Allison Lopatkin - Publications

2017 Biomedical Engineering Duke University, Durham, NC 
 2020- Biological Sciences Barnard College, New York, NY, United States 

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Palomino A, Gewurz D, DeVine L, Zajmi U, Moralez J, Abu-Rumman F, Smith RP, Lopatkin AJ. Metabolic genes on conjugative plasmids are highly prevalent in Escherichia coli and can protect against antibiotic treatment. The Isme Journal. PMID 36261510 DOI: 10.1038/s41396-022-01329-1  0.395
2022 Wang T, Weiss A, Aqeel A, Wu F, Lopatkin AJ, David LA, You L. Horizontal gene transfer enables programmable gene stability in synthetic microbiota. Nature Chemical Biology. PMID 36050493 DOI: 10.1038/s41589-022-01114-3  0.503
2022 Gomez-Simmonds A, Annavajhala MK, Tang N, Rozenberg FD, Ahmad M, Park H, Lopatkin AJ, Uhlemann AC. Population structure of blaKPC-harbouring IncN plasmids at a New York City medical centre and evidence for multi-species horizontal transmission. The Journal of Antimicrobial Chemotherapy. PMID 35412609 DOI: 10.1093/jac/dkac114  0.325
2021 Lopatkin AJ, Yang JH. Digital Insights Into Nucleotide Metabolism and Antibiotic Treatment Failure. Frontiers in Digital Health. 3. PMID 34355212 DOI: 10.3389/fdgth.2021.583468  0.32
2021 Prensky H, Gomez-Simmonds A, Uhlemann AC, Lopatkin AJ. Conjugation dynamics depend on both the plasmid acquisition cost and the fitness cost. Molecular Systems Biology. 17: e9913. PMID 33646643 DOI: 10.15252/msb.20209913  0.328
2021 Lopatkin AJ, Bening SC, Manson AL, Stokes JM, Kohanski MA, Badran AH, Earl AM, Cheney NJ, Yang JH, Collins JJ. Clinically relevant mutations in core metabolic genes confer antibiotic resistance. Science (New York, N.Y.). 371. PMID 33602825 DOI: 10.1126/science.aba0862  0.315
2021 Lopatkin AJ, Yang JH. Digital Insights Into Nucleotide Metabolism and Antibiotic Treatment Failure Frontiers in Digital Health. 3. DOI: 10.3389/fdgth.2021.583468  0.32
2020 Bethke JH, Davidovich A, Cheng L, Lopatkin AJ, Song W, Thaden JT, Fowler VG, Xiao M, You L. Environmental and genetic determinants of plasmid mobility in pathogenic . Science Advances. 6: eaax3173. PMID 32042895 DOI: 10.1126/Sciadv.Aax3173  0.599
2020 Sysoeva TA, Kim Y, Rodriguez J, Lopatkin AJ, You L. Growth‐stage‐dependent regulation of conjugation Aiche Journal. 66. DOI: 10.1002/Aic.16848  0.665
2019 Lopatkin AJ, Stokes JM, Zheng EJ, Yang JH, Takahashi MK, You L, Collins JJ. Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate. Nature Microbiology. PMID 31451773 DOI: 10.1038/S41564-019-0536-0  0.521
2019 Stokes JM, Gutierrez A, Lopatkin AJ, Andrews IW, French S, Matic I, Brown ED, Collins JJ. A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria. Nature Methods. PMID 30858599 DOI: 10.1038/S41592-019-0333-Y  0.303
2019 Wu F, Lopatkin AJ, Needs DA, Lee CT, Mukherjee S, You L. A unifying framework for interpreting and predicting mutualistic systems. Nature Communications. 10: 242. PMID 30651549 DOI: 10.1038/S41467-018-08188-5  0.426
2018 Meredith HR, Andreani V, Ma HR, Lopatkin AJ, Lee AJ, Anderson DJ, Batt G, You L. Applying ecological resistance and resilience to dissect bacterial antibiotic responses. Science Advances. 4: eaau1873. PMID 30525104 DOI: 10.1126/Sciadv.Aau1873  0.585
2017 Lopatkin AJ, Meredith HR, Srimani JK, Pfeiffer C, Durrett R, You L. Persistence and reversal of plasmid-mediated antibiotic resistance. Nature Communications. 8: 1689. PMID 29162798 DOI: 10.1038/S41467-017-01532-1  0.623
2017 Srimani JK, Huang S, Lopatkin AJ, You L. Drug detoxification dynamics explain the postantibiotic effect. Molecular Systems Biology. 13: 948. PMID 29061668 DOI: 10.15252/Msb.20177723  0.737
2017 Wilson CE, Lopatkin AJ, Craddock TJ, Driscoll WW, Eldakar OT, Lopez JV, Smith RP. Cooperation and competition shape ecological resistance during periodic spatial disturbance of engineered bacteria. Scientific Reports. 7: 440. PMID 28348396 DOI: 10.1038/S41598-017-00588-9  0.513
2016 Cao Y, Lopatkin A, You L. Elements of biological oscillations in time and space. Nature Structural & Molecular Biology. 23: 1030-1034. PMID 27922613 DOI: 10.1038/Nsmb.3320  0.548
2016 Lopatkin AJ, Sysoeva TA, You L. Dissecting the effects of antibiotics on horizontal gene transfer: Analysis suggests a critical role of selection dynamics. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 27699821 DOI: 10.1002/Bies.201600133  0.742
2016 Lopatkin AJ, Huang S, Smith RP, Srimani JK, Sysoeva TA, Bewick S, Karig DK, You L. Antibiotics as a selective driver for conjugation dynamics. Nature Microbiology. 1: 16044. PMID 27572835 DOI: 10.1038/Nmicrobiol.2016.44  0.665
2015 Huang S, Srimani JK, Lee AJ, Zhang Y, Lopatkin AJ, Leong KW, You L. Dynamic control and quantification of bacterial population dynamics in droplets. Biomaterials. 61: 239-45. PMID 26005763 DOI: 10.1016/J.Biomaterials.2015.05.038  0.708
2015 Meredith HR, Lopatkin AJ, Anderson DJ, You L. Bacterial temporal dynamics enable optimal design of antibiotic treatment. Plos Computational Biology. 11: e1004201. PMID 25905796 DOI: 10.1371/Journal.Pcbi.1004201  0.568
2015 Lee TJ, Wong J, Bae S, Lee AJ, Lopatkin A, Yuan F, You L. A power-law dependence of bacterial invasion on mammalian host receptors. Plos Computational Biology. 11: e1004203. PMID 25879937 DOI: 10.1371/Journal.Pcbi.1004203  0.465
2015 Meredith HR, Srimani JK, Lee AJ, Lopatkin AJ, You L. Collective antibiotic tolerance: mechanisms, dynamics and intervention. Nature Chemical Biology. 11: 182-8. PMID 25689336 DOI: 10.1038/Nchembio.1754  0.63
2014 Lopatkin AJ, You L. Synthetic biology looks good on paper. Cell. 159: 718-20. PMID 25417149 DOI: 10.1016/J.Cell.2014.10.003  0.426
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