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Sean M Kearney - Publications

Institution:
Massachusetts Institute of Technology, Cambridge, MA, United States
Area:
Ecology, evolution, systems biology, synthetic biology
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Capovilla G, Castro KG, Collani S, Kearney SM, Kehoe DM, Chisholm SW. Chitin degradation by Synechococcus WH7803. Scientific Reports. 13: 19944. PMID 37968300 DOI: 10.1038/s41598-023-47332-0  0.443
2022 Li Y, Watanabe E, Kawashima Y, Plichta DR, Wang Z, Ujike M, Ang QY, Wu R, Furuichi M, Takeshita K, Yoshida K, Nishiyama K, Kearney SM, Suda W, Hattori M, et al. Identification of trypsin-degrading commensals in the large intestine. Nature. 609: 582-589. PMID 36071157 DOI: 10.1038/s41586-022-05181-3  0.589
2022 Kearney SM, Coe A, Castro KG, Chisholm SW. Filter Plating Method for Rendering Picocyanobacteria Cultures Free of Heterotrophic Bacterial Contaminants and Clonal. Frontiers in Microbiology. 13: 821803. PMID 35250937 DOI: 10.3389/fmicb.2022.821803  0.509
2021 Sato Y, Atarashi K, Plichta DR, Arai Y, Sasajima S, Kearney SM, Suda W, Takeshita K, Sasaki T, Okamoto S, Skelly AN, Okamura Y, Vlamakis H, Li Y, Tanoue T, et al. Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians. Nature. PMID 34325466 DOI: 10.1038/s41586-021-03832-5  0.58
2021 Chu ND, Crothers JW, Nguyen LTT, Kearney SM, Smith MB, Kassam Z, Collins C, Xavier R, Moses PL, Alm EJ. Dynamic Colonization of Microbes and Their Functions after Fecal Microbiota Transplantation for Inflammatory Bowel Disease. Mbio. e0097521. PMID 34281401 DOI: 10.1128/mBio.00975-21  0.555
2021 Kearney SM, Thomas E, Coe A, Chisholm SW. Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria. Environmental Microbiome. 16: 1. PMID 33902739 DOI: 10.1186/s40793-020-00370-x  0.489
2021 Groussin M, Poyet M, Sistiaga A, Kearney SM, Moniz K, Noel M, Hooker J, Gibbons SM, Segurel L, Froment A, Mohamed RS, Fezeu A, Juimo VA, Lafosse S, Tabe FE, et al. Elevated rates of horizontal gene transfer in the industrialized human microbiome. Cell. PMID 33794144 DOI: 10.1016/j.cell.2021.02.052  0.674
2021 Diener C, Hoge ACH, Kearney SM, Kusebauch U, Patwardhan S, Moritz RL, Erdman SE, Gibbons SM. Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut. Communications Biology. 4: 316. PMID 33750910 DOI: 10.1038/s42003-021-01841-8  0.619
2020 Bhatnagar S, Cowley ES, Kopf SH, Pérez Castro S, Kearney S, Dawson SC, Hanselmann K, Ruff SE. Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom Environmental Microbiome. 15. DOI: 10.1186/S40793-019-0348-0  0.342
2019 Reese AT, Kearney SM. Incorporating functional trade-offs into studies of the gut microbiota. Current Opinion in Microbiology. 50: 20-27. PMID 31593869 DOI: 10.1016/J.Mib.2019.09.003  0.404
2019 Poyet M, Groussin M, Gibbons SM, Avila-Pacheco J, Jiang X, Kearney SM, Perrotta AR, Berdy B, Zhao S, Lieberman TD, Swanson PK, Smith M, Roesemann S, Alexander JE, Rich SA, et al. A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research. Nature Medicine. PMID 31477907 DOI: 10.1038/S41591-019-0559-3  0.696
2019 Skelly AN, Sato Y, Kearney S, Honda K. Mining the microbiota for microbial and metabolite-based immunotherapies. Nature Reviews. Immunology. PMID 30858494 DOI: 10.1038/S41577-019-0144-5  0.627
2018 Gurry T, Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. Scientific Reports. 8: 12699. PMID 30139999 DOI: 10.1038/S41598-018-30783-1  0.707
2018 Kearney SM, Gibbons SM, Erdman SE, Alm EJ. Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal. Cell Reports. 24: 1842-1851. PMID 30110640 DOI: 10.1016/J.Celrep.2018.07.032  0.692
2018 Kearney SM, Gibbons SM, Poyet M, Gurry T, Bullock K, Allegretti JR, Clish CB, Alm EJ. Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota. The Isme Journal. PMID 29899513 DOI: 10.1038/S41396-018-0192-Z  0.7
2018 Kearney SM, Gibbons SM. Designing synbiotics for improved human health. Microbial Biotechnology. 11: 141-144. PMID 29205932 DOI: 10.1111/1751-7915.12885  0.56
2017 Wilck N, Matus MG, Kearney SM, Olesen SW, Forslund K, Bartolomaeus H, Haase S, Mähler A, Balogh A, Markó L, Vvedenskaya O, Kleiner FH, Tsvetkov D, Klug L, Costea PI, et al. Salt-responsive gut commensal modulates TH17 axis and disease. Nature. PMID 29143823 DOI: 10.1038/Nature24628  0.566
2017 Gibbons SM, Kearney SM, Smillie CS, Alm EJ. Two dynamic regimes in the human gut microbiome. Plos Computational Biology. 13: e1005364. PMID 28222117 DOI: 10.1371/Journal.Pcbi.1005364  0.699
2016 Allegretti JR, Kearney S, Li N, Bogart E, Bullock K, Gerber GK, Bry L, Clish CB, Alm E, Korzenik JR. Recurrent Clostridium difficile infection associates with distinct bile acid and microbiome profiles. Alimentary Pharmacology & Therapeutics. PMID 27086647 DOI: 10.1111/Apt.13616  0.537
2016 Allegretti JR, Storm M, Smith M, Kelly CR, Kearney S, Perrotta A, Elliott RJ, Swanson P, Kassam Z, Alm E. Su1739 Strain-Level Analysis of Microbial Engraftment Associated With Resolution of Recurrent Clostridium difficile Following Fecal Microbiota Transplantation Gastroenterology. 150: S540-S541. DOI: 10.1016/S0016-5085(16)31856-X  0.544
2016 Allegretti JR, Kearney S, Li N, Bogart E, Bullock K, Gerber G, Bry L, Clish CB, Alm E, Korzenik JR. 95 Clostridium difficile Infection Associates With Distinct Bile Acid and Microbiome Profiles Gastroenterology. 150: S24. DOI: 10.1016/S0016-5085(16)30206-2  0.513
2015 Poutahidis T, Varian BJ, Levkovich T, Lakritz JR, Mirabal S, Kwok C, Ibrahim YM, Kearney SM, Chatzigiagkos A, Alm EJ, Erdman SE. Dietary microbes modulate transgenerational cancer risk. Cancer Research. 75: 1197-204. PMID 25716681 DOI: 10.1158/0008-5472.Can-14-2732  0.55
2013 Poutahidis T, Kearney SM, Levkovich T, Qi P, Varian BJ, Lakritz JR, Ibrahim YM, Chatzigiagkos A, Alm EJ, Erdman SE. Microbial symbionts accelerate wound healing via the neuropeptide hormone oxytocin. Plos One. 8: e78898. PMID 24205344 DOI: 10.1371/Journal.Pone.0078898  0.55
2013 Poutahidis T, Kleinewietfeld M, Smillie C, Levkovich T, Perrotta A, Bhela S, Varian BJ, Ibrahim YM, Lakritz JR, Kearney SM, Chatzigiagkos A, Hafler DA, Alm EJ, Erdman SE. Microbial reprogramming inhibits Western diet-associated obesity. Plos One. 8: e68596. PMID 23874682 DOI: 10.1371/Journal.Pone.0068596  0.717
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