: S77-S78. DOI: 10.1097/00054725-201112002-00255  0.759
2011 Wingo T, Levey A, Lah J, Cutler D. Early-onset Alzheimer's disease likely has autosomal recessive causes Alzheimers & Dementia. 7. DOI: 10.1016/J.Jalz.2011.09.088  0.333
2010 Patel VC, Mondal K, Shetty AC, Horner VL, Bedoyan JK, Martin D, Caspary T, Cutler DJ, Zwick ME. Microarray oligonucleotide probe designer (MOPeD): A web service. Open Access Bioinformatics. 2: 145-155. PMID 21379402 DOI: 10.2147/OAB.S13741  0.617
2010 Cutler DJ, Jensen JD. To pool, or not to pool? Genetics. 186: 41-3. PMID 20855575 DOI: 10.1534/Genetics.110.121012  0.374
2010 Shetty AC, Athri P, Mondal K, Horner VL, Steinberg KM, Patel V, Caspary T, Cutler DJ, Zwick ME. SeqAnt: a web service to rapidly identify and annotate DNA sequence variations. Bmc Bioinformatics. 11: 471. PMID 20854673 DOI: 10.1186/1471-2105-11-471  0.644
2010 Collins SC, Bray SM, Suhl JA, Cutler DJ, Coffee B, Zwick ME, Warren ST. Identification of novel FMR1 variants by massively parallel sequencing in developmentally delayed males. American Journal of Medical Genetics. Part A. 152: 2512-20. PMID 20799337 DOI: 10.1002/Ajmg.A.33626  0.647
2010 Mulle JG, Dodd AF, McGrath JA, Wolyniec PS, Mitchell AA, Shetty AC, Sobreira NL, Valle D, Rudd MK, Satten G, Cutler DJ, Pulver AE, Warren ST. Microdeletions of 3q29 confer high risk for schizophrenia. American Journal of Human Genetics. 87: 229-36. PMID 20691406 DOI: 10.1016/J.Ajhg.2010.07.013  0.38
2010 Mulle JG, Patel VC, Warren ST, Hegde MR, Cutler DJ, Zwick ME. Empirical evaluation of oligonucleotide probe selection for DNA microarrays. Plos One. 5: e9921. PMID 20360966 DOI: 10.1371/Journal.Pone.0009921  0.593
2010 Collins SC, Coffee B, Benke PJ, Berry-Kravis E, Gilbert F, Oostra B, Halley D, Zwick ME, Cutler DJ, Warren ST. Array-based FMR1 sequencing and deletion analysis in patients with a fragile X syndrome-like phenotype. Plos One. 5: e9476. PMID 20221430 DOI: 10.1371/Journal.Pone.0009476  0.616
2010 Cutler DJ, Abecasis GR. Response to Graffelman: Tests of Hardy-Weinberg Equilibrium American Journal of Human Genetics. 86: 818-819. DOI: 10.1016/J.Ajhg.2010.03.012  0.326
2009 McDougal KE, Fallin MD, Moller DR, Song Z, Cutler DJ, Steiner LL, Cutting GR. Variation in the lymphotoxin-alpha/tumor necrosis factor locus modifies risk of erythema nodosum in sarcoidosis. The Journal of Investigative Dermatology. 129: 1921-6. PMID 19225544 DOI: 10.1038/Jid.2008.456  0.378
2009 Carney AE, Sanders RD, Garza KR, McGaha LA, Bean LJ, Coffee BW, Thomas JW, Cutler DJ, Kurtkaya NL, Fridovich-Keil JL. Origins, distribution and expression of the Duarte-2 (D2) allele of galactose-1-phosphate uridylyltransferase. Human Molecular Genetics. 18: 1624-32. PMID 19224951 DOI: 10.1093/Hmg/Ddp080  0.327
2009 Willour VL, Chen H, Toolan J, Belmonte P, Cutler DJ, Goes FS, Zandi PP, Lee RS, MacKinnon DF, Mondimore FM, Schweizer B, DePaulo JR, Gershon ES, et al. Family-based association of FKBP5 in bipolar disorder. Molecular Psychiatry. 14: 261-8. PMID 18180755 DOI: 10.1038/Sj.Mp.4002141  0.361
2008 Bremer LA, Blackman SM, Vanscoy LL, McDougal KE, Bowers A, Naughton KM, Cutler DJ, Cutting GR. Interaction between a novel TGFB1 haplotype and CFTR genotype is associated with improved lung function in cystic fibrosis. Human Molecular Genetics. 17: 2228-37. PMID 18424453 DOI: 10.1093/Hmg/Ddn123  0.326
2008 Lin S, Carvalho B, Cutler DJ, Arking DE, Chakravarti A, Irizarry RA. Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biology. 9: R63. PMID 18387188 DOI: 10.1186/Gb-2008-9-4-R63  0.455
2008 Arking DE, Cutler DJ, Brune CW, Teslovich TM, West K, Ikeda M, Rea A, Guy M, Lin S, Cook EH, Chakravarti A. A common genetic variant in the neurexin superfamily member CNTNAP2 increases familial risk of autism. American Journal of Human Genetics. 82: 160-4. PMID 18179894 DOI: 10.1016/J.Ajhg.2007.09.015  0.56
2007 Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, Frazer KA, Ballinger DG, ... ... Cutler DJ, et al. Genome-wide detection and characterization of positive selection in human populations. Nature. 449: 913-8. PMID 17943131 DOI: 10.1038/Nature06250  0.53
2007 Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, ... ... Cutler DJ, et al. A second generation human haplotype map of over 3.1 million SNPs. Nature. 449: 851-61. PMID 17943122 DOI: 10.1038/Nature06258  0.531
2007 Okou DT, Steinberg KM, Middle C, Cutler DJ, Albert TJ, Zwick ME. Microarray-based genomic selection for high-throughput resequencing. Nature Methods. 4: 907-9. PMID 17934469 DOI: 10.1038/Nmeth1109  0.766
2007 Kohler JR, Cutler DJ. Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies. American Journal of Human Genetics. 81: 684-99. PMID 17846995 DOI: 10.1086/520823  0.383
2007 Gherman A, Chen PE, Teslovich TM, Stankiewicz P, Withers M, Kashuk CS, Chakravarti A, Lupski JR, Cutler DJ, Katsanis N. Population bottlenecks as a potential major shaping force of human genome architecture. Plos Genetics. 3: e119. PMID 17658953 DOI: 10.1371/Journal.Pgen.0030119  0.516
2007 Verma R, Cutler DJ, Holmans P, Knowles JA, Crowe RR, Scheftner WA, Weissman MM, DePaulo JR, Levinson DF, Potash JB. Investigating the role of p11 (S100A10) sequence variation in susceptibility to major depression. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 144: 1079-82. PMID 17510952 DOI: 10.1002/Ajmg.B.30514  0.338
2006 Blackman SM, Deering-Brose R, McWilliams R, Naughton K, Coleman B, Lai T, Algire M, Beck S, Hoover-Fong J, Hamosh A, Fallin MD, West K, Arking DE, Chakravarti A, Cutler DJ, et al. Relative contribution of genetic and nongenetic modifiers to intestinal obstruction in cystic fibrosis. Gastroenterology. 131: 1030-9. PMID 17030173 DOI: 10.1053/J.Gastro.2006.07.016  0.472
2006 Zhou S, Kassauei K, Cutler DJ, Kennedy GC, Sidransky D, Maitra A, Califano J. An oligonucleotide microarray for high-throughput sequencing of the mitochondrial genome. The Journal of Molecular Diagnostics : Jmd. 8: 476-82. PMID 16931588 DOI: 10.2353/Jmoldx.2006.060008  0.332
2005 Maitra A, Arking DE, Shivapurkar N, Ikeda M, Stastny V, Kassauei K, Sui G, Cutler DJ, Liu Y, Brimble SN, Noaksson K, Hyllner J, Schulz TC, Zeng X, Freed WJ, et al. Genomic alterations in cultured human embryonic stem cells. Nature Genetics. 37: 1099-103. PMID 16142235 DOI: 10.1038/Ng1631  0.499
2005 Mitchell AA, Chakravarti A, Cutler DJ. On the probability that a novel variant is a disease-causing mutation. Genome Research. 15: 960-6. PMID 15965029 DOI: 10.1101/Gr.3761405  0.542
2005 Emison ES, McCallion AS, Kashuk CS, Bush RT, Grice E, Lin S, Portnoy ME, Cutler DJ, Green ED, Chakravarti A. A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk. Nature. 434: 857-63. PMID 15829955 DOI: 10.1038/Nature03467  0.586
2005 Wigginton JE, Cutler DJ, Abecasis GR. A note on exact tests of Hardy-Weinberg equilibrium. American Journal of Human Genetics. 76: 887-93. PMID 15789306 DOI: 10.1086/429864  0.306
2005 Zwick ME, Mcafee F, Cutler DJ, Read TD, Ravel J, Bowman GR, Galloway DR, Mateczun A. Microarray-based resequencing of multiple Bacillus anthracis isolates. Genome Biology. 6: R10. PMID 15642093 DOI: 10.1186/Gb-2004-6-1-R10  0.633
2004 Lin S, Chakravarti A, Cutler DJ. Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies. Nature Genetics. 36: 1181-8. PMID 15502828 DOI: 10.1038/Ng1457  0.582
2004 Lin S, Chakravarti A, Cutler DJ. Haplotype and missing data inference in nuclear families. Genome Research. 14: 1624-32. PMID 15256514 DOI: 10.1101/Gr.2204604  0.497
2004 Wong CW, Albert TJ, Vega VB, Norton JE, Cutler DJ, Richmond TA, Stanton LW, Liu ET, Miller LD. Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays. Genome Research. 14: 398-405. PMID 14993206 DOI: 10.1101/Gr.2141004  0.363
2004 Mitchell AA, Zwick ME, Chakravarti A, Cutler DJ. Discrepancies in dbSNP confirmation rates and allele frequency distributions from varying genotyping error rates and patterns. Bioinformatics (Oxford, England). 20: 1022-32. PMID 14764571 DOI: 10.1093/Bioinformatics/Bth034  0.661
2003 Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, ... ... Cutler DJ, et al. Comparative analyses of multi-species sequences from targeted genomic regions. Nature. 424: 788-93. PMID 12917688 DOI: 10.1038/Nature01858  0.531
2003 Badano JL, Kim JC, Hoskins BE, Lewis RA, Ansley SJ, Cutler DJ, Castellan C, Beales PL, Leroux MR, Katsanis N. Heterozygous mutations in BBS1, BBS2 and BBS6 have a potential epistatic effect on Bardet-Biedl patients with two mutations at a second BBS locus. Human Molecular Genetics. 12: 1651-9. PMID 12837689 DOI: 10.1093/Hmg/Ddg188  0.363
2003 Mitchell AA, Cutler DJ, Chakravarti A. Undetected genotyping errors cause apparent overtransmission of common alleles in the transmission/disequilibrium test. American Journal of Human Genetics. 72: 598-610. PMID 12587097 DOI: 10.1086/368203  0.545
2003 Marth G, Schuler G, Yeh R, Davenport R, Agarwala R, Church D, Wheelan S, Baker J, Ward M, Kholodov M, Phan L, Czabarka E, Murvai J, Cutler D, Wooding S, et al. Sequence variations in the public human genome data reflect a bottlenecked population history. Proceedings of the National Academy of Sciences of the United States of America. 100: 376-81. PMID 12502794 DOI: 10.1073/Pnas.222673099  0.556
2003 Belmont JW, Hardenbol P, Willis TD, Yu F, Yang H, Ch'Ang LY, Huang W, Liu B, Shen Y, Tam PKH, Tsui LC, Waye MMY, Wong JTF, Zeng C, Zhang Q, ... ... Cutler DJ, et al. The international HapMap project Nature. 426: 789-796. DOI: 10.1038/Nature02168  0.388
2002 Lin S, Cutler DJ, Zwick ME, Chakravarti A. Haplotype inference in random population samples. American Journal of Human Genetics. 71: 1129-37. PMID 12386835 DOI: 10.1086/344347  0.652
2001 Cutler DJ, Zwick ME, Carrasquillo MM, Yohn CT, Tobin KP, Kashuk C, Mathews DJ, Shah NA, Eichler EE, Warrington JA, Chakravarti A. High-throughput variation detection and genotyping using microarrays. Genome Research. 11: 1913-25. PMID 11691856 DOI: 10.1101/Gr.197201  0.793
2000 Zwick ME, Cutler DJ, Chakravarti A. Patterns of genetic variation in Mendelian and complex traits. Annual Review of Genomics and Human Genetics. 1: 387-407. PMID 11701635 DOI: 10.1146/Annurev.Genom.1.1.387  0.657
Show low-probability matches.