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Bo Li - Publications

Affiliations: 
Bioinformatics The University of Texas Southwestern Medical Center, USA 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Feng Q, Liu Z, Yu X, Huang T, Chen J, Wang J, Wilhelm J, Li S, Song J, Li W, Sun Z, Sumer BD, Li B, Fu YX, Gao J. Lactate increases stemness of CD8 + T cells to augment anti-tumor immunity. Nature Communications. 13: 4981. PMID 36068198 DOI: 10.1038/s41467-022-32521-8  0.328
2020 Li Y, Burgman B, McGrail DJ, Sun M, Qi D, Shukla SA, Wu E, Capasso A, Lin SY, Wu CJ, Eckhardt SG, Mills GB, Li B, Sahni N, Yi SS. Integrated Genomic Characterization of the Human Immunome in Cancer. Cancer Research. PMID 32855206 DOI: 10.1158/0008-5472.Can-20-0384  0.342
2020 Beshnova D, Ye J, Onabolu O, Moon B, Zheng W, Fu YX, Brugarolas J, Lea J, Li B. De novo prediction of cancer-associated T cell receptors for noninvasive cancer detection. Science Translational Medicine. 12. PMID 32817363 DOI: 10.1126/Scitranslmed.Aaz3738  0.342
2020 Li T, Fu J, Zeng Z, Cohen D, Li J, Chen Q, Li B, Liu XS. TIMER2.0 for analysis of tumor-infiltrating immune cells. Nucleic Acids Research. PMID 32442275 DOI: 10.1093/Nar/Gkaa407  0.385
2020 Li B, Li T, Liu JS, Liu XS. Computational Deconvolution of Tumor-Infiltrating Immune Components with Bulk Tumor Gene Expression Data. Methods in Molecular Biology (Clifton, N.J.). 2120: 249-262. PMID 32124325 DOI: 10.1007/978-1-0716-0327-7_18  0.397
2020 Hu XS, Zhang J, Liu J, Li B, Liu XS. Abstract B92: Landscape of B-cell immunity and related immune evasion in human cancers Cancer Immunology Research. 8. DOI: 10.1158/2326-6074.Tumimm18-B92  0.362
2019 Li B, Zhang H, Liu L, Zhang J, Chen J, Ye J, Shukla SA, Qiao J, Zhan X, Chen H, Wu CJ, Fu YX. Investigation of antigen-specific T cell receptor clusters in human cancers. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 31831563 DOI: 10.1158/1078-0432.Ccr-19-3249  0.355
2019 Zhang J, Hu X, Wang J, Sahu AD, Cohen D, Song L, Ouyang Z, Fan J, Wang B, Fu J, Gu S, Sade-Feldman M, Hacohen N, Li W, Ying X, ... Li B, et al. Immune receptor repertoires in pediatric and adult acute myeloid leukemia. Genome Medicine. 11: 73. PMID 31771646 DOI: 10.1186/S13073-019-0681-3  0.521
2019 Hu X, Zhang J, Wang J, Fu J, Li T, Zheng X, Wang B, Gu S, Jiang P, Fan J, Ying X, Zhang J, Carroll MC, Wucherpfennig KW, Hacohen N, ... ... Li B, et al. Publisher Correction: Landscape of B cell immunity and related immune evasion in human cancers. Nature Genetics. PMID 31101897 DOI: 10.1038/S41588-019-0437-4  0.549
2019 Hu X, Zhang J, Wang J, Fu J, Li T, Zheng X, Wang B, Gu S, Jiang P, Fan J, Ying X, Zhang J, Carroll MC, Wucherpfennig KW, Hacohen N, ... ... Li B, et al. Landscape of B cell immunity and related immune evasion in human cancers. Nature Genetics. PMID 30742113 DOI: 10.1038/S41588-018-0339-X  0.58
2019 Li B. Abstract SY11-02: Antigen-independent de novo prediction of cancer-associated immune repertoire Cancer Research. 79. DOI: 10.1158/1538-7445.Sabcs18-Sy11-02  0.346
2019 Li B. Abstract 1624: Antigen-independent de novo prediction of cancer-associated TCR repertoire Cancer Research. 79: 1624-1624. DOI: 10.1158/1538-7445.Sabcs18-1624  0.341
2019 Zhang H, Liu L, Chen J, Li B. Abstract LB-145: Investigation of T cell dynamic changes in tumor progression by using sing-cell data Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-145  0.324
2018 Wang Z, Cao S, Morris JS, Ahn J, Liu R, Tyekucheva S, Gao F, Li B, Lu W, Tang X, Wistuba II, Bowden M, Mucci L, Loda M, Parmigiani G, et al. Transcriptome Deconvolution of Heterogeneous Tumor Samples with Immune Infiltration. Iscience. 9: 451-460. PMID 30469014 DOI: 10.1016/J.Isci.2018.10.028  0.337
2018 Hu X, Zhang J, Liu JS, Li B, Liu XS. Evaluation of immune repertoire inference methods from RNA-seq data. Nature Biotechnology. 36: 1034. PMID 30412202 DOI: 10.1038/Nbt.4294  0.515
2018 Li L, Li L, Li W, Chen T, Bin Zou, Zhao L, Wang H, Wang X, Xu L, Liu X, Wang D, Li B, Mak TW, Du W, Yang X, et al. TAp73-induced phosphofructokinase-1 transcription promotes the Warburg effect and enhances cell proliferation. Nature Communications. 9: 4683. PMID 30409970 DOI: 10.1038/S41467-018-07127-8  0.309
2018 Jiang P, Gu S, Pan D, Fu J, Sahu A, Hu X, Li Z, Traugh N, Bu X, Li B, Liu J, Freeman GJ, Brown MA, Wucherpfennig KW, Liu XS. Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response. Nature Medicine. PMID 30127393 DOI: 10.1038/S41591-018-0136-1  0.35
2018 Chen J, Li HL, Li BB, Li W, Ma D, Li YH, Liu T. Serum- and glucocorticoid-inducible kinase 3 is a potential oncogene in nasopharyngeal carcinoma. Brazilian Journal of Otorhinolaryngology. PMID 30108027 DOI: 10.1016/j.bjorl.2018.05.012  0.301
2018 Xing X, Guo J, Wen X, Ding G, Li B, Dong B, Feng Q, Li S, Zhang J, Cheng X, Guo T, Du H, Hu Y, Wang X, Li L, et al. Analysis of PD1, PDL1, PDL2 expression and T cells infiltration in 1014 gastric cancer patients. Oncoimmunology. 7: e1356144. PMID 29399387 DOI: 10.1080/2162402X.2017.1356144  0.319
2017 Li T, Fan J, Wang B, Traugh N, Chen Q, Liu JS, Li B, Liu XS. TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells. Cancer Research. 77: e108-e110. PMID 29092952 DOI: 10.1158/0008-5472.Can-17-0307  0.58
2017 Mei S, Meyer CA, Zheng R, Qin Q, Wu Q, Jiang P, Li B, Shi X, Wang B, Fan J, Shih C, Brown M, Zang C, Liu XS. Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer. Cancer Research. 77: e19-e22. PMID 29092931 DOI: 10.1158/0008-5472.Can-17-0327  0.641
2017 Xing X, Jia S, Wu J, Feng Q, Dong B, Li B, Jia Y, Shan F, Li Y, Zhang Y, Hu Y, Wang X, Liu X, Yu S, Zhang L, et al. Clonality analysis of synchronous gastroesophageal junction carcinoma and distal gastric cancer by whole-exome sequencing. The Journal of Pathology. PMID 28671728 DOI: 10.1002/Path.4932  0.311
2017 Li B, Li T, Wang B, Dou R, Zhang J, Liu JS, Liu XS. Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA-seq data. Nature Genetics. 49: 482-483. PMID 28358132 DOI: 10.1038/Ng.3820  0.499
2016 Li B, Severson E, Pignon JC, Zhao H, Li T, Novak J, Jiang P, Shen H, Aster JC, Rodig S, Signoretti S, Liu JS, Liu XS. Comprehensive analyses of tumor immunity: implications for cancer immunotherapy. Genome Biology. 17: 174. PMID 27549193 DOI: 10.1186/S13059-016-1028-7  0.567
2016 Li B, Li T, Pignon JC, Wang B, Wang J, Shukla SA, Dou R, Chen Q, Hodi FS, Choueiri TK, Wu C, Hacohen N, Signoretti S, Liu JS, Liu XS. Landscape of tumor-infiltrating T cell repertoire of human cancers. Nature Genetics. PMID 27240091 DOI: 10.1038/Ng.3581  0.566
2016 Zang C, Wang T, Deng K, Li B, Hu S, Qin Q, Xiao T, Zhang S, Meyer CA, He HH, Brown M, Liu JS, Xie Y, Liu XS. High-dimensional genomic data bias correction and data integration using MANCIE. Nature Communications. 7: 11305. PMID 27072482 DOI: 10.1038/Ncomms11305  0.636
2016 Zang C, Wang T, Deng K, Li B, Hu S, Qin Q, Xiao T, Zhang S, Meyer CA, He HH, Brown M, Liu JS, Xie Y, Liu XS. Abstract B24: High-dimensional genomic data integration and bias correction using MANCIE Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-B24  0.554
2015 Jiang P, Wang H, Li W, Zang C, Li B, Wong YJ, Meyer C, Liu JS, Aster JC, Liu XS. Network analysis of gene essentiality in functional genomics experiments. Genome Biology. 16: 239. PMID 26518695 DOI: 10.1186/S13059-015-0808-9  0.631
2015 Song JB, Shu XX, Shen Q, Li BW, Song J, Yang ZM. Altered Fruit and Seed Development of Transgenic Rapeseed (Brassica napus) Over-Expressing MicroRNA394. Plos One. 10: e0125427. PMID 25978066 DOI: 10.1371/journal.pone.0125427  0.305
2014 Li B, Li JZ. A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data. Genome Biology. 15: 473. PMID 25253082 DOI: 10.1186/S13059-014-0473-4  0.332
2012 Li B, Senbabaoglu Y, Peng W, Yang ML, Xu J, Li JZ. Genomic estimates of aneuploid content in glioblastoma multiforme and improved classification. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 18: 5595-605. PMID 22912392 DOI: 10.1158/1078-0432.Ccr-12-1427  0.303
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