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Mustafa Mir, PhD - Publications

Affiliations: 
2021- Cell and Developmental Biology University of Pennsylvania Perelman School of Medicine 
Area:
Transcription, Nuclear Organization, Biophysics, Microscopy, Single Molecule Imaging
Website:
www.mir-lab.com
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gaskill MM, Soluri IV, Branks AE, Boka AP, Stadler MR, Vietor K, Huang HS, Gibson TJ, Mukherjee A, Mir M, Blythe SA, Harrison MM. Localization of the Drosophila pioneer factor GAF to subnuclear foci is driven by DNA binding and required to silence satellite repeat expression. Developmental Cell. PMID 37478844 DOI: 10.1016/j.devcel.2023.06.010  0.708
2021 Boka AP, Mukherjee A, Mir M. Single-molecule tracking technologies for quantifying the dynamics of gene regulation in cells, tissue and embryos. Development (Cambridge, England). 148. PMID 34490887 DOI: 10.1242/dev.199744  0.719
2020 Chong S, Mir M. Towards decoding the sequence-based grammar governing the functions of intrinsically disordered protein regions. Journal of Molecular Biology. PMID 33248138 DOI: 10.1016/j.jmb.2020.11.023  0.442
2019 McSwiggen DT, Mir M, Darzacq X, Tjian R. Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences. Genes & Development. PMID 31594803 DOI: 10.1101/Gad.331520.119  0.671
2019 Parker MW, Bell M, Mir M, Kao JA, Darzacq X, Botchan MR, Berger JM. A new class of disordered elements controls DNA replication through initiator self-assembly. Elife. 8. PMID 31560342 DOI: 10.7554/Elife.48562  0.551
2018 Mir M, Stadler MR, Ortiz SA, Hannon CE, Harrison MM, Darzacq X, Eisen MB. Dynamic multifactor hubs interact transiently with sites of active transcription in embryos. Elife. 7. PMID 30589412 DOI: 10.7554/Elife.40497  0.581
2018 Mir M, Reimer A, Stadler M, Tangara A, Hansen AS, Hockemeyer D, Eisen MB, Garcia H, Darzacq X. Single Molecule Imaging in Live Embryos Using Lattice Light-Sheet Microscopy. Methods in Molecular Biology (Clifton, N.J.). 1814: 541-559. PMID 29956254 DOI: 10.1007/978-1-4939-8591-3_32  0.621
2017 Mir M, Reimer A, Haines JE, Li XY, Stadler M, Garcia H, Eisen MB, Darzacq X. Dense Bicoid hubs accentuate binding along the morphogen gradient. Genes & Development. 31: 1784-1794. PMID 28982761 DOI: 10.1101/Gad.305078.117  0.578
2017 Woringer M, Darzacq X, Zimmer C, Mir M. Faster and less phototoxic 3D fluorescence microscopy using a versatile compressed sensing scheme. Optics Express. 25: 13668-13683. PMID 28788909 DOI: 10.1364/OE.25.013668  0.552
2017 Strom AR, Emelyanov AV, Mir M, Fyodorov DV, Darzacq X, Karpen GH. Phase separation drives heterochromatin domain formation. Nature. PMID 28636597 DOI: 10.1016/J.Bpj.2017.11.2460  0.572
2017 Wichner SM, Mann VR, Powers AS, Segal MA, Mir M, Bandaria JN, DeWitt MA, Darzacq X, Yildiz A, Cohen BE. Covalent Protein Labeling and Improved Single Molecule Optical Properties of Aqueous CdSe/CdS Quantum Dots. Acs Nano. PMID 28618223 DOI: 10.1021/Acsnano.7B01470  0.542
2017 Qin P, Parlak M, Kuscu C, Bandaria J, Mir M, Szlachta K, Singh R, Darzacq X, Yildiz A, Adli M. Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9. Nature Communications. 8: 14725. PMID 28290446 DOI: 10.1038/Ncomms14725  0.609
2016 Ma L, Rajshekhar G, Wang R, Bhaduri B, Sridharan S, Mir M, Chakraborty A, Iyer R, Prasanth S, Millet L, Gillette MU, Popescu G. Phase correlation imaging of unlabeled cell dynamics. Scientific Reports. 6: 32702. PMID 27615512 DOI: 10.1038/Srep32702  0.546
2016 Majeed H, Sridharan S, Mir M, Ma L, Min E, Jung W, Popescu G. Quantitative phase imaging for medical diagnosis. Journal of Biophotonics. PMID 27539534 DOI: 10.1002/Jbio.201600113  0.506
2016 Abrahamsson S, Ilic R, Wisniewski J, Mehl B, Yu L, Chen L, Davanco M, Oudjedi L, Fiche JB, Hajj B, Jin X, Pulupa J, Cho C, Mir M, El Beheiry M, et al. Multifocus microscopy with precise color multi-phase diffractive optics applied in functional neuronal imaging. Biomedical Optics Express. 7: 855-69. PMID 27231594 DOI: 10.1364/Boe.7.000855  0.608
2016 Raman R, Bhaduri B, Mir M, Shkumatov A, Lee MK, Popescu G, Kong H, Bashir R. Bioprinting: High-Resolution Projection Microstereolithography for Patterning of Neovasculature (Adv. Healthcare Mater. 5/2016). Advanced Healthcare Materials. 5: 622. PMID 26959420 DOI: 10.1002/Adhm.201670025  0.401
2016 Abrahamsson S, Ilic R, Wisniewski J, Mehl B, Yu L, Chen L, Davanco M, Oudjedi L, Fiche JB, Hajj B, Jin X, Pulupa J, Cho C, Mir M, El Beheiry M, et al. Multifocus microscopy with precise color multiphase diffractive optics applied in functional neuronal imaging Biomedical Optics Express. 7: 855-869. DOI: 10.1364/BOE.7.000855  0.597
2016 Ma L, Gannavarpu R, Wang R, Bhaduri B, Sridharan S, Mir MA, Chakraborty A, Prasanth SG, Millet L, Gillette MU, Popescu G. Phase correlation imaging (PCI) for cell dynamics investigation (Conference Presentation) Proceedings of Spie. 9718. DOI: 10.1117/12.2217666  0.548
2015 Raman R, Bhaduri B, Mir M, Shkumatov A, Lee MK, Popescu G, Kong H, Bashir R. High-Resolution Projection Microstereolithography for Patterning of Neovasculature. Advanced Healthcare Materials. PMID 26696464 DOI: 10.1002/Adhm.201500721  0.5
2015 Mir M, Kim T, Majumder A, Xiang M, Wang R, Liu SC, Gillette MU, Stice S, Popescu G. Corrigendum: Label-Free Characterization of Emerging Human Neuronal Networks. Scientific Reports. 5: 11311. PMID 26122479 DOI: 10.1038/Srep11311  0.462
2014 Mir M, Kim T, Majumder A, Xiang M, Wang R, Liu SC, Gillette MU, Stice S, Popescu G. Label-free characterization of emerging human neuronal networks. Scientific Reports. 4: 4434. PMID 24658536 DOI: 10.1038/Srep04434  0.462
2014 Mir M, Bergamaschi A, Katzenellenbogen BS, Popescu G. Highly sensitive quantitative imaging for monitoring single cancer cell growth kinetics and drug response. Plos One. 9: e89000. PMID 24558461 DOI: 10.1371/Journal.Pone.0089000  0.501
2014 Popescu G, Park K, Mir M, Bashir R. New technologies for measuring single cell mass. Lab On a Chip. 14: 646-52. PMID 24322181 DOI: 10.1039/C3Lc51033F  0.507
2014 Kim T, Zhou R, Mir M, Babacan SD, Carney PS, Goddard LL, Popescu G. White-light diffraction tomography of unlabelled live cells Nature Photonics. 8: 256-263. DOI: 10.1038/nphoton.2013.350  0.542
2013 Wang R, Kim T, Mir M, Popescu G. Nanoscale fluctuations and surface tension measurements in droplets using phase-resolved low-coherence interferometry. Applied Optics. 52: A177-81. PMID 23292390 DOI: 10.1364/Ao.52.00A177  0.478
2012 Mir M, Babacan SD, Bednarz M, Do MN, Golding I, Popescu G. Visualizing Escherichia coli sub-cellular structure using sparse deconvolution Spatial Light Interference Tomography. Plos One. 7: e39816. PMID 22761910 DOI: 10.1371/Journal.Pone.0039816  0.544
2012 Bhaduri B, Pham H, Mir M, Popescu G. Diffraction phase microscopy with white light. Optics Letters. 37: 1094-6. PMID 22446236 DOI: 10.1364/Ol.37.001094  0.516
2012 Mir M, Bhaduri B, Wang R, Zhu R, Popescu G. Chapter 3 - Quantitative Phase Imaging Progress in Optics. 57: 133-217. DOI: 10.1016/B978-0-44-459422-8.00003-5  0.501
2012 Mir M, Babacan SD, Bednarz M, Do MN, Golding I, Popescu G. Imaging sub-cellular structures using three-dimensional sparse deconvolution SLIM Biomedical Optics, Biomed 2012.  0.483
2011 Mir M, Tangella K, Popescu G. Blood testing at the single cell level using quantitative phase and amplitude microscopy. Biomedical Optics Express. 2: 3259-66. PMID 22162816 DOI: 10.1364/Boe.2.003259  0.523
2011 Sridharan S, Mir M, Popescu G. Simultaneous optical measurements of cell motility and growth. Biomedical Optics Express. 2: 2815-20. PMID 22025987 DOI: 10.1364/Boe.2.002815  0.474
2011 Lim J, Ding H, Mir M, Zhu R, Tangella K, Popescu G. Born approximation model for light scattering by red blood cells. Biomedical Optics Express. 2: 2784-91. PMID 22025984 DOI: 10.1364/Boe.2.002784  0.47
2011 Mir M, Wang Z, Shen Z, Bednarz M, Bashir R, Golding I, Prasanth SG, Popescu G. Optical measurement of cycle-dependent cell growth. Proceedings of the National Academy of Sciences of the United States of America. 108: 13124-9. PMID 21788503 DOI: 10.1073/Pnas.1100506108  0.527
2011 Wang R, Ding H, Mir M, Tangella K, Popescu G. Effective 3D viscoelasticity of red blood cells measured by diffraction phase microscopy. Biomedical Optics Express. 2: 485-90. PMID 21412454 DOI: 10.1364/Boe.2.000485  0.514
2011 Wang Z, Millet L, Mir M, Ding H, Unarunotai S, Rogers J, Gillette MU, Popescu G. Spatial light interference microscopy (SLIM). Optics Express. 19: 1016-26. PMID 21263640 DOI: 10.1364/Fio.2010.Fthk1  0.548
2011 Wang Z, Marks D, Carney S, Mir M, Popescu G. Tomographic reconstruction by quantitative phase imaging with broadband fields Ntm. DOI: 10.1364/Ntm.2011.Ntub2  0.484
2010 Mir M, Ding H, Wang Z, Reedy J, Tangella K, Popescu G. Blood screening using diffraction phase cytometry. Journal of Biomedical Optics. 15: 027016. PMID 20459290 DOI: 10.1117/1.3369965  0.473
2009 Mir M, Wang Z, Tangella K, Popescu G. Diffraction Phase Cytometry: blood on a CD-ROM. Optics Express. 17: 2579-85. PMID 19219161 DOI: 10.1364/Oe.17.002579  0.519
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