| Year |
Citation |
Score |
| 2024 |
Zhang X, Xu J, Hu J, Zhang S, Hao Y, Zhang D, Qian H, Wang D, Fu XD. Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation. Nature Communications. 15: 6031. PMID 39019869 DOI: 10.1038/s41467-024-50298-w |
0.362 |
|
| 2023 |
Liang Z, Gilbreath C, Liu W, Wang Y, Zhang MQ, Zhang DE, Wu S, Fu XD. Chromatin-associated RNA Dictates the ecDNA Interactome in the Nucleus. Biorxiv : the Preprint Server For Biology. PMID 37547001 DOI: 10.1101/2023.07.27.550855 |
0.363 |
|
| 2022 |
Zhang C, Wang D, Hao Y, Wu S, Luo J, Xue Y, Wang D, Li G, Liu L, Shao C, Li H, Yuan J, Zhu M, Fu XD, Yang X, et al. LncRNA CCTT-mediated RNA-DNA and RNA-protein interactions facilitate the recruitment of CENP-C to centromeric DNA during kinetochore assembly. Molecular Cell. 82: 4018-4032.e9. PMID 36332605 DOI: 10.1016/j.molcel.2022.09.022 |
0.324 |
|
| 2022 |
Huang YJ, Chen JY, Yan M, Davis AG, Miyauchi S, Chen L, Hao Y, Katz S, Bejar R, Abdel-Wahab O, Fu XD, Zhang DE. RUNX1 deficiency cooperates with SRSF2 mutation to induce multilineage hematopoietic defects characteristic of MDS. Blood Advances. PMID 36206200 DOI: 10.1182/bloodadvances.2022007804 |
0.46 |
|
| 2022 |
Yuan B, Zhou X, Suzuki K, Ramos-Mandujano G, Wang M, Tehseen M, Cortés-Medina LV, Moresco JJ, Dunn S, Hernandez-Benitez R, Hishida T, Kim NY, Andijani MM, Bi C, Ku M, ... ... Fu XD, et al. Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing. Nature Communications. 13: 3646. PMID 35752626 DOI: 10.1038/s41467-022-31220-8 |
0.392 |
|
| 2022 |
Zhang X, Hao Y, Fu XD. Mapping R-Loops Using Catalytically Inactive RNaseH1 (R-ChIP). Methods in Molecular Biology (Clifton, N.J.). 2528: 359-372. PMID 35704204 DOI: 10.1007/978-1-0716-2477-7_24 |
0.31 |
|
| 2022 |
Zhang D, Liu L, Jin S, Tota E, Li Z, Piao X, Zhang X, Fu XD, Devaraj NK. Site-Specific and Enzymatic Cross-Linking of sgRNA Enables Wavelength-Selectable Photoactivated Control of CRISPR Gene Editing. Journal of the American Chemical Society. PMID 35257575 DOI: 10.1021/jacs.1c12166 |
0.328 |
|
| 2021 |
Lin R, Zhong X, Zhou Y, Geng H, Hu Q, Huang Z, Hu J, Fu XD, Chen L, Chen JY. R-loopBase: a knowledgebase for genome-wide R-loop formation and regulation. Nucleic Acids Research. PMID 34792163 DOI: 10.1093/nar/gkab1103 |
0.417 |
|
| 2021 |
Li L, Luo H, Lim DH, Han L, Li Y, Fu XD, Qi Y. Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis. Nature Plants. 7: 1364-1378. PMID 34650265 DOI: 10.1038/s41477-021-01004-x |
0.365 |
|
| 2021 |
Qiu Z, Zhao L, Shen JZ, Liang Z, Wu Q, Yang K, Min L, Gimple RC, Yang Q, Bhargava S, Jin C, Kim C, Hinz D, Dixit D, Bernatchez JA, ... ... Fu XD, et al. Transcription Elongation Machinery Is a Druggable Dependency and Potentiates Immunotherapy in Glioblastoma Stem Cells. Cancer Discovery. PMID 34615656 DOI: 10.1158/2159-8290.CD-20-1848 |
0.302 |
|
| 2021 |
Davis AG, Einstein JM, Zheng D, Jayne ND, Fu XD, Tian B, Yeo GW, Zhang DE. A CRISPR RNA-binding protein screen reveals regulators of RUNX1 isoform generation. Blood Advances. 5: 1310-1323. PMID 33656539 DOI: 10.1182/bloodadvances.2020002090 |
0.371 |
|
| 2021 |
Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, ... ... Fu XD, et al. Author Correction: A large-scale binding and functional map of human RNA-binding proteins. Nature. PMID 33402748 DOI: 10.1038/s41586-020-03067-w |
0.454 |
|
| 2020 |
Hao Y, Wang D, Wu S, Li X, Shao C, Zhang P, Chen JY, Lim DH, Fu XD, Chen R, He S. Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division. Genome Research. PMID 33060173 DOI: 10.1101/gr.256131.119 |
0.495 |
|
| 2020 |
Xu J, Wang W, Xu L, Chen JY, Chong J, Oh J, Leschziner AE, Fu XD, Wang D. Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers. Proceedings of the National Academy of Sciences of the United States of America. PMID 32989164 DOI: 10.1073/pnas.2013379117 |
0.459 |
|
| 2020 |
Gao K, Cheng M, Zuo X, Lin J, Hoogewijs K, Murphy MP, Fu XD, Zhang X. Active RNA interference in mitochondria. Cell Research. PMID 32807841 DOI: 10.1038/S41422-020-00394-5 |
0.316 |
|
| 2020 |
Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, ... ... Fu XD, et al. A large-scale binding and functional map of human RNA-binding proteins. Nature. 583: 711-719. PMID 32728246 DOI: 10.1038/S41586-020-2077-3 |
0.534 |
|
| 2020 |
Van Nostrand EL, Pratt GA, Yee BA, Wheeler EC, Blue SM, Mueller J, Park SS, Garcia KE, Gelboin-Burkhart C, Nguyen TB, Rabano I, Stanton R, Sundararaman B, Wang R, Fu XD, et al. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins. Genome Biology. 21: 90. PMID 32252787 DOI: 10.1186/S13059-020-01982-9 |
0.337 |
|
| 2020 |
Fu XD. RNA helicases regulate RNA condensates. Cell Research. PMID 32152418 DOI: 10.1038/S41422-020-0296-7 |
0.323 |
|
| 2020 |
Chen JY, Lim DH, Fu XD. Mechanistic Dissection of RNA-Binding Proteins in Regulated Gene Expression at Chromatin Levels. Cold Spring Harbor Symposia On Quantitative Biology. PMID 31900328 DOI: 10.1101/Sqb.2019.84.039222 |
0.549 |
|
| 2019 |
Xiao R, Chen JY, Liang Z, Luo D, Chen G, Lu ZJ, Chen Y, Zhou B, Li H, Du X, Yang Y, San M, Wei X, Liu W, Lécuyer E, ... ... Fu XD, et al. Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription. Cell. 178: 107-121.e18. PMID 31251911 DOI: 10.1016/J.Cell.2019.06.001 |
0.55 |
|
| 2019 |
Zhou B, Li X, Luo D, Lim DH, Zhou Y, Fu XD. GRID-seq for comprehensive analysis of global RNA-chromatin interactions. Nature Protocols. PMID 31175345 DOI: 10.1038/S41596-019-0172-4 |
0.353 |
|
| 2019 |
Li X, Fu XD. Chromatin-associated RNAs as facilitators of functional genomic interactions. Nature Reviews. Genetics. PMID 31160792 DOI: 10.1038/S41576-019-0135-1 |
0.386 |
|
| 2019 |
Chen JY, Zhang X, Fu XD, Chen L. R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1. Nature Protocols. PMID 30996261 DOI: 10.1038/S41596-019-0154-6 |
0.494 |
|
| 2019 |
Liu C, Spinozzi S, Chen JY, Fang X, Feng W, Perkins G, Cattaneo P, Guimarães-Camboa N, Dalton ND, Peterson KL, Wu T, Ouyang K, Fu XD, Evans SM, Chen J. Nexilin is a New Component of Junctional Membrane Complexes Required for Cardiac T-Tubule Formation. Circulation. PMID 30982350 DOI: 10.1161/Circulationaha.119.039751 |
0.351 |
|
| 2018 |
Bao X, Guo X, Yin M, Tariq M, Lai Y, Kanwal S, Zhou J, Li N, Lv Y, Pulido-Quetglas C, Wang X, Ji L, Khan MJ, Zhu X, Luo Z, ... ... Fu XD, et al. Capturing the interactome of newly transcribed RNA. Nature Methods. PMID 29431736 DOI: 10.1038/Nmeth.4595 |
0.344 |
|
| 2018 |
Chen L, Chen JY, Huang YJ, Gu Y, Qiu J, Qian H, Shao C, Zhang X, Hu J, Li H, He S, Zhou Y, Abdel-Wahab O, Zhang DE, Fu XD. The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations. Molecular Cell. 69: 412-425.e6. PMID 29395063 DOI: 10.1016/J.Molcel.2017.12.029 |
0.503 |
|
| 2017 |
Chen L, Chen JY, Zhang X, Gu Y, Xiao R, Shao C, Tang P, Qian H, Luo D, Li H, Zhou Y, Zhang DE, Fu XD. R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters. Molecular Cell. PMID 29104020 DOI: 10.1016/J.Molcel.2017.10.008 |
0.511 |
|
| 2017 |
Li X, Zhou B, Chen L, Gou LT, Li H, Fu XD. GRID-seq reveals the global RNA-chromatin interactome. Nature Biotechnology. PMID 28922346 DOI: 10.1038/Nbt.3968 |
0.367 |
|
| 2016 |
Yi J, Shen HF, Qiu JS, Huang MF, Zhang WJ, Ding JC, Zhu XY, Zhou Y, Fu XD, Liu W. JMJD6 and U2AF65 co-regulate alternative splicing in both JMJD6 enzymatic activity dependent and independent manner. Nucleic Acids Research. PMID 27899633 DOI: 10.1093/Nar/Gkw1144 |
0.346 |
|
| 2016 |
Wei C, Xiao R, Chen L, Cui H, Zhou Y, Xue Y, Hu J, Zhou B, Tsutsui T, Qiu J, Li H, Tang L, Fu XD. RBFox2 Binds Nascent RNA to Globally Regulate Polycomb Complex 2 Targeting in Mammalian Genomes. Molecular Cell. 62: 982. PMID 27315558 DOI: 10.1016/j.molcel.2016.06.003 |
0.329 |
|
| 2016 |
Wei C, Xiao R, Chen L, Cui H, Zhou Y, Xue Y, Hu J, Zhou B, Tsutsui T, Qiu J, Li H, Fu XD. RBFox2 Binds Nascent RNA to Globally Regulate Polycomb Complex 2 Targeting in Mammalian Genomes. Molecular Cell. PMID 27211866 DOI: 10.1016/J.Molcel.2016.04.013 |
0.426 |
|
| 2015 |
Yarosh CA, Tapescu I, Thompson MG, Qiu J, Mallory MJ, Fu XD, Lynch KW. TRAP150 interacts with the RNA-binding domain of PSF and antagonizes splicing of numerous PSF-target genes in T cells. Nucleic Acids Research. PMID 26261210 DOI: 10.1093/Nar/Gkv816 |
0.353 |
|
| 2015 |
Wu T, Fu XD. Genomic functions of U2AF in constitutive and regulated splicing. Rna Biology. 12: 479-85. PMID 25901584 DOI: 10.1080/15476286.2015.1020272 |
0.345 |
|
| 2014 |
Fu XD. Non-coding RNA: a new frontier in regulatory biology. National Science Review. 1: 190-204. PMID 25821635 DOI: 10.1093/Nsr/Nwu008 |
0.323 |
|
| 2014 |
Fong N, Kim H, Zhou Y, Ji X, Qiu J, Saldi T, Diener K, Jones K, Fu XD, Bentley DL. Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate. Genes & Development. 28: 2663-76. PMID 25452276 DOI: 10.1101/Gad.252106.114 |
0.313 |
|
| 2014 |
Shao C, Yang B, Wu T, Huang J, Tang P, Zhou Y, Zhou J, Qiu J, Jiang L, Li H, Chen G, Sun H, Zhang Y, Denise A, Zhang DE, ... Fu XD, et al. Mechanisms for U2AF to define 3' splice sites and regulate alternative splicing in the human genome. Nature Structural & Molecular Biology. 21: 997-1005. PMID 25326705 DOI: 10.1038/Nsmb.2906 |
0.332 |
|
| 2014 |
Guo R, Zheng L, Park JW, Lv R, Chen H, Jiao F, Xu W, Mu S, Wen H, Qiu J, Wang Z, Yang P, Wu F, Hui J, Fu X, et al. BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. Molecular Cell. 56: 298-310. PMID 25263594 DOI: 10.1016/J.Molcel.2014.08.022 |
0.322 |
|
| 2014 |
Fu XD, Ares M. Context-dependent control of alternative splicing by RNA-binding proteins. Nature Reviews. Genetics. 15: 689-701. PMID 25112293 DOI: 10.1038/Nrg3778 |
0.385 |
|
| 2013 |
Mo S, Ji X, Fu XD. Unique role of SRSF2 in transcription activation and diverse functions of the SR and hnRNP proteins in gene expression regulation. Transcription. 4: 251-9. PMID 24406341 |
0.4 |
|
| 2013 |
Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, ... ... Fu XD, et al. Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration. Proceedings of the National Academy of Sciences of the United States of America. 110: E4530-9. PMID 24170860 DOI: 10.1073/Pnas.1318835110 |
0.334 |
|
| 2013 |
Ji X, Zhou Y, Pandit S, Huang J, Li H, Lin CY, Xiao R, Burge CB, Fu XD. SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase. Cell. 153: 855-68. PMID 23663783 DOI: 10.1016/J.Cell.2013.04.028 |
0.364 |
|
| 2012 |
Tripathi V, Song DY, Zong X, Shevtsov SP, Hearn S, Fu XD, Dundr M, Prasanth KV. SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles. Molecular Biology of the Cell. 23: 3694-706. PMID 22855529 DOI: 10.1091/mbc.E12-03-0206 |
0.361 |
|
| 2012 |
Ji X, Fu XD. The mediator couples transcription and splicing. Molecular Cell. 45: 433-4. PMID 22365824 DOI: 10.1016/J.Molcel.2012.02.003 |
0.321 |
|
| 2012 |
Xiao R, Tang P, Yang B, Huang J, Zhou Y, Shao C, Li H, Sun H, Zhang Y, Fu XD. Nuclear matrix factor hnRNP U/SAF-A exerts a global control of alternative splicing by regulating U2 snRNP maturation. Molecular Cell. 45: 656-68. PMID 22325991 DOI: 10.1016/J.Molcel.2012.01.009 |
0.341 |
|
| 2011 |
Wang D, Garcia-Bassets I, Benner C, Li W, Su X, Zhou Y, Qiu J, Liu W, Kaikkonen MU, Ohgi KA, Glass CK, Rosenfeld MG, Fu XD. Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature. 474: 390-4. PMID 21572438 DOI: 10.1038/Nature10006 |
0.328 |
|
| 2011 |
Fox-Walsh K, Davis-Turak J, Zhou Y, Li H, Fu XD. A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation. Genomics. 98: 266-71. PMID 21515359 DOI: 10.1016/J.Ygeno.2011.04.003 |
0.34 |
|
| 2011 |
Han J, Xiong J, Wang D, Fu XD. Pre-mRNA splicing: where and when in the nucleus. Trends in Cell Biology. 21: 336-43. PMID 21514162 DOI: 10.1016/J.Tcb.2011.03.003 |
0.377 |
|
| 2011 |
Ahn EY, DeKelver RC, Lo MC, Nguyen TA, Matsuura S, Boyapati A, Pandit S, Fu XD, Zhang DE. SON controls cell-cycle progression by coordinated regulation of RNA splicing. Molecular Cell. 42: 185-98. PMID 21504830 DOI: 10.1016/j.molcel.2011.03.014 |
0.367 |
|
| 2011 |
Huang C, Xie MH, Liu W, Yang B, Yang F, Huang J, Huang J, Wu Q, Fu XD, Zhang Y. A structured RNA in hepatitis B virus post-transcriptional regulatory element represses alternative splicing in a sequence-independent and position-dependent manner. The Febs Journal. 278: 1533-46. PMID 21371260 DOI: 10.1111/J.1742-4658.2011.08077.X |
0.338 |
|
| 2011 |
Lovci MT, Li HR, Fu XD, Yeo GW. RNA-seq analysis of gene expression and alternative splicing by double-random priming strategy. Methods in Molecular Biology (Clifton, N.J.). 729: 247-55. PMID 21365495 DOI: 10.1007/978-1-61779-065-2_16 |
0.315 |
|
| 2009 |
Xue Y, Zhou Y, Wu T, Zhu T, Ji X, Kwon YS, Zhang C, Yeo G, Black DL, Sun H, Fu XD, Zhang Y. Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Molecular Cell. 36: 996-1006. PMID 20064465 DOI: 10.1016/J.Molcel.2009.12.003 |
0.402 |
|
| 2009 |
Zhong XY, Wang P, Han J, Rosenfeld MG, Fu XD. SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Molecular Cell. 35: 1-10. PMID 19595711 DOI: 10.1016/J.Molcel.2009.06.016 |
0.394 |
|
| 2009 |
Yeo GW, Coufal NG, Liang TY, Peng GE, Fu XD, Gage FH. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nature Structural & Molecular Biology. 16: 130-7. PMID 19136955 DOI: 10.1038/Nsmb.1545 |
0.368 |
|
| 2008 |
Lin S, Coutinho-Mansfield G, Wang D, Pandit S, Fu XD. The splicing factor SC35 has an active role in transcriptional elongation. Nature Structural & Molecular Biology. 15: 819-26. PMID 18641664 DOI: 10.1038/Nsmb.1461 |
0.376 |
|
| 2008 |
Pandit S, Wang D, Fu XD. Functional integration of transcriptional and RNA processing machineries. Current Opinion in Cell Biology. 20: 260-5. PMID 18436438 DOI: 10.1016/J.Ceb.2008.03.001 |
0.359 |
|
| 2007 |
Xiao R, Sun Y, Ding JH, Lin S, Rose DW, Rosenfeld MG, Fu XD, Li X. Splicing regulator SC35 is essential for genomic stability and cell proliferation during mammalian organogenesis. Molecular and Cellular Biology. 27: 5393-402. PMID 17526736 DOI: 10.1128/Mcb.00288-07 |
0.321 |
|
| Show low-probability matches. |