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Chanseok Shin, Ph.D. - Publications

Affiliations: 
2004 Columbia University, New York, NY 
Area:
mRNA processing
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Lee D, Park D, Park JH, Shin C. Poly(A)-specific ribonuclease sculpts the 3' ends of microRNAs. Rna (New York, N.Y.). PMID 30591540 DOI: 10.1261/Rna.069633.118  0.356
2018 Seo E, Kim T, Park JH, Yeom SI, Kim S, Seo MK, Shin C, Choi D. Genome-wide comparative analysis in Solanaceous species reveals evolution of microRNAs targeting defense genes in Capsicum spp. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 30060137 DOI: 10.1093/Dnares/Dsy025  0.383
2018 Kang I, Choi Y, Jung S, Lim JY, Lee D, Gupta S, Moon W, Shin C. Identification of target genes regulated by the Drosophila histone methyltransferase Eggless reveals a role of Decapentaplegic in apoptotic signaling. Scientific Reports. 8: 7123. PMID 29740006 DOI: 10.1038/S41598-018-25483-9  0.36
2017 Lee D, Shin C. Emerging roles of DROSHA beyond primary microRNA processing. Rna Biology. 0. PMID 29171328 DOI: 10.1080/15476286.2017.1405210  0.431
2017 Kim T, Park JH, Lee SG, Kim S, Kim J, Lee J, Shin C. Small RNA Transcriptome of Hibiscus Syriacus Provides Insights into the Potential Influence of microRNAs in Flower Development and Terpene Synthesis. Molecules and Cells. PMID 28835019 DOI: 10.14348/Molcells.2017.0086  0.398
2017 Lee D, Nam JW, Shin C. DROSHA targets its own transcript to modulate alternative splicing. Rna (New York, N.Y.). PMID 28400409 DOI: 10.1261/Rna.059808.116  0.435
2017 Park JH, Shin C. Non-canonical targets play an important role in miRNA stability control mechanism. Bmb Reports. PMID 28228216 DOI: 10.5483/Bmbrep.2017.50.4.029  0.388
2017 Son H, Park AR, Lim JY, Shin C, Lee YW. Genome-wide exonic small interference RNA-mediated gene silencing regulates sexual reproduction in the homothallic fungus Fusarium graminearum. Plos Genetics. 13: e1006595. PMID 28146558 DOI: 10.1371/Journal.Pgen.1006595  0.394
2017 Park JH, Shin SY, Shin C. Non-canonical targets destabilize microRNAs in human Argonautes. Nucleic Acids Research. PMID 28119422 DOI: 10.1093/Nar/Gkx029  0.372
2016 Zhang F, Wang L, Lim JY, Kim T, Pyo Y, Sung S, Shin C, Qiao H. Phosphorylation of CBP20 Links MicroRNA to Root Growth in the Ethylene Response. Plos Genetics. 12: e1006437. PMID 27870849 DOI: 10.1371/Journal.Pgen.1006437  0.332
2016 Shin SY, Shin C. Regulatory non-coding RNAs in plants: potential gene resources for the improvement of agricultural traits Plant Biotechnology Reports. 1-13. DOI: 10.1007/S11816-016-0389-4  0.328
2015 Park JH, Shin C. Slicer-independent mechanism drives small-RNA strand separation during human RISC assembly. Nucleic Acids Research. PMID 26384428 DOI: 10.1093/Nar/Gkv937  0.384
2015 Jayakodi M, Jung JW, Park D, Ahn YJ, Lee SC, Shin SY, Shin C, Yang TJ, Kwon HW. Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera. Bmc Genomics. 16: 680. PMID 26341079 DOI: 10.1186/S12864-015-1868-7  0.317
2015 Lee HJ, Park YJ, Kwak KJ, Kim D, Park JH, Lim JY, Shin C, Yang KY, Kang H. MicroRNA844-Guided Downregulation of Cytidinephosphate Diacylglycerol Synthase3 (CDS3) mRNA Affects the Response of Arabidopsis thaliana to Bacteria and Fungi. Molecular Plant-Microbe Interactions : Mpmi. MPMI02150028R. PMID 25775269 DOI: 10.1094/Mpmi-02-15-0028-R  0.305
2014 Eichhorn SW, Guo H, McGeary SE, Rodriguez-Mias RA, Shin C, Baek D, Hsu SH, Ghoshal K, Villén J, Bartel DP. mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues. Molecular Cell. 56: 104-15. PMID 25263593 DOI: 10.1016/J.Molcel.2014.08.028  0.366
2014 Park JH, Hong SW, Yun S, Lee DK, Shin C. Effect of siRNA with an asymmetric RNA/dTdT overhang on RNA interference activity. Nucleic Acid Therapeutics. 24: 364-71. PMID 25211666 DOI: 10.1089/Nat.2014.0494  0.352
2014 Park JH, Shin C. MicroRNA-directed cleavage of targets: mechanism and experimental approaches. Bmb Reports. 47: 417-23. PMID 24856832 DOI: 10.5483/Bmbrep.2014.47.8.109  0.383
2014 Hong SW, Park JH, Yun S, Lee CH, Shin C, Lee DK. Effect of the guide strand 3'-end structure on the gene-silencing potency of asymmetric siRNA. The Biochemical Journal. 461: 427-34. PMID 24800867 DOI: 10.1042/Bj20140407  0.349
2013 Hwang DG, Park JH, Lim JY, Kim D, Choi Y, Kim S, Reeves G, Yeom SI, Lee JS, Park M, Kim S, Choi IY, Choi D, Shin C. The hot pepper (Capsicum annuum) microRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper. Plos One. 8: e64238. PMID 23737975 DOI: 10.1371/Journal.Pone.0064238  0.386
2013 Lee J, Kim DI, Park JH, Choi IY, Shin C. MiRAuto: an automated user-friendly microRNA prediction tool utilizing plant small RNA sequencing data. Molecules and Cells. 35: 342-7. PMID 23625170 DOI: 10.1007/S10059-013-0019-8  0.379
2013 Lee TY, Chang CI, Lee D, Hong SW, Shin C, Li CJ, Kim S, Haussecker D, Lee DK. RNA interference-mediated simultaneous silencing of four genes using cross-shaped RNA. Molecules and Cells. 35: 320-6. PMID 23563800 DOI: 10.1007/S10059-013-2316-7  0.354
2013 Park JH, Ahn S, Kim S, Lee J, Nam JW, Shin C. Degradome sequencing reveals an endogenous microRNA target in C. elegans. Febs Letters. 587: 964-9. PMID 23485825 DOI: 10.1016/J.Febslet.2013.02.029  0.403
2012 Kim J, Park JH, Lim CJ, Lim JY, Ryu JY, Lee BW, Choi JP, Kim WB, Lee HY, Choi Y, Kim D, Hur CG, Kim S, Noh YS, Shin C, et al. Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars. Bmc Genomics. 13: 657. PMID 23171001 DOI: 10.1186/1471-2164-13-657  0.382
2012 Lee D, Shin C. MicroRNA-target interactions: new insights from genome-wide approaches. Annals of the New York Academy of Sciences. 1271: 118-28. PMID 23050973 DOI: 10.1111/J.1749-6632.2012.06745.X  0.362
2011 Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP. Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nature Structural & Molecular Biology. 18: 1139-46. PMID 21909094 DOI: 10.1038/Nsmb.2115  0.374
2010 Shin C, Nam JW, Farh KK, Chiang HR, Shkumatava A, Bartel DP. Expanding the microRNA targeting code: functional sites with centered pairing. Molecular Cell. 38: 789-802. PMID 20620952 DOI: 10.1016/J.Molcel.2010.06.005  0.352
2010 Flygare J, Estrada VR, Shin C, Gupta S, Lodish H. Stress Erythropoiesis: HIF-1 Alpha Synergizes with Glucocorticoids to Induce BFU-E Progenitor Self-Renewal Blood. 116: 814-814. DOI: 10.1182/Blood.V116.21.814.814  0.325
2008 Baek D, Villén J, Shin C, Camargo FD, Gygi SP, Bartel DP. The impact of microRNAs on protein output. Nature. 455: 64-71. PMID 18668037 DOI: 10.1038/Nature07242  0.414
2006 Marin-Vinader L, Shin C, Onnekink C, Manley JL, Lubsen NH. Hsp27 enhances recovery of splicing as well as rephosphorylation of SRp38 after heat shock. Molecular Biology of the Cell. 17: 886-94. PMID 16339078 DOI: 10.1091/Mbc.E05-07-0596  0.483
2005 Matranga C, Tomari Y, Shin C, Bartel DP, Zamore PD. Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell. 123: 607-20. PMID 16271386 DOI: 10.1016/J.Cell.2005.08.044  0.378
2005 Shin C, Kleiman FE, Manley JL. Multiple properties of the splicing repressor SRp38 distinguish it from typical SR proteins. Molecular and Cellular Biology. 25: 8334-43. PMID 16135820 DOI: 10.1128/Mcb.25.18.8334-8343.2005  0.642
2004 Shin C, Manley JL. Cell signalling and the control of pre-mRNA splicing. Nature Reviews. Molecular Cell Biology. 5: 727-38. PMID 15340380 DOI: 10.1038/Nrm1467  0.52
2004 Shin C, Feng Y, Manley JL. Dephosphorylated SRp38 acts as a splicing repressor in response to heat shock. Nature. 427: 553-8. PMID 14765198 DOI: 10.1038/Nature02288  0.538
2003 Shin C, Manley JL. Role of Alternative Splicing During the Cell Cycle and Programmed Cell Death Handbook of Cell Signaling. 3: 331-334. DOI: 10.1016/B978-012124546-7/50682-3  0.394
2002 Shin C, Manley JL. The SR protein SRp38 represses splicing in M phase cells. Cell. 111: 407-17. PMID 12419250 DOI: 10.1016/S0092-8674(02)01038-3  0.542
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