| Year |
Citation |
Score |
| 2024 |
Kloub L, Gosselin S, Graf J, Gogarten JP, Bansal MS. Investigating Additive and Replacing Horizontal Gene Transfers Using Phylogenies and Whole Genomes. Genome Biology and Evolution. 16. PMID 39163267 DOI: 10.1093/gbe/evae180 |
0.467 |
|
| 2024 |
Feng Y, Arsenault D, Louyakis AS, Altman-Price N, Gophna U, Papke RT, Gogarten JP. Using the pan-genomic framework for the discovery of genomic islands in the haloarchaeon . Mbio. e0040824. PMID 38619241 DOI: 10.1128/mbio.00408-24 |
0.834 |
|
| 2023 |
Turgeman-Grott I, Arsenault D, Yahav D, Feng Y, Miezner G, Naki D, Peri O, Papke RT, Gogarten JP, Gophna U. Neighboring inteins interfere with one another's homing capacity. Pnas Nexus. 2: pgad354. PMID 38024399 DOI: 10.1093/pnasnexus/pgad354 |
0.735 |
|
| 2023 |
Gosselin SP, Arsenault DR, Jennings CA, Gogarten JP. The Evolutionary History of a DNA Methylase Reveals Frequent Horizontal Transfer and Within-Gene Recombination. Genes. 14. PMID 36833214 DOI: 10.3390/genes14020288 |
0.388 |
|
| 2022 |
Gosselin S, Fullmer MS, Feng Y, Gogarten JP. Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support. Systematic Biology. 71: 396-409. PMID 34289044 DOI: 10.1093/sysbio/syab060 |
0.785 |
|
| 2021 |
Rangel LT, Soucy SM, Setubal JC, Gogarten JP, Fournier GP. An efficient, non-phylogenetic method for detecting genes sharing evolutionary signals in phylogenomic datasets. Genome Biology and Evolution. PMID 34390574 DOI: 10.1093/gbe/evab187 |
0.8 |
|
| 2021 |
Feng Y, Neri U, Gosselin S, Louyakis AS, Papke RT, Gophna U, Gogarten JP. The evolutionary origins of extreme halophilic Archaeal lineages. Genome Biology and Evolution. PMID 34255041 DOI: 10.1093/gbe/evab166 |
0.838 |
|
| 2019 |
Rangel LT, Marden J, Colston S, Setubal JC, Graf J, Gogarten JP. Identification and characterization of putative Aeromonas spp. T3SS effectors. Plos One. 14: e0214035. PMID 31163020 DOI: 10.1371/Journal.Pone.0214035 |
0.782 |
|
| 2019 |
Feng Y, Louyakis AS, Makkay AM, Guerrero RO, Papke RT, Gogarten JP. Complete Genome Sequence of Halorubrum ezzemoulense Strain Fb21. Microbiology Resource Announcements. 8. PMID 30938699 DOI: 10.1128/MRA.00096-19 |
0.808 |
|
| 2019 |
Fullmer MS, Ouellette M, Louyakis AS, Papke RT, Gogarten JP. The Patchy Distribution of Restriction⁻Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria. Genes. 10. PMID 30893937 DOI: 10.3390/Genes10030233 |
0.797 |
|
| 2016 |
Dick AA, Harlow TJ, Gogarten JP. Short branches lead to systematic artifacts when BLAST searches are used as surrogate for phylogenetic reconstruction. Molecular Phylogenetics and Evolution. 107: 338-344. PMID 27894995 DOI: 10.1016/j.ympev.2016.11.016 |
0.346 |
|
| 2016 |
Omer S, Harlow TJ, Gogarten JP. Does Sequence Conservation Provide Evidence for Biological Function? Trends in Microbiology. PMID 27773523 DOI: 10.1016/J.Tim.2016.09.010 |
0.4 |
|
| 2016 |
Gromek SM, Suria AM, Fullmer MS, Garcia JL, Gogarten JP, Nyholm SV, Balunas MJ. Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios. Frontiers in Microbiology. 7: 1342. PMID 27660622 DOI: 10.3389/Fmicb.2016.01342 |
0.402 |
|
| 2016 |
Naor A, Altman-Price N, Soucy SM, Green AG, Mitiagin Y, Turgeman-Grott I, Davidovich N, Gogarten JP, Gophna U. Impact of a homing intein on recombination frequency and organismal fitness. Proceedings of the National Academy of Sciences of the United States of America. PMID 27462108 DOI: 10.1073/Pnas.1606416113 |
0.311 |
|
| 2015 |
Fullmer MS, Soucy SM, Gogarten JP. The pan-genome as a shared genomic resource: mutual cheating, cooperation and the black queen hypothesis. Frontiers in Microbiology. 6: 728. PMID 26284032 DOI: 10.3389/Fmicb.2015.00728 |
0.52 |
|
| 2015 |
Soucy SM, Huang J, Gogarten JP. Horizontal gene transfer: building the web of life. Nature Reviews. Genetics. 16: 472-82. PMID 26184597 DOI: 10.1038/Nrg3962 |
0.421 |
|
| 2015 |
Fournier GP, Andam CP, Gogarten JP. Ancient horizontal gene transfer and the last common ancestors. Bmc Evolutionary Biology. 15: 70. PMID 25897759 DOI: 10.1186/S12862-015-0350-0 |
0.847 |
|
| 2015 |
Collins AJ, Fullmer MS, Gogarten JP, Nyholm SV. Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes. Frontiers in Microbiology. 6: 123. PMID 25755651 DOI: 10.3389/Fmicb.2015.00123 |
0.432 |
|
| 2014 |
Colston SM, Fullmer MS, Beka L, Lamy B, Gogarten JP, Graf J. Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case. Mbio. 5: e02136. PMID 25406383 DOI: 10.1128/Mbio.02136-14 |
0.383 |
|
| 2014 |
Soucy SM, Fullmer MS, Papke RT, Gogarten JP. Inteins as indicators of gene flow in the halobacteria. Frontiers in Microbiology. 5: 299. PMID 25018750 DOI: 10.3389/Fmicb.2014.00299 |
0.525 |
|
| 2014 |
Zhou C, Mao F, Yin Y, Huang J, Gogarten JP, Xu Y. AST: an automated sequence-sampling method for improving the taxonomic diversity of gene phylogenetic trees. Plos One. 9: e98844. PMID 24892935 DOI: 10.1371/Journal.Pone.0098844 |
0.513 |
|
| 2014 |
Ram Mohan N, Fullmer MS, Makkay AM, Wheeler R, Ventosa A, Naor A, Gogarten JP, Papke RT. Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations. Frontiers in Microbiology. 5: 143. PMID 24782838 DOI: 10.3389/fmicb.2014.00143 |
0.347 |
|
| 2014 |
Fullmer MS, Soucy SM, Swithers KS, Makkay AM, Wheeler R, Ventosa A, Gogarten JP, Papke RT. Population and genomic analysis of the genus Halorubrum. Frontiers in Microbiology. 5: 140. PMID 24782836 DOI: 10.3389/fmicb.2014.00140 |
0.787 |
|
| 2014 |
Lapierre P, Lasek-Nesselquist E, Gogarten JP. The impact of HGT on phylogenomic reconstruction methods. Briefings in Bioinformatics. 15: 79-90. PMID 22908214 DOI: 10.1093/Bib/Bbs050 |
0.504 |
|
| 2013 |
Butzin NC, Lapierre P, Green AG, Swithers KS, Gogarten JP, Noll KM. Reconstructed ancestral Myo-inositol-3-phosphate synthases indicate that ancestors of the Thermococcales and Thermotoga species were more thermophilic than their descendants. Plos One. 8: e84300. PMID 24391933 DOI: 10.1371/journal.pone.0084300 |
0.804 |
|
| 2013 |
Swithers KS, Soucy SM, Lasek-Nesselquist E, Lapierre P, Gogarten JP. Distribution and evolution of the mobile vma-1b intein. Molecular Biology and Evolution. 30: 2676-87. PMID 24048585 DOI: 10.1093/Molbev/Mst164 |
0.794 |
|
| 2013 |
Butzin NC, Secinaro MA, Swithers KS, Gogarten JP, Noll KM. Thermotoga lettingae can salvage cobinamide to synthesize vitamin B12. Applied and Environmental Microbiology. 79: 7006-12. PMID 24014541 DOI: 10.1128/AEM.01800-13 |
0.755 |
|
| 2013 |
Green AG, Swithers KS, Gogarten JF, Gogarten JP. Reconstruction of ancestral 16S rRNA reveals mutation bias in the evolution of optimal growth temperature in the Thermotogae phylum. Molecular Biology and Evolution. 30: 2463-74. PMID 23966548 DOI: 10.1093/Molbev/Mst145 |
0.758 |
|
| 2013 |
Lasek-Nesselquist E, Gogarten JP. The effects of model choice and mitigating bias on the ribosomal tree of life. Molecular Phylogenetics and Evolution. 69: 17-38. PMID 23707703 DOI: 10.1016/J.Ympev.2013.05.006 |
0.371 |
|
| 2013 |
Bansal MS, Banay G, Harlow TJ, Gogarten JP, Shamir R. Systematic inference of highways of horizontal gene transfer in prokaryotes. Bioinformatics (Oxford, England). 29: 571-9. PMID 23335015 DOI: 10.1093/Bioinformatics/Btt021 |
0.347 |
|
| 2013 |
Andam CP, Gogarten JP. Biased gene transfer contributes to maintaining the tree of life Lateral Gene Transfer in Evolution. 263-274. DOI: 10.1007/978-1-4614-7780-8-14 |
0.334 |
|
| 2012 |
Williams D, Gogarten JP, Papke RT. Quantifying homologous replacement of loci between haloarchaeal species. Genome Biology and Evolution. 4: 1223-44. PMID 23160063 DOI: 10.1093/gbe/evs098 |
0.459 |
|
| 2012 |
Swithers KS, Soucy SM, Gogarten JP. The role of reticulate evolution in creating innovation and complexity. International Journal of Evolutionary Biology. 2012: 418964. PMID 22844638 DOI: 10.1155/2012/418964 |
0.799 |
|
| 2012 |
Swithers KS, Petrus AK, Secinaro MA, Nesbø CL, Gogarten JP, Noll KM, Butzin NC. Vitamin B(12) synthesis and salvage pathways were acquired by horizontal gene transfer to the Thermotogales. Genome Biology and Evolution. 4: 730-9. PMID 22798452 DOI: 10.1093/Gbe/Evs057 |
0.787 |
|
| 2012 |
Petrus AK, Swithers KS, Ranjit C, Wu S, Brewer HM, Gogarten JP, Pasa-Tolic L, Noll KM. Genes for the major structural components of Thermotogales species' togas revealed by proteomic and evolutionary analyses of OmpA and OmpB homologs. Plos One. 7: e40236. PMID 22768259 DOI: 10.1371/Journal.Pone.0040236 |
0.813 |
|
| 2012 |
Andam CP, Harlow TJ, Papke RT, Gogarten JP. Ancient origin of the divergent forms of leucyl-tRNA synthetases in the Halobacteriales. Bmc Evolutionary Biology. 12: 85. PMID 22694720 DOI: 10.1186/1471-2148-12-85 |
0.468 |
|
| 2012 |
Mao F, Williams D, Zhaxybayeva O, Poptsova M, Lapierre P, Gogarten JP, Xu Y. Quartet decomposition server: a platform for analyzing phylogenetic trees. Bmc Bioinformatics. 13: 123. PMID 22676320 DOI: 10.1186/1471-2105-13-123 |
0.744 |
|
| 2012 |
Fournier GP, Andam CP, Alm EJ, Gogarten JP. Erratum to: Molecular Evolution of Aminoacyl tRNA Synthetase Proteins in the Early History of Life Origins of Life and Evolution of Biospheres. 42: 377-377. DOI: 10.1007/S11084-012-9294-1 |
0.812 |
|
| 2011 |
Fournier GP, Andam CP, Alm EJ, Gogarten JP. Molecular evolution of aminoacyl tRNA synthetase proteins in the early history of life. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 41: 621-32. PMID 22200905 DOI: 10.1007/S11084-011-9261-2 |
0.822 |
|
| 2011 |
Barzel A, Obolski U, Gogarten JP, Kupiec M, Hadany L. Home and away- the evolutionary dynamics of homing endonucleases. Bmc Evolutionary Biology. 11: 324. PMID 22054298 DOI: 10.1186/1471-2148-11-324 |
0.333 |
|
| 2011 |
Swithers KS, DiPippo JL, Bruce DC, Detter C, Tapia R, Han S, Saunders E, Goodwin LA, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Mikhailova N, Lykidis A, ... ... Gogarten JP, et al. Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores. Journal of Bacteriology. 193: 5869-70. PMID 21952543 DOI: 10.1128/Jb.05923-11 |
0.789 |
|
| 2011 |
Andam CP, Gogarten JP. Biased gene transfer and its implications for the concept of lineage. Biology Direct. 6: 47. PMID 21943000 DOI: 10.1186/1745-6150-6-47 |
0.415 |
|
| 2011 |
Williams D, Fournier GP, Lapierre P, Swithers KS, Green AG, Andam CP, Gogarten JP. A rooted net of life. Biology Direct. 6: 45. PMID 21936906 DOI: 10.1186/1745-6150-6-45 |
0.838 |
|
| 2011 |
Swithers KS, DiPippo JL, Bruce DC, Detter C, Tapia R, Han S, Goodwin LA, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Mikhailova N, Land ML, Nesbø CL, ... Gogarten JP, et al. Genome sequence of Kosmotoga olearia strain TBF 19.5.1, a thermophilic bacterium with a wide growth temperature range, isolated from the Troll B oil platform in the North Sea. Journal of Bacteriology. 193: 5566-7. PMID 21914881 DOI: 10.1128/Jb.05828-11 |
0.81 |
|
| 2011 |
Bansal MS, Banay G, Gogarten JP, Shamir R. Detecting highways of horizontal gene transfer. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1087-114. PMID 21899418 DOI: 10.1089/Cmb.2011.0066 |
0.335 |
|
| 2011 |
Swithers KS, Fournier GP, Green AG, Gogarten JP, Lapierre P. Reassessment of the lineage fusion hypothesis for the origin of double membrane bacteria. Plos One. 6: e23774. PMID 21876769 DOI: 10.1371/Journal.Pone.0023774 |
0.785 |
|
| 2011 |
Andam CP, Gogarten JP. Biased gene transfer in microbial evolution. Nature Reviews. Microbiology. 9: 543-55. PMID 21666709 DOI: 10.1038/nrmicro2593 |
0.398 |
|
| 2011 |
Andam CP, Fournier GP, Gogarten JP. Multilevel populations and the evolution of antibiotic resistance through horizontal gene transfer. Fems Microbiology Reviews. 35: 756-67. PMID 21521245 DOI: 10.1111/J.1574-6976.2011.00274.X |
0.828 |
|
| 2011 |
Silver AC, Williams D, Faucher J, Horneman AJ, Gogarten JP, Graf J. Complex evolutionary history of the Aeromonas veronii group revealed by host interaction and DNA sequence data. Plos One. 6: e16751. PMID 21359176 DOI: 10.1371/Journal.Pone.0016751 |
0.346 |
|
| 2011 |
Fournier GP, Dick AA, Williams D, Gogarten JP. Evolution of the Archaea: emerging views on origins and phylogeny. Research in Microbiology. 162: 92-8. PMID 21034818 DOI: 10.1016/J.Resmic.2010.09.016 |
0.812 |
|
| 2010 |
Andam CP, Williams D, Gogarten JP. Biased gene transfer mimics patterns created through shared ancestry. Proceedings of the National Academy of Sciences of the United States of America. 107: 10679-84. PMID 20495090 DOI: 10.1073/Pnas.1001418107 |
0.442 |
|
| 2010 |
Poptsova MS, Gogarten JP. Using comparative genome analysis to identify problems in annotated microbial genomes. Microbiology (Reading, England). 156: 1909-17. PMID 20430813 DOI: 10.1099/mic.0.033811-0 |
0.367 |
|
| 2010 |
Fournier GP, Neumann JE, Gogarten JP. Inferring the ancient history of the translation machinery and genetic code via recapitulation of ribosomal subunit assembly orders. Plos One. 5: e9437. PMID 20208990 DOI: 10.1371/Journal.Pone.0009437 |
0.778 |
|
| 2010 |
Fournier GP, Gogarten JP. Rooting the ribosomal tree of life. Molecular Biology and Evolution. 27: 1792-801. PMID 20194428 DOI: 10.1093/Molbev/Msq057 |
0.802 |
|
| 2009 |
Zhaxybayeva O, Doolittle WF, Papke RT, Gogarten JP. Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus. Genome Biology and Evolution. 1: 325-39. PMID 20333202 DOI: 10.1093/Gbe/Evp032 |
0.763 |
|
| 2009 |
Swithers KS, Senejani AG, Fournier GP, Gogarten JP. Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements. Bmc Evolutionary Biology. 9: 303. PMID 20043855 DOI: 10.1186/1471-2148-9-303 |
0.781 |
|
| 2009 |
Olendzenski L, Gogarten JP. Evolution of genes and organisms: the tree/web of life in light of horizontal gene transfer. Annals of the New York Academy of Sciences. 1178: 137-45. PMID 19845634 DOI: 10.1111/j.1749-6632.2009.04998.x |
0.427 |
|
| 2009 |
Bickhart DM, Gogarten JP, Lapierre P, Tisa LS, Normand P, Benson DR. Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia. Bmc Genomics. 10: 468. PMID 19821988 DOI: 10.1186/1471-2164-10-468 |
0.389 |
|
| 2009 |
Swithers KS, Gogarten JP, Fournier GP. Trees in the web of life. Journal of Biology. 8: 54. PMID 19664165 DOI: 10.1186/Jbiol160 |
0.811 |
|
| 2009 |
Fournier GP, Huang J, Gogarten JP. Horizontal gene transfer from extinct and extant lineages: biological innovation and the coral of life. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2229-39. PMID 19571243 DOI: 10.1098/Rstb.2009.0033 |
0.825 |
|
| 2009 |
Zhaxybayeva O, Swithers KS, Lapierre P, Fournier GP, Bickhart DM, DeBoy RT, Nelson KE, Nesbø CL, Doolittle WF, Gogarten JP, Noll KM. On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. Proceedings of the National Academy of Sciences of the United States of America. 106: 5865-70. PMID 19307556 DOI: 10.1073/Pnas.0901260106 |
0.837 |
|
| 2009 |
Huang J, Gogarten JP. Ancient gene transfer as a tool in phylogenetic reconstruction. Methods in Molecular Biology (Clifton, N.J.). 532: 127-39. PMID 19271182 DOI: 10.1007/978-1-60327-853-9_7 |
0.491 |
|
| 2009 |
Olendzenski L, Gogarten JP. Gene transfer: who benefits? Methods in Molecular Biology (Clifton, N.J.). 532: 3-9. PMID 19271176 DOI: 10.1007/978-1-60327-853-9_1 |
0.485 |
|
| 2009 |
Lapierre P, Gogarten JP. Estimating the size of the bacterial pan-genome. Trends in Genetics : Tig. 25: 107-10. PMID 19168257 DOI: 10.1016/j.tig.2008.12.004 |
0.387 |
|
| 2008 |
Huang J, Gogarten JP. Concerted gene recruitment in early plant evolution. Genome Biology. 9: R109. PMID 18611267 DOI: 10.1186/gb-2008-9-7-r109 |
0.379 |
|
| 2008 |
Hamel L, Nahar N, Poptsova MS, Zhaxybayeva O, Gogarten JP. Unsupervised learning in detection of gene transfer. Journal of Biomedicine & Biotechnology. 2008: 472719. PMID 18509479 DOI: 10.1155/2008/472719 |
0.763 |
|
| 2008 |
Noll KM, Lapierre P, Gogarten JP, Nanavati DM. Evolution of mal ABC transporter operons in the Thermococcales and Thermotogales. Bmc Evolutionary Biology. 8: 7. PMID 18197971 DOI: 10.1186/1471-2148-8-7 |
0.443 |
|
| 2008 |
Fournier GP, Gogarten JP. Evolution of acetoclastic methanogenesis in Methanosarcina via horizontal gene transfer from cellulolytic Clostridia. Journal of Bacteriology. 190: 1124-7. PMID 18055595 DOI: 10.1128/Jb.01382-07 |
0.811 |
|
| 2008 |
Gogarten JP, Fournier G, Zhaxybayeva O. Gene transfer and the reconstruction of life's early history from genomic data Space Science Reviews. 135: 115-131. DOI: 10.1007/978-0-387-77516-6_10 |
0.837 |
|
| 2007 |
Fournier GP, Gogarten JP. Signature of a primitive genetic code in ancient protein lineages. Journal of Molecular Evolution. 65: 425-36. PMID 17922074 DOI: 10.1007/S00239-007-9024-X |
0.783 |
|
| 2007 |
Zhaxybayeva O, Gogarten JP, Doolittle WF. A hyperconserved protein in Prochlorococcus and marine Synechococcus. Fems Microbiology Letters. 274: 30-4. PMID 17573933 DOI: 10.1111/J.1574-6968.2007.00806.X |
0.756 |
|
| 2007 |
Huang J, Gogarten JP. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biology. 8: R99. PMID 17547748 DOI: 10.1186/Gb-2007-8-6-R99 |
0.461 |
|
| 2007 |
Poptsova MS, Gogarten JP. BranchClust: a phylogenetic algorithm for selecting gene families. Bmc Bioinformatics. 8: 120. PMID 17425803 DOI: 10.1186/1471-2105-8-120 |
0.359 |
|
| 2007 |
Poptsova MS, Gogarten JP. The power of phylogenetic approaches to detect horizontally transferred genes. Bmc Evolutionary Biology. 7: 45. PMID 17376230 DOI: 10.1186/1471-2148-7-45 |
0.335 |
|
| 2007 |
Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, Bickhart DM, Choisne N, Couloux A, Cournoyer B, Cruveiller S, Daubin V, Demange N, et al. Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Research. 17: 7-15. PMID 17151343 DOI: 10.1101/Gr.5798407 |
0.366 |
|
| 2007 |
Hamel L, Nahar N, Poptsova MS, Zhaxybayeva O, Gogarten JP. Unsupervised learning in spectral genome analysis Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, Fbit 2007. 317-321. DOI: 10.1109/FBIT.2007.81 |
0.621 |
|
| 2006 |
Zhaxybayeva O, Gogarten JP, Charlebois RL, Doolittle WF, Papke RT. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome Research. 16: 1099-108. PMID 16899658 DOI: 10.1101/Gr.5322306 |
0.792 |
|
| 2006 |
Huang J, Gogarten JP. Ancient horizontal gene transfer can benefit phylogenetic reconstruction. Trends in Genetics : Tig. 22: 361-6. PMID 16730850 DOI: 10.1016/J.Tig.2006.05.004 |
0.472 |
|
| 2005 |
Zhaxybayeva O, Lapierre P, Gogarten JP. Ancient gene duplications and the root(s) of the tree of life. Protoplasma. 227: 53-64. PMID 16389494 DOI: 10.1007/S00709-005-0135-1 |
0.75 |
|
| 2005 |
Morandi A, Zhaxybayeva O, Gogarten JP, Graf J. Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains. Journal of Bacteriology. 187: 6561-4. PMID 16159790 DOI: 10.1128/Jb.187.18.6561-6564.2005 |
0.679 |
|
| 2005 |
Gogarten JP, Townsend JP. Horizontal gene transfer, genome innovation and evolution. Nature Reviews. Microbiology. 3: 679-87. PMID 16138096 DOI: 10.1038/Nrmicro1204 |
0.451 |
|
| 2005 |
Huang J, Xu Y, Gogarten JP. The presence of a haloarchaeal type tyrosyl-tRNA synthetase marks the opisthokonts as monophyletic. Molecular Biology and Evolution. 22: 2142-6. PMID 16049196 DOI: 10.1093/Molbev/Msi221 |
0.495 |
|
| 2005 |
Hamel L, Zhaxybayeva O, Gogarten JP. PentaPlot: a software tool for the illustration of genome mosaicism. Bmc Bioinformatics. 6: 139. PMID 15938752 DOI: 10.1186/1471-2105-6-139 |
0.67 |
|
| 2005 |
Sollod BL, Wilson D, Zhaxybayeva O, Gogarten JP, Drinkwater R, King GF. Were arachnids the first to use combinatorial peptide libraries? Peptides. 26: 131-9. PMID 15626513 DOI: 10.1016/J.Peptides.2004.07.016 |
0.611 |
|
| 2004 |
Zhaxybayeva O, Lapierre P, Gogarten JP. Genome mosaicism and organismal lineages. Trends in Genetics : Tig. 20: 254-60. PMID 15109780 DOI: 10.1016/J.Tig.2004.03.009 |
0.743 |
|
| 2004 |
Zhaxybayeva O, Gogarten JP. Cladogenesis, coalescence and the evolution of the three domains of life. Trends in Genetics : Tig. 20: 182-7. PMID 15041172 DOI: 10.1016/J.Tig.2004.02.004 |
0.691 |
|
| 2004 |
Zhaxybayeva O, Hamel L, Raymond J, Gogarten JP. Visualization of the phylogenetic content of five genomes using dekapentagonal maps. Genome Biology. 5: R20. PMID 15003123 DOI: 10.1186/Gb-2004-5-3-R20 |
0.715 |
|
| 2003 |
Zhaxybayeva O, Gogarten JP. Spliceosomal introns: new insights into their evolution. Current Biology : Cb. 13: R764-6. PMID 14521854 DOI: 10.1016/J.Cub.2003.09.017 |
0.667 |
|
| 2003 |
Zhaxybayeva O, Gogarten JP. An improved probability mapping approach to assess genome mosaicism. Bmc Genomics. 4: 37. PMID 12974984 DOI: 10.1186/1471-2164-4-37 |
0.697 |
|
| 2003 |
Raymond J, Zhaxybayeva O, Gogarten JP, Blankenship RE. Evolution of photosynthetic prokaryotes: a maximum-likelihood mapping approach. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 358: 223-30. PMID 12594930 DOI: 10.1098/Rstb.2002.1181 |
0.751 |
|
| 2003 |
Gogarten JP. Gene transfer: gene swapping craze reaches eukaryotes. Current Biology : Cb. 13: R53-4. PMID 12546803 DOI: 10.1016/S0960-9822(02)01426-4 |
0.341 |
|
| 2002 |
Raymond J, Zhaxybayeva O, Gogarten JP, Gerdes SY, Blankenship RE. Whole-genome analysis of photosynthetic prokaryotes. Science (New York, N.Y.). 298: 1616-20. PMID 12446909 DOI: 10.1126/Science.1075558 |
0.744 |
|
| 2002 |
Gogarten JP, Doolittle WF, Lawrence JG. Prokaryotic evolution in light of gene transfer. Molecular Biology and Evolution. 19: 2226-38. PMID 12446813 DOI: 10.1093/Oxfordjournals.Molbev.A004046 |
0.632 |
|
| 2002 |
Gogarten JP, Senejani AG, Zhaxybayeva O, Olendzenski L, Hilario E. Inteins: structure, function, and evolution. Annual Review of Microbiology. 56: 263-87. PMID 12142479 DOI: 10.1146/Annurev.Micro.56.012302.160741 |
0.667 |
|
| 2002 |
Magnotta SM, Gogarten JP. Multi site polyadenylation and transcriptional response to stress of a vacuolar type H+-ATPase subunit A gene in Arabidopsis thaliana. Bmc Plant Biology. 2: 3. PMID 11985780 DOI: 10.1186/1471-2229-2-3 |
0.352 |
|
| 2002 |
Zhaxybayeva O, Gogarten JP. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. Bmc Genomics. 3: 4. PMID 11918828 DOI: 10.1186/1471-2164-3-4 |
0.74 |
|
| 2002 |
Zhaxybayeva O, Gogarten JP. Boostrap, Bayesian probability and maximum likelihood mapping: Exploring new tools for comparative genome analyses Bmc Genomics. 3. DOI: 10.1186/1471-2164-3-4 |
0.641 |
|
| 2000 |
Olendzenski L, Liu L, Zhaxybayeva O, Murphey R, Shin DG, Gogarten JP. Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches. Journal of Molecular Evolution. 51: 587-99. PMID 11116332 DOI: 10.1007/s002390010122 |
0.736 |
|
| 1999 |
Gogarten JP, Olendzenski L. Orthologs, paralogs and genome comparisons. Current Opinion in Genetics & Development. 9: 630-6. PMID 10607614 DOI: 10.1016/S0959-437X(99)00029-5 |
0.459 |
|
| 1999 |
Gogarten JP, Murphey RD, Olendzenski L. Horizontal gene transfer: pitfalls and promises. The Biological Bulletin. 196: 359-61; discussion 3. PMID 10390834 DOI: 10.2307/1542970 |
0.53 |
|
| 1998 |
Hilario E, Gogarten JP. The prokaryote-to-eukaryote transition reflected in the evolution of the V/F/A-ATPase catalytic and proteolipid subunits. Journal of Molecular Evolution. 46: 703-15. PMID 9608053 DOI: 10.1007/Pl00006351 |
0.323 |
|
| 1996 |
Gogarten JP, Hilario E, Olendzenski L. Gene duplications and horizontal gene transfer during early evolution Origins of Life and Evolution of the Biosphere. 26: 284-285. DOI: 10.1007/BF02459760 |
0.355 |
|
| 1995 |
Gogarten JP. The early evolution of cellular life. Trends in Ecology & Evolution. 10: 147-51. PMID 21236984 |
0.361 |
|
| 1995 |
Hilario E, Gogarten JP. The V-ATPase A subunit gene (vma-1) from Giardia lamblia. Biochimica Et Biophysica Acta. 1238: 94-8. PMID 7654757 DOI: 10.1016/0005-2736(95)00130-U |
0.398 |
|
| 1993 |
Starke T, Gogarten JP. A conserved intron in the V-ATPase A subunit genes of plants and algae. Febs Letters. 315: 252-8. PMID 8422915 DOI: 10.1016/0014-5793(93)81174-X |
0.408 |
|
| 1993 |
Hilario E, Gogarten JP. Horizontal transfer of ATPase genes--the tree of life becomes a net of life. Bio Systems. 31: 111-9. PMID 8155843 DOI: 10.1016/0303-2647(93)90038-E |
0.46 |
|
| 1992 |
Gogarten JP, Taiz L. Evolution of proton pumping ATPases: Rooting the tree of life. Photosynthesis Research. 33: 137-46. PMID 24408574 DOI: 10.1007/Bf00039176 |
0.67 |
|
| 1992 |
Gogarten JP, Starke T, Kibak H, Fishman J, Taiz L. Evolution and isoforms of V-ATPase subunits. The Journal of Experimental Biology. 172: 137-47. PMID 1491221 |
0.64 |
|
| 1992 |
Kibak H, Taiz L, Starke T, Bernasconi P, Gogarten JP. Evolution of structure and function of V-ATPases. Journal of Bioenergetics and Biomembranes. 24: 415-24. PMID 1400286 DOI: 10.1007/Bf00762534 |
0.671 |
|
| 1992 |
Gogarten JP, Fichmann J, Braun Y, Morgan L, Styles P, Taiz SL, DeLapp K, Taiz L. The use of antisense mRNA to inhibit the tonoplast H+ ATPase in carrot. The Plant Cell. 4: 851-64. PMID 1392599 DOI: 10.1105/Tpc.4.7.851 |
0.556 |
|
| 1991 |
Starke T, Linkkila TP, Gogarten JP. Two separate genes encode the catalytic 70 kDa V-ATPase subunit in Psilotum and Equisetum. Zeitschrift FüR Naturforschung. C, Journal of Biosciences. 46: 613-20. PMID 1837986 DOI: 10.1515/Znc-1991-7-818 |
0.5 |
|
| 1989 |
Gogarten JP, Bentrup FW. Substrate specifity of the hexose carrier in the plasmalemma of Chenopodium suspension cells probed by transmembrane exchange diffusion. Planta. 178: 52-60. PMID 24212549 DOI: 10.1007/Bf00392526 |
0.539 |
|
| 1989 |
Gogarten JP, Rausch T, Bernasconi P, Kibak H, Taiz L. Molecular evolution of H+-ATPases. I. Methanococcus and Sulfolobus are monophyletic with respect to eukaryotes and Eubacteria. Zeitschrift Fã¼R Naturforschung. C, Journal of Biosciences. 44: 641-50. PMID 2528356 DOI: 10.1515/Znc-1989-7-816 |
0.645 |
|
| 1989 |
Gogarten JP, Kibak H, Dittrich P, Taiz L, Bowman EJ, Bowman BJ, Manolson MF, Poole RJ, Date T, Oshima T. Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 86: 6661-5. PMID 2528146 DOI: 10.1073/Pnas.86.17.6661 |
0.621 |
|
| 1989 |
Bernasconi P, Rausch T, Gogarten JP, Taiz L. The H+ ATPase regulatory subunit of Methanococcus thermolithotrophicus: amplification of an 800 bp fragment by polymerase chain reaction. Febs Letters. 251: 132-6. PMID 2526753 DOI: 10.1016/0014-5793(89)81442-5 |
0.627 |
|
| 1989 |
Gogarten JP, Bentrup FW. The electrogenic proton/hexose carrier in the plasmalemma of Chenopodium rubrum suspension cells: effects of Δc, ΔpH and Δψ on hexose exchange diffusion Bba - Biomembranes. 978: 43-50. DOI: 10.1016/0005-2736(89)90496-3 |
0.558 |
|
| 1988 |
Gogarten-Boekels M, Gogarten JP, Bentrup FW. Sugar nucleotides dissipate ATP-generated transmembrane pH gradient in Golgi vesicles from suspension-cell protoplasts ofChenopodium rubrum L. Planta. 174: 349-57. PMID 24221516 DOI: 10.1007/Bf00959520 |
0.541 |
|
| 1988 |
Zimniak L, Dittrich P, Gogarten JP, Kibak H, Taiz L. The cDNA sequence of the 69-kDa subunit of the carrot vacuolar H+-ATPase. Homology to the beta-chain of F0F1-ATPases. The Journal of Biological Chemistry. 263: 9102-12. PMID 2897965 |
0.606 |
|
| 1986 |
Bentrup FW, Gogarten-Boekels M, Hoffmann B, Gogarten JP, Baumann C. ATP-dependent acidification and tonoplast hyperpolarization in isolated vacuoles from green suspension cells of Chenopodium rubrum L. Proceedings of the National Academy of Sciences of the United States of America. 83: 2431-3. PMID 16593685 |
0.554 |
|
| 1985 |
Gogarten-Boekels M, Gogarten JP, Bentrup FW. Kinetics and Specificity of ATP-dependent Proton Translocation Measured with Acridine Orange in Microsomal Fractions from Green Suspension Cells of Chenopodium rubrum L. Journal of Plant Physiology. 118: 309-25. PMID 23196073 DOI: 10.1016/S0176-1617(85)80190-5 |
0.558 |
|
| 1985 |
Bentrup FW, Hoffmann B, Gogarten-Boekels M, Gogarten J, Baumann C. A Patch Clamp Study of Tonoplast Electrical Properties in Vacuoles Isolated from Chenopodium Rubrum Suspension Cells Zeitschrift Fur Naturforschung - Section C Journal of Biosciences. 40: 886-890. DOI: 10.1515/Znc-1985-11-1223 |
0.537 |
|
| 1983 |
Felle H, Gogarten JP, Bentrup FW. Phlorizin inhibits hexose transport across the plasmalemma of Riccia fluitans. Planta. 157: 267-70. PMID 24264157 DOI: 10.1007/Bf00405192 |
0.532 |
|
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