| Year |
Citation |
Score |
| 2020 |
Payne M, Kaur S, Wang Q, Hennessy D, Luo L, Octavia S, Tanaka MM, Sintchenko V, Lan R. Multilevel genome typing: genomics-guided scalable resolution typing of microbial pathogens. Euro Surveillance : Bulletin Europeen Sur Les Maladies Transmissibles = European Communicable Disease Bulletin. 25. PMID 32458794 DOI: 10.2807/1560-7917.Es.2020.25.20.1900519 |
0.357 |
|
| 2020 |
Tanaka MM, Godfrey-Smith P, Kerr B. The Dual Landscape Model of Adaptation and Niche Construction Philosophy of Science. 87: 478-498. DOI: 10.1086/708692 |
0.559 |
|
| 2019 |
Aandahl RZ, Bhatia S, Vaudagnotto N, Street AG, Francis AR, Tanaka MM. MERCAT: Visualising molecular epidemiology data combining genetic markers and drug resistance profiles. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 77: 104043. PMID 31683007 DOI: 10.1016/J.Meegid.2019.104043 |
0.356 |
|
| 2019 |
Russo AG, Kelly AG, Enosi Tuipulotu D, Tanaka MM, White PA. Novel insights into endogenous RNA viral elements in and other arbovirus vector genomes. Virus Evolution. 5: vez010. PMID 31249694 DOI: 10.1093/Ve/Vez010 |
0.322 |
|
| 2018 |
Chisholm RH, Connelly BD, Kerr B, Tanaka MM. The Role of Pleiotropy in the Evolutionary Maintenance of Positive Niche Construction. The American Naturalist. 192: 35-48. PMID 29897798 DOI: 10.1086/697471 |
0.566 |
|
| 2017 |
Pečerska J, Wood J, Tanaka MM, Stadler T. Mathematical Models for the Epidemiology and Evolution of Mycobacterium tuberculosis. Advances in Experimental Medicine and Biology. 1019: 281-307. PMID 29116641 DOI: 10.1007/978-3-319-64371-7_15 |
0.346 |
|
| 2017 |
Fu S, Hiley L, Octavia S, Tanaka MM, Sintchenko V, Lan R. Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles. Scientific Reports. 7: 9733. PMID 28851865 DOI: 10.1038/S41598-017-06079-1 |
0.343 |
|
| 2017 |
Eden JS, Chisholm RH, Bull RA, White PA, Holmes EC, Tanaka MM. Persistent infections in immunocompromised hosts are rarely sources of new pathogen variants. Virus Evolution. 3: vex018. PMID 28775894 DOI: 10.1093/Ve/Vex018 |
0.353 |
|
| 2017 |
Serdoz S, Egri-Nagy A, Sumner J, Holland BR, Jarvis PD, Tanaka MM, Francis AR. Maximum likelihood estimates of pairwise rearrangement distances. Journal of Theoretical Biology. PMID 28435014 DOI: 10.1016/J.Jtbi.2017.04.015 |
0.321 |
|
| 2017 |
Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R. Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 28279807 DOI: 10.1016/J.Meegid.2017.03.004 |
0.345 |
|
| 2016 |
Fu S, Octavia S, Wang Q, Tanaka MM, Tay CY, Sintchenko V, Lan R. Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium. Frontiers in Microbiology. 7: 2002. PMID 28082952 DOI: 10.3389/Fmicb.2016.02002 |
0.351 |
|
| 2016 |
Chisholm RH, Trauer JM, Curnoe D, Tanaka MM. Controlled fire use in early humans might have triggered the evolutionary emergence of tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27457933 DOI: 10.1073/Pnas.1603224113 |
0.334 |
|
| 2016 |
Chisholm RH, Tanaka MM. The emergence of latent infection in the early evolution of Mycobacterium tuberculosis. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27194699 DOI: 10.1098/Rspb.2016.0499 |
0.338 |
|
| 2015 |
Peck KM, Chan CH, Tanaka MM. Connecting within-host dynamics to the rate of viral molecular evolution. Virus Evolution. 1: vev013. PMID 27774285 DOI: 10.1093/Ve/Vev013 |
0.346 |
|
| 2015 |
Chan CH, Sanders LP, Tanaka MM. Modelling the role of immunity in reversion of viral antigenic sites. Journal of Theoretical Biology. PMID 26723535 DOI: 10.1016/J.Jtbi.2015.12.008 |
0.33 |
|
| 2015 |
Wu Y, Aandahl RZ, Tanaka MM. Dynamics of bacterial insertion sequences: can transposition bursts help the elements persist? Bmc Evolutionary Biology. 15: 288. PMID 26690348 DOI: 10.1186/S12862-015-0560-5 |
0.365 |
|
| 2015 |
Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R. Genomic variability of serial human isolates of Salmonella enterica serovar Typhimurium associated with prolonged carriage. Journal of Clinical Microbiology. PMID 26311853 DOI: 10.1128/Jcm.01733-15 |
0.367 |
|
| 2015 |
Fu S, Octavia S, Tanaka MM, Sintchenko V, Lan R. Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing. Journal of Clinical Microbiology. 53: 2530-8. PMID 26019201 DOI: 10.1128/Jcm.03407-14 |
0.327 |
|
| 2015 |
Octavia S, Wang Q, Tanaka MM, Kaur S, Sintchenko V, Lan R. Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak. Journal of Clinical Microbiology. 53: 1063-71. PMID 25609719 DOI: 10.1128/Jcm.03235-14 |
0.376 |
|
| 2014 |
Tanaka MM, Althouse BM, Bergstrom CT. Timing of antimicrobial use influences the evolution of antimicrobial resistance during disease epidemics. Evolution, Medicine, and Public Health. 2014: 150-61. PMID 25376480 DOI: 10.1093/Emph/Eou027 |
0.579 |
|
| 2014 |
Hamblin SR, White PA, Tanaka MM. Viral niche construction alters hosts and ecosystems at multiple scales. Trends in Ecology & Evolution. 29: 594-9. PMID 25237032 DOI: 10.1016/J.Tree.2014.08.005 |
0.302 |
|
| 2014 |
Eden JS, Hewitt J, Lim KL, Boni MF, Merif J, Greening G, Ratcliff RM, Holmes EC, Tanaka MM, Rawlinson WD, White PA. The emergence and evolution of the novel epidemic norovirus GII.4 variant Sydney 2012. Virology. 450: 106-13. PMID 24503072 DOI: 10.1016/J.Virol.2013.12.005 |
0.597 |
|
| 2014 |
Aandahl RZ, Stadler T, Sisson SA, Tanaka MM. Exact vs. approximate computation: reconciling different estimates of Mycobacterium tuberculosis epidemiological parameters. Genetics. 196: 1227-30. PMID 24496011 DOI: 10.1534/Genetics.113.158808 |
0.317 |
|
| 2014 |
Wu Y, Saddler CA, Valckenborgh F, Tanaka MM. Dynamics of evolutionary rescue in changing environments and the emergence of antibiotic resistance. Journal of Theoretical Biology. 340: 222-31. PMID 24076261 DOI: 10.1016/J.Jtbi.2013.09.026 |
0.332 |
|
| 2014 |
Egri-Nagy A, Gebhardt V, Tanaka MM, Francis AR. Group-theoretic models of the inversion process in bacterial genomes. Journal of Mathematical Biology. 69: 243-65. PMID 23793228 DOI: 10.1007/S00285-013-0702-6 |
0.306 |
|
| 2013 |
Chan CH, Hamblin S, Tanaka MM. The effects of linkage on comparative estimators of selection. Bmc Evolutionary Biology. 13: 244. PMID 24199711 DOI: 10.1186/1471-2148-13-244 |
0.305 |
|
| 2013 |
Eden JS, Tanaka MM, Boni MF, Rawlinson WD, White PA. Recombination within the pandemic norovirus GII.4 lineage. Journal of Virology. 87: 6270-82. PMID 23536665 DOI: 10.1128/Jvi.03464-12 |
0.608 |
|
| 2013 |
Regoes RR, Hamblin S, Tanaka MM. Viral mutation rates: modelling the roles of within-host viral dynamics and the trade-off between replication fidelity and speed. Proceedings. Biological Sciences / the Royal Society. 280: 20122047. PMID 23135674 DOI: 10.1098/Rspb.2012.2047 |
0.343 |
|
| 2012 |
Aandahl RZ, Reyes JF, Sisson SA, Tanaka MM. A model-based Bayesian estimation of the rate of evolution of VNTR loci in Mycobacterium tuberculosis. Plos Computational Biology. 8: e1002573. PMID 22761563 DOI: 10.1371/Journal.Pcbi.1002573 |
0.369 |
|
| 2012 |
Francis AR, Tanaka MM. Evolution of variation in presence and absence of genes in bacterial pathways. Bmc Evolutionary Biology. 12: 55. PMID 22520826 DOI: 10.1186/1471-2148-12-55 |
0.303 |
|
| 2012 |
Reyes JF, Chan CH, Tanaka MM. Impact of homoplasy on variable numbers of tandem repeats and spoligotypes in Mycobacterium tuberculosis. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 811-8. PMID 21683165 DOI: 10.1016/J.Meegid.2011.05.018 |
0.376 |
|
| 2011 |
Tanaka MM, Valckenborgh F. Escaping an evolutionary lobster trap: drug resistance and compensatory mutation in a fluctuating environment. Evolution; International Journal of Organic Evolution. 65: 1376-87. PMID 21521192 DOI: 10.1111/J.1558-5646.2011.01223.X |
0.324 |
|
| 2011 |
Ch'ng SL, Octavia S, Xia Q, Duong A, Tanaka MM, Fukushima H, Lan R. Population structure and evolution of pathogenicity of Yersinia pseudotuberculosis. Applied and Environmental Microbiology. 77: 768-75. PMID 21131531 DOI: 10.1128/Aem.01993-10 |
0.325 |
|
| 2011 |
Tanaka MM, Reyes JF. VNTR mutation in Mycobacterium tuberculosis: Lower rates for less variable loci Infection, Genetics and Evolution. 11: 1192. DOI: 10.1016/J.Meegid.2011.03.013 |
0.301 |
|
| 2010 |
McLean AK, Luciani F, Tanaka MM. Trade-offs in resource allocation in the intracellular life-cycle of hepatitis C virus. Journal of Theoretical Biology. 267: 565-72. PMID 20883700 DOI: 10.1016/J.Jtbi.2010.09.031 |
0.307 |
|
| 2010 |
Reyes JF, Tanaka MM. Mutation rates of spoligotypes and variable numbers of tandem repeat loci in Mycobacterium tuberculosis. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 10: 1046-51. PMID 20619357 DOI: 10.1016/J.Meegid.2010.06.016 |
0.367 |
|
| 2009 |
Luciani F, Sisson SA, Jiang H, Francis AR, Tanaka MM. The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 106: 14711-5. PMID 19706556 DOI: 10.1073/Pnas.0902437106 |
0.313 |
|
| 2008 |
Reyes JF, Francis AR, Tanaka MM. Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes. Bmc Bioinformatics. 9: 496. PMID 19036166 DOI: 10.1186/1471-2105-9-496 |
0.358 |
|
| 2008 |
Tang C, Reyes JF, Luciani F, Francis AR, Tanaka MM. spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex. Bioinformatics (Oxford, England). 24: 2414-5. PMID 18710872 DOI: 10.1093/Bioinformatics/Btn434 |
0.314 |
|
| 2008 |
Luciani F, Francis AR, Tanaka MM. Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 8: 182-90. PMID 18243064 DOI: 10.1016/J.Meegid.2007.12.004 |
0.339 |
|
| 2007 |
Zaghloul L, Tang C, Chin HY, Bek EJ, Lan R, Tanaka MM. The distribution of insertion sequences in the genome of Shigella flexneri strain 2457T. Fems Microbiology Letters. 277: 197-204. PMID 18031340 DOI: 10.1111/J.1574-6968.2007.00957.X |
0.332 |
|
| 2006 |
Tanaka MM, Francis AR. Detecting emerging strains of tuberculosis by using spoligotypes. Proceedings of the National Academy of Sciences of the United States of America. 103: 15266-71. PMID 17015836 DOI: 10.1073/Pnas.0603130103 |
0.334 |
|
| 2006 |
Tanaka MM, Phong R, Francis AR. An evaluation of indices for quantifying tuberculosis transmission using genotypes of pathogen isolates. Bmc Infectious Diseases. 6: 92. PMID 16756684 DOI: 10.1186/1471-2334-6-92 |
0.357 |
|
| 2006 |
Tanaka MM, Francis AR, Luciani F, Sisson SA. Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data. Genetics. 173: 1511-20. PMID 16624908 DOI: 10.1534/Genetics.106.055574 |
0.357 |
|
| 2005 |
Bull RA, Hansman GS, Clancy LE, Tanaka MM, Rawlinson WD, White PA. Norovirus recombination in ORF1/ORF2 overlap. Emerging Infectious Diseases. 11: 1079-85. PMID 16022784 DOI: 10.3201/Eid1107.041273 |
0.322 |
|
| 2005 |
Regoes RR, Crotty S, Antia R, Tanaka MM. Optimal replication of poliovirus within cells. The American Naturalist. 165: 364-73. PMID 15729666 DOI: 10.1086/428295 |
0.304 |
|
| 2005 |
Tanaka MM, Francis AR. Methods of quantifying and visualising outbreaks of tuberculosis using genotypic information. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 5: 35-43. PMID 15567137 DOI: 10.1016/J.Meegid.2004.06.001 |
0.332 |
|
| 2004 |
Tanaka MM. Evidence for positive selection on Mycobacterium tuberculosis within patients. Bmc Evolutionary Biology. 4: 31. PMID 15355550 DOI: 10.1186/1471-2148-4-31 |
0.331 |
|
| 2004 |
Tanaka MM, Rosenberg NA, Small PM. The control of copy number of IS6110 in Mycobacterium tuberculosis. Molecular Biology and Evolution. 21: 2195-201. PMID 15317877 DOI: 10.1093/Molbev/Msh234 |
0.575 |
|
| 2003 |
Tanaka MM, Bergstrom CT, Levin BR. The evolution of mutator genes in bacterial populations: the roles of environmental change and timing. Genetics. 164: 843-54. PMID 12871898 |
0.55 |
|
| 2003 |
Rosenberg NA, Tsolaki AG, Tanaka MM. Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis. Theoretical Population Biology. 63: 347-63. PMID 12742178 DOI: 10.1016/S0040-5809(03)00010-8 |
0.539 |
|
| 2002 |
Tanaka MM, Kumm J, Feldman MW. Coevolution of pathogens and cultural practices: a new look at behavioral heterogeneity in epidemics. Theoretical Population Biology. 62: 111-9. PMID 12167351 DOI: 10.1006/Tpbi.2002.1585 |
0.457 |
|
| 2001 |
Tanaka MM, Rosenberg NA. Optimal estimation of transposition rates of insertion sequences for molecular epidemiology. Statistics in Medicine. 20: 2409-20. PMID 11512131 DOI: 10.1002/Sim.910 |
0.559 |
|
| 2000 |
Tanaka MM, Small PM, Salamon H, Feldman MW. The dynamics of repeated elements: applications to the epidemiology of tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 97: 3532-7. PMID 10716736 DOI: 10.1073/Pnas.97.7.3532 |
0.507 |
|
| 1999 |
Field D, Magnasco MO, Moxon ER, Metzgar D, Tanaka MM, Wills C, Thaler DS. Contingency loci, mutator alleles, and their interactions. Synergistic strategies for microbial evolution and adaptation in pathogenesis. Annals of the New York Academy of Sciences. 870: 378-82. PMID 10415502 DOI: 10.1111/J.1749-6632.1999.Tb08907.X |
0.316 |
|
| 1999 |
Tanaka MM, Feldman MW. Theoretical considerations of cross-immunity, recombination and the evolution of new parasitic strains. Journal of Theoretical Biology. 198: 145-63. PMID 10339390 DOI: 10.1006/Jtbi.1999.0906 |
0.459 |
|
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