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James M. TIEDJE, Ph.D. - Publications

Affiliations: 
Michigan State University, East Lansing, MI 
Area:
Environmental Microbiology
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451 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Tao X, Yang Z, Feng J, Jian S, Yang Y, Bates CT, Wang G, Guo X, Ning D, Kempher ML, Liu XJA, Ouyang Y, Han S, Wu L, Zeng Y, ... ... Tiedje JM, et al. Experimental warming accelerates positive soil priming in a temperate grassland ecosystem. Nature Communications. 15: 1178. PMID 38331994 DOI: 10.1038/s41467-024-45277-0  0.539
2023 Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E, Iliopoulos I, Konstantinidis K, ... Tiedje JM, et al. Unraveling the functional dark matter through global metagenomics. Nature. 622: 594-602. PMID 37821698 DOI: 10.1038/s41586-023-06583-7  0.665
2022 Wu L, Zhang Y, Guo X, Ning D, Zhou X, Feng J, Yuan MM, Liu S, Guo J, Gao Z, Ma J, Kuang J, Jian S, Han S, Yang Z, ... ... Tiedje JM, et al. Reduction of microbial diversity in grassland soil is driven by long-term climate warming. Nature Microbiology. PMID 35697795 DOI: 10.1038/s41564-022-01147-3  0.48
2022 Tiedje JM, Bruns MA, Casadevall A, Criddle CS, Eloe-Fadrosh E, Karl DM, Nguyen NK, Zhou J. Microbes and Climate Change: a Research Prospectus for the Future. Mbio. e0080022. PMID 35438534 DOI: 10.1128/mbio.00800-22  0.382
2021 Wu L, Yang F, Feng J, Tao X, Qi Q, Wang C, Schuur EAG, Bracho R, Huang Y, Cole JR, Tiedje JM, Zhou J. Permafrost thaw with warming reduces microbial metabolic capacities in subsurface soils. Molecular Ecology. PMID 34878672 DOI: 10.1111/mec.16319  0.504
2020 Cheng J, Yang Y, Yuan MM, Gao Q, Wu L, Qin Z, Shi ZJ, Schuur EAG, Cole JR, Tiedje JM, Zhou J. Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: potential consequences on carbon stability. Molecular Ecology. PMID 33305411 DOI: 10.1111/mec.15773  0.499
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Tiedje JM, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2  0.676
2020 Guo X, Gao Q, Yuan M, Wang G, Zhou X, Feng J, Shi Z, Hale L, Wu L, Zhou A, Tian R, Liu F, Wu B, Chen L, Jung CG, ... ... Tiedje JM, et al. Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming. Nature Communications. 11: 4897. PMID 32994415 DOI: 10.1038/s41467-020-18706-z  0.646
2020 Zhu X, Jackson RD, DeLucia EH, Tiedje JM, Liang C. The soil microbial carbon pump: from conceptual insights to empirical assessments. Global Change Biology. PMID 32844509 DOI: 10.1111/Gcb.15319  0.397
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Tiedje JM, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X  0.74
2020 Tao X, Feng J, Yang Y, Wang G, Tian R, Fan F, Ning D, Bates CT, Hale L, Yuan MM, Wu L, Gao Q, Lei J, Schuur EAG, Yu J, ... ... Tiedje JM, et al. Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria. Microbiome. 8: 84. PMID 32503635 DOI: 10.1186/S40168-020-00838-5  0.79
2020 Wu R, Chai B, Cole JR, Gunturu SK, Guo X, Tian R, Gu JD, Zhou J, Tiedje JM. Targeted assemblies of cas1 suggest CRISPR-Cas's response to soil warming. The Isme Journal. PMID 32221408 DOI: 10.1038/S41396-020-0635-1  0.494
2020 Mirza BS, McGlinn DJ, Bohannan BJM, Nüsslein K, Tiedje JM, Rodrigues JLM. Diazotrophs show sign of restoration in Amazon rainforest soils with ecosystem rehabilitation. Applied and Environmental Microbiology. PMID 32169937 DOI: 10.1128/Aem.00195-20  0.344
2020 Chai B, Tsoi T, Sallach JB, Liu C, Landgraf J, Bezdek M, Zylstra G, Li H, Johnston CT, Teppen BJ, Cole JR, Boyd SA, Tiedje JM. Bioavailability of clay-adsorbed dioxin to Sphingomonas wittichii RW1 and its associated genome-wide shifts in gene expression. The Science of the Total Environment. 712: 135525. PMID 32050392 DOI: 10.1016/J.Scitotenv.2019.135525  0.396
2020 Feng J, Wang C, Lei J, Yang Y, Yan Q, Zhou X, Tao X, Ning D, Yuan MM, Qin Y, Shi ZJ, Guo X, He Z, Van Nostrand JD, Wu L, ... ... Tiedje JM, et al. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome. 8: 3. PMID 31952472 DOI: 10.1186/S40168-019-0778-3  0.805
2020 Xu J, Roley SS, Tfaily MM, Chu RK, Tiedje JM. Organic amendments change soil organic C structure and microbial community but not total organic matter on sub-decadal scales Soil Biology & Biochemistry. 150: 107986. DOI: 10.1016/J.Soilbio.2020.107986  0.427
2019 Gupta VVSR, Zhang B, Penton CR, Yu J, Tiedje JM. Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil. Frontiers in Molecular Biosciences. 6: 115. PMID 31750314 DOI: 10.3389/Fmolb.2019.00115  0.707
2019 Guo J, Quensen JF, Sun Y, Wang Q, Brown CT, Cole JR, Tiedje JM. Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes. Frontiers in Genetics. 10: 957. PMID 31749830 DOI: 10.3389/Fgene.2019.00957  0.41
2019 Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown MR, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Tiedje JM, et al. Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31728072 DOI: 10.1038/S41564-019-0617-0  0.541
2019 Deng J, Auchtung JM, Konstantinidis KT, Brettar I, Höfle MG, Tiedje JM. Genomic Variations Underlying Speciation and Niche Specialization of . Msystems. 4. PMID 31615877 DOI: 10.1128/mSystems.00560-19  0.629
2019 de Los Santos Villalobos S, Robles RI, Parra Cota FI, Larsen J, Lozano P, Tiedje JM. sp. nov., an endophytic plant growth promoting bacterium isolated from wheat ( subsp) in the Yaqui Valley, Mexico. International Journal of Systematic and Evolutionary Microbiology. PMID 31526457 DOI: 10.1099/Ijsem.0.003711  0.347
2019 Xu M, Stedtfeld RD, Wang F, Hashsham SA, Song Y, Chuang Y, Fan J, Li H, Jiang X, Tiedje JM. Composting increased persistence of manure-borne antibiotic resistance genes in soils with different fertilization history. The Science of the Total Environment. 689: 1172-1180. PMID 31466157 DOI: 10.1016/J.Scitotenv.2019.06.376  0.381
2019 Ning D, Deng Y, Tiedje JM, Zhou J. A general framework for quantitatively assessing ecological stochasticity. Proceedings of the National Academy of Sciences of the United States of America. PMID 31391302 DOI: 10.1073/Pnas.1904623116  0.483
2019 Hale L, Feng W, Yin H, Guo X, Zhou X, Bracho R, Pegoraro E, Penton CR, Wu L, Cole J, Konstantinidis KT, Luo Y, Tiedje JM, Schuur EAG, Zhou J. Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon. The Isme Journal. PMID 31384013 DOI: 10.1038/S41396-019-0485-X  0.81
2019 Shen Y, Stedtfeld RD, Guo X, Bhalsod GD, Jeon S, Tiedje JM, Li H, Zhang W. Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface- and overhead-irrigated greenhouse lettuce. Environment International. 131: 105031. PMID 31336252 DOI: 10.1016/J.Envint.2019.105031  0.422
2019 Johnston ER, Hatt JK, He Z, Wu L, Guo X, Luo Y, Schuur EAG, Tiedje JM, Zhou J, Konstantinidis KT. Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. Proceedings of the National Academy of Sciences of the United States of America. PMID 31285347 DOI: 10.1073/Pnas.1901307116  0.676
2019 Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown M, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Tiedje JM, et al. Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31086312 DOI: 10.1038/S41564-019-0426-5  0.594
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Tiedje JM, et al. Consent insufficient for data release-Response. Science (New York, N.Y.). 364: 446. PMID 31048484 DOI: 10.1126/Science.Aax7509  0.625
2019 Guo X, Zhou X, Hale L, Yuan M, Ning D, Feng J, Shi Z, Li Z, Feng B, Gao Q, Wu L, Shi W, Zhou A, Fu Y, Wu L, ... ... Tiedje JM, et al. Climate warming accelerates temporal scaling of grassland soil microbial biodiversity. Nature Ecology & Evolution. PMID 30911147 DOI: 10.1038/S41559-019-0848-8  0.522
2019 Feng J, Penton CR, He Z, Van Nostrand JD, Yuan MM, Wu L, Wang C, Qin Y, Shi ZJ, Guo X, Schuur EAG, Luo Y, Bracho R, Konstantinidis KT, Cole JR, ... Tiedje JM, et al. Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils. Mbio. 10. PMID 30808694 DOI: 10.1128/Mbio.02521-18  0.806
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Tiedje JM, et al. Toward unrestricted use of public genomic data. Science (New York, N.Y.). 363: 350-352. PMID 30679363 DOI: 10.1126/Science.Aaw1280  0.635
2019 Caskey WH, Tiedje JM. Nitrate-stimulated mineralization of ammonium in anaerobic soils. Oecologia. 41: 339-341. PMID 28309771 DOI: 10.1007/Bf00377438  0.351
2019 Roley SS, Xue C, Hamilton SK, Tiedje JM, Robertson GP. Isotopic evidence for episodic nitrogen fixation in switchgrass (Panicum virgatum L.) Soil Biology and Biochemistry. 129: 90-98. DOI: 10.1016/J.Soilbio.2018.11.006  0.469
2019 Pegoraro E, Mauritz M, Bracho R, Ebert C, Dijkstra P, Hungate BA, Konstantinidis KT, Luo Y, Schädel C, Tiedje JM, Zhou J, Schuur EA. Glucose addition increases the magnitude and decreases the age of soil respired carbon in a long-term permafrost incubation study Soil Biology and Biochemistry. 129: 201-211. DOI: 10.1016/J.Soilbio.2018.10.009  0.651
2019 Jia Z, Hu X, Xia W, Fornara D, Nannipieri P, Tiedje J. Community shift of microbial ammonia oxidizers in air-dried rice soils after 22 years of nitrogen fertilization Biology and Fertility of Soils. 55: 419-424. DOI: 10.1007/S00374-019-01352-Z  0.39
2018 Khan MAW, Bohannan BJM, Nüsslein K, Tiedje JM, Tringe SG, Parlade E, Barberán A, Rodrigues JLM. Deforestation Impacts Network Co-occurrence Patterns of Microbial Communities in Amazon Soils. Fems Microbiology Ecology. PMID 30481288 DOI: 10.1093/Femsec/Fiy230  0.385
2018 Vital M, Howe A, Bergeron N, Krauss RM, Jansson JK, Tiedje JM. Metagenomic insights into resistant starch degradation by human gut microbiota. Applied and Environmental Microbiology. PMID 30266729 DOI: 10.1128/Aem.01562-18  0.553
2018 Zhang Y, Boyd SA, Teppen BJ, Tiedje JM, Zhang W, Zhu D, Li H. Bioavailability of tetracycline to antibiotic resistant Escherichia coli in water-clay systems. Environmental Pollution (Barking, Essex : 1987). 243: 1078-1086. PMID 30253298 DOI: 10.1016/J.Envpol.2018.09.059  0.365
2018 Mackelprang R, Grube AM, Lamendella R, Jesus EDC, Copeland A, Liang C, Jackson RD, Rice CW, Kapucija S, Parsa B, Tringe SG, Tiedje JM, Jansson JK. Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States. Frontiers in Microbiology. 9: 1775. PMID 30158906 DOI: 10.3389/Fmicb.2018.01775  0.629
2018 Liang J, Zhou Z, Huo C, Shi Z, Cole JR, Huang L, Konstantinidis KT, Li X, Liu B, Luo Z, Penton CR, Schuur EAG, Tiedje JM, Wang YP, Wu L, et al. More replenishment than priming loss of soil organic carbon with additional carbon input. Nature Communications. 9: 3175. PMID 30093611 DOI: 10.1038/S41467-018-05667-7  0.78
2018 Kroeger ME, Delmont TO, Eren AM, Meyer KM, Guo J, Khan K, Rodrigues JLM, Bohannan BJM, Tringe SG, Borges CD, Tiedje JM, Tsai SM, Nüsslein K. New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes. Frontiers in Microbiology. 9: 1635. PMID 30083144 DOI: 10.3389/Fmicb.2018.01635  0.414
2018 Stedtfeld RD, Guo X, Stedtfeld TM, Sheng H, Williams MR, Hauschild K, Gunturu S, Tift L, Wang F, Howe A, Chai B, Yin D, Cole JR, Tiedje JM, Hashsham SA. Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements. Fems Microbiology Ecology. 94. PMID 30052926 DOI: 10.1093/Femsec/Fiy130  0.347
2018 Zhang AN, Li LG, Ma L, Gillings MR, Tiedje JM, Zhang T. Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection. Microbiome. 6: 130. PMID 30031405 DOI: 10.1186/S40168-018-0516-2  0.31
2018 Guo X, Stedtfeld RD, Hedman H, Eisenberg JNS, Truebac G, Yin D, Tiedje JM, Zhang L. Antibiotic Resistome Associated with Small-scale Poultry Production in Rural Ecuador. Environmental Science & Technology. PMID 29944836 DOI: 10.1021/Acs.Est.8B01667  0.335
2018 Rodriguez-R LM, Gunturu S, Harvey WT, Rosselló-Mora R, Tiedje JM, Cole JR, Konstantinidis KT. The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. Nucleic Acids Research. PMID 29905870 DOI: 10.1093/Nar/Gky467  0.575
2018 Guo X, Zhou X, Hale L, Yuan M, Feng J, Ning D, Shi Z, Qin Y, Liu F, Wu L, He Z, Van Nostrand JD, Liu X, Luo Y, Tiedje JM, et al. Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass. Frontiers in Microbiology. 9: 954. PMID 29904372 DOI: 10.3389/Fmicb.2018.00954  0.577
2018 Roley SS, Duncan DS, Liang D, Garoutte A, Jackson RD, Tiedje JM, Robertson GP. Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient. Plos One. 13: e0197320. PMID 29856843 DOI: 10.1371/Journal.Pone.0197320  0.475
2018 Liang J, Xia J, Shi Z, Jiang L, Ma S, Lu X, Mauritz M, Natali SM, Pegoraro E, Penton CR, Plaza C, Salmon VG, Celis G, Cole JR, Konstantinidis KT, ... Tiedje JM, et al. Biotic responses buffer warming-induced soil organic carbon loss in Arctic tundra. Global Change Biology. PMID 29802797 DOI: 10.1111/Gcb.14325  0.791
2018 Rodriguez-R LM, Gunturu S, Tiedje JM, Cole JR, Konstantinidis KT. Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity. Msystems. 3. PMID 29657970 DOI: 10.1128/mSystems.00039-18  0.527
2018 Xiao J, Yu F, Zhu W, Xu C, Zhang K, Luo Y, Tiedje JM, Zhou J, Cheng L. Comment on "The whole-soil carbon flux in response to warming". Science (New York, N.Y.). 359. PMID 29472453 DOI: 10.1126/Science.Aao0218  0.508
2018 Li B, Wu WM, Watson DB, Cardenas E, Chao Y, Phillips DH, Mehlhorn T, Lowe K, Kelly SD, Li P, Tao H, Tiedje JM, Criddle CS, Zhang T. Bacterial Community Shift and Coexisting/Coexcluding Patterns Revealed by Network Analysis in A Bioreduced Uranium Contaminated Site after Reoxidation. Applied and Environmental Microbiology. PMID 29453264 DOI: 10.1128/Aem.02885-17  0.387
2018 de Los Santos-Villalobos S, Kremer JM, Parra-Cota FI, Hayano-Kanashiro AC, García-Ortega LF, Gunturu SK, Tiedje JM, He SY, Peña-Cabriales JJ. Draft genome of the fungicidal biological control agent Burkholderia anthina strain XXVI. Archives of Microbiology. 200: 803-810. PMID 29428982 DOI: 10.1007/S00203-018-1490-6  0.318
2018 Rodriguez-R LM, Castro JC, Kyrpides NC, Cole JR, Tiedje JM, Konstantinidis KT. How much do rRNA gene surveys underestimate extant bacterial diversity? Applied and Environmental Microbiology. PMID 29305502 DOI: 10.1128/Aem.00014-18  0.607
2018 Guo X, Feng J, Shi Z, Zhou X, Yuan M, Tao X, Hale L, Yuan T, Wang J, Qin Y, Zhou A, Fu Y, Wu L, He Z, Van Nostrand JD, ... ... Tiedje JM, et al. Climate warming leads to divergent succession of grassland microbial communities Nature Climate Change. 8: 813-818. DOI: 10.1038/S41558-018-0254-2  0.531
2018 Xue C, Hao Y, Pu X, Ryan Penton C, Wang Q, Zhao M, Zhang B, Ran W, Huang Q, Shen Q, Tiedje JM. Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities Biology and Fertility of Soils. 55: 79-88. DOI: 10.1007/S00374-018-1331-4  0.341
2017 Etchebarne BE, Li Z, Stedtfeld RD, Nicholas MC, Williams MR, Johnson TA, Stedtfeld TM, Kostic T, Khalife WT, Tiedje JM, Hashsham SA, Hughes MJ. Evaluation of Nucleic Acid Isothermal Amplification Methods for Human Clinical Microbial Infection Detection. Frontiers in Microbiology. 8: 2211. PMID 29312154 DOI: 10.3389/Fmicb.2017.02211  0.503
2017 Deng J, Auchtung J, Konstantinidis KT, Caro-Quintero A, Brettar I, Höfle M, Tiedje JM. Divergence in gene regulation contributes to sympatric speciation of Shewanella baltica strains. Applied and Environmental Microbiology. PMID 29222101 DOI: 10.1128/Aem.02015-17  0.657
2017 Šket R, Treichel N, Kublik S, Debevec T, Eiken O, Mekjavić I, Schloter M, Vital M, Chandler J, Tiedje JM, Murovec B, Prevoršek Z, Likar M, Stres B. Hypoxia and inactivity related physiological changes precede or take place in absence of significant rearrangements in bacterial community structure: The PlanHab randomized trial pilot study. Plos One. 12: e0188556. PMID 29211803 DOI: 10.1371/Journal.Pone.0188556  0.339
2017 Do TT, Tamames J, Stedtfeld RD, Guo X, Murphy S, Tiedje JM, Walsh F. Antibiotic Resistance Gene Detection in the Microbiome Context. Microbial Drug Resistance (Larchmont, N.Y.). PMID 29185915 DOI: 10.1089/Mdr.2017.0199  0.364
2017 Stedtfeld RD, Brett Sallach J, Crawford RB, Stedtfeld TM, Williams MR, Waseem H, Johnston CT, Li H, Teppen BJ, Kaminski NE, Boyd SA, Tiedje JM, Hashsham SA. TCDD administered on activated carbon eliminates bioavailability and subsequent shifts to a key murine gut commensal. Applied Microbiology and Biotechnology. PMID 28812142 DOI: 10.1007/S00253-017-8460-9  0.341
2017 Yuan MM, Zhang J, Xue K, Wu L, Deng Y, Deng J, Hale L, Zhou X, He Z, Yang Y, Van Nostrand JD, Schuur EAG, Konstantinidis KT, Penton CR, Cole JR, ... Tiedje JM, et al. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. Global Change Biology. PMID 28715138 DOI: 10.1111/Gcb.13820  0.829
2017 Robertson GP, Hamilton SK, Barham BL, Dale BE, Izaurralde RC, Jackson RD, Landis DA, Swinton SM, Thelen KD, Tiedje JM. Cellulosic biofuel contributions to a sustainable energy future: Choices and outcomes. Science (New York, N.Y.). 356. PMID 28663443 DOI: 10.1126/Science.Aal2324  0.43
2017 Fonseca EDS, Peixoto RS, Rosado AS, Balieiro FC, Tiedje JM, Rachid CTCDC. The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation. Microbial Ecology. PMID 28634640 DOI: 10.1007/S00248-017-1014-Y  0.385
2017 Chen Z, Zhang W, Wang G, Zhang Y, Gao Y, Boyd SA, Teppen BJ, Tiedje JM, Zhu D, Li H. Bioavailability of Soil-Sorbed Tetracycline to Escherichia coli under Unsaturated Conditions. Environmental Science & Technology. PMID 28525258 DOI: 10.1021/Acs.Est.7B00590  0.357
2017 Šket R, Treichel N, Debevec T, Eiken O, Mekjavic I, Schloter M, Vital M, Chandler J, Tiedje JM, Murovec B, Prevoršek Z, Stres B. Hypoxia and Inactivity Related Physiological Changes (Constipation, Inflammation) Are Not Reflected at the Level of Gut Metabolites and Butyrate Producing Microbial Community: The PlanHab Study. Frontiers in Physiology. 8: 250. PMID 28522975 DOI: 10.3389/Fphys.2017.00250  0.336
2017 Stedtfeld RD, Stedtfeld TM, Fader KA, Williams MR, Bhaduri P, Quensen J, Zacharewski TR, Tiedje JM, Hashsham SA. TCDD influences reservoir of antibiotic resistance genes in murine gut microbiome. Fems Microbiology Ecology. PMID 28475713 DOI: 10.1093/Femsec/Fix058  0.317
2017 Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo X, Chai B, Williams MR, Shook T, Logan A, Graham A, Chae JC, Sul WJ, VanHouten J, Cole JR, Zylstra GJ, ... Tiedje JM, et al. Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. Journal of Environmental Management. 198: 213-220. PMID 28460328 DOI: 10.1016/J.Jenvman.2017.04.079  0.677
2017 Muurinen J, Stedtfeld RD, Karkman A, Pärnänen K, Tiedje JM, Virta MPJ. Influence of Manure Application on the Environmental Resistome Under Finnish Agricultural Practice with Restricted Antibiotic Use. Environmental Science & Technology. PMID 28453251 DOI: 10.1021/Acs.Est.7B00551  0.359
2017 Srinivasan V, Stedtfeld RD, Tourlousse DM, Baushke SW, Xin Y, Miller SM, Pham T, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA. Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner. Journal of Microbiological Methods. PMID 28438642 DOI: 10.1016/J.Mimet.2017.04.009  0.306
2017 Cheng L, Zhang N, Yuan M, Xiao J, Qin Y, Deng Y, Tu Q, Xue K, Van Nostrand JD, Wu L, He Z, Zhou X, Leigh MB, Konstantinidis KT, Schuur EA, ... ... Tiedje JM, et al. Warming enhances old organic carbon decomposition through altering functional microbial communities. The Isme Journal. PMID 28430189 DOI: 10.1038/Ismej.2017.48  0.686
2017 Waseem H, Williams MR, Stedtfeld T, Chai B, Stedtfeld RD, Cole JR, Tiedje JM, Hashsham SA. Virulence factor activity relationships (VFARs): a bioinformatics perspective. Environmental Science. Processes & Impacts. PMID 28261716 DOI: 10.1039/C6Em00689B  0.316
2017 Meyer KM, Klein AM, Rodrigues JL, Nüsslein K, Tringe SG, Mirza BS, Tiedje JM, Bohannan BJ. Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms. Molecular Ecology. PMID 28100018 DOI: 10.1111/Mec.14011  0.599
2017 JIA Z, KUZYAKOV Y, MYROLD D, TIEDJE J. Soil Organic Carbon in a Changing World Pedosphere. 27: 789-791. DOI: 10.1016/S1002-0160(17)60489-2  0.331
2017 Zhang B, Penton CR, Xue C, Quensen JF, Roley SS, Guo J, Garoutte A, Zheng T, Tiedje JM. Soil depth and crop determinants of bacterial communities under ten biofuel cropping systems Soil Biology and Biochemistry. 112: 140-152. DOI: 10.1016/J.Soilbio.2017.04.019  0.728
2016 Muziasari WI, Pitkänen LK, Sørum H, Stedtfeld RD, Tiedje JM, Virta M. The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms. Frontiers in Microbiology. 7: 2137. PMID 28111573 DOI: 10.3389/Fmicb.2016.02137  0.344
2016 Choi J, Yang F, Stepanauskas R, Cardenas E, Garoutte A, Williams R, Flater J, Tiedje JM, Hofmockel KS, Gelder B, Howe A. Strategies to improve reference databases for soil microbiomes. The Isme Journal. PMID 27935589 DOI: 10.1038/Ismej.2016.168  0.335
2016 Penton CR, Yang C, Wu L, Wang Q, Zhang J, Liu F, Qin Y, Deng Y, Hemme CL, Zheng T, Schuur EA, Tiedje J, Zhou J. NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient. Frontiers in Microbiology. 7: 1894. PMID 27933054 DOI: 10.3389/Fmicb.2016.01894  0.758
2016 de Carvalho TS, Jesus ED, Barlow J, Gardner TA, Soares IC, Tiedje JM, Moreira FM. Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria. Ecology. 97: 2760-2771. PMID 27859123 DOI: 10.1002/Ecy.1513  0.412
2016 Wang F, Stedtfeld RD, Kim OS, Chai B, Yang L, Stedtfeld TM, Hong SG, Kim D, Lim HS, Hashsham SA, Tiedje JM, Sul WJ. Influence of Soil Characteristics and Proximity to Antarctic Research Stations on Abundance of Antibiotic Resistance Genes in Soils. Environmental Science & Technology. PMID 27797533 DOI: 10.1021/Acs.Est.6B02863  0.694
2016 Garoutte A, Cardenas E, Tiedje J, Howe A. Methodologies for probing the metatranscriptome of grassland soil. Journal of Microbiological Methods. 131: 122-129. PMID 27793585 DOI: 10.1016/J.Mimet.2016.10.018  0.431
2016 Hambright WS, Deng J, Tiedje JM, Brettar I, Rodrigues JL. Shewanella baltica Ecotypes Have Wide Transcriptional Variation under the Same Growth Conditions. Msphere. 1. PMID 27777983 DOI: 10.1128/mSphere.00158-16  0.616
2016 Xue K, Yuan MM, Xie J, Li D, Qin Y, Hale LE, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Tiedje JM, Zhou J. Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming. Mbio. 7. PMID 27677789 DOI: 10.1128/Mbio.00976-16  0.547
2016 Penton CR, Gupta VV, Yu J, Tiedje JM. Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons. Frontiers in Microbiology. 7: 824. PMID 27313569 DOI: 10.3389/Fmicb.2016.00824  0.743
2016 Chai B, Tsoi TV, Iwai S, Liu C, Fish JA, Gu C, Johnson TA, Zylstra G, Teppen BJ, Li H, Hashsham SA, Boyd SA, Cole JR, Tiedje JM. Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay. Plos One. 11: e0157008. PMID 27309357 DOI: 10.1371/Journal.Pone.0157008  0.571
2016 Johnston ER, Rodriguez-R LM, Luo C, Yuan MM, Wu L, He Z, Schuur EA, Luo Y, Tiedje JM, Zhou J, Konstantinidis KT. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem. Frontiers in Microbiology. 7: 579. PMID 27199914 DOI: 10.3389/Fmicb.2016.00579  0.701
2016 Yang Y, Jiang X, Chai B, Ma L, Li B, Zhang A, Cole JR, Tiedje JM, Zhang T. ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. Bioinformatics (Oxford, England). PMID 27153579 DOI: 10.1093/Bioinformatics/Btw136  0.327
2016 Johnson TA, Stedtfeld RD, Wang Q, Cole JR, Hashsham SA, Looft T, Zhu YG, Tiedje JM. Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture. Mbio. 7. PMID 27073098 DOI: 10.1128/Mbio.02214-15  0.51
2016 Wei H, Dai J, Xia M, Romine MF, Shi L, Beliav A, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J, Qiu D. Functional Roles of CymA and NapC in Reduction of Nitrate and Nitrite by Shewanella putrefaciens W3-18-1. Microbiology (Reading, England). PMID 27010745 DOI: 10.1099/Mic.0.000285  0.455
2016 Muziasari WI, Pärnänen K, Johnson TA, Lyra C, Karkman A, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M. Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments. Fems Microbiology Ecology. PMID 26976842 DOI: 10.1093/Femsec/Fiw052  0.538
2016 Stedtfeld RD, Williams M, Fakher U, Johnson TA, Stedtfeld TM, Wang F, Khalife WT, Hughes M, Etchebarne B, Tiedje JM, Hashsham SA. Antimicrobial Resistance (AR) Dashboard Application for Mapping Environmental Occurrence and Resistant Pathogens. Fems Microbiology Ecology. PMID 26850162 DOI: 10.1093/Femsec/Fiw020  0.535
2016 Karkman A, Johnson TA, Lyra C, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M. High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant. Fems Microbiology Ecology. PMID 26832203 DOI: 10.1093/Femsec/Fiw014  0.544
2016 Xue C, Penton CR, Zhang B, Zhao M, Rothstein DE, Mladenoff DJ, Forrester JA, Shen Q, Tiedje JM. Soil fungal and bacterial responses to conversion of open land to short-rotation woody biomass crops Gcb Bioenergy. DOI: 10.1111/Gcbb.12303  0.712
2016 Xue K, M. Yuan M, J. Shi Z, Qin Y, Deng Y, Cheng L, Wu L, He Z, Van Nostrand JD, Bracho R, Natali S, Schuur EAG, Luo C, Konstantinidis KT, Wang Q, ... ... Tiedje J, et al. Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming Nature Climate Change. 6: 595-600. DOI: 10.1038/Nclimate2940  0.641
2016 Bracho R, Natali S, Pegoraro E, Crummer KG, Schädel C, Celis G, Hale L, Wu L, Yin H, Tiedje JM, Konstantinidis KT, Luo Y, Zhou J, Schuur EAG. Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations Soil Biology and Biochemistry. 97: 1-14. DOI: 10.1016/J.Soilbio.2016.02.008  0.674
2016 Liang C, Jesus EdC, Duncan DS, Quensen JF, Jackson RD, Balser TC, Tiedje JM. Switchgrass rhizospheres stimulate microbial biomass but deplete microbial necromass in agricultural soils of the upper Midwest, USA Soil Biology and Biochemistry. 94: 173-180. DOI: 10.1016/J.Soilbio.2015.11.020  0.798
2016 Hamaoui GS, Rodrigues JLM, Bohannan BJM, Tiedje JM, Nüsslein K. Land-use change drives abundance and community structure alterations of thaumarchaeal ammonia oxidizers in tropical rainforest soils in Rondônia, Brazil Applied Soil Ecology. 107: 48-56. DOI: 10.1016/J.Apsoil.2016.05.012  0.367
2016 Zhu Y, Su J, Cao Z, Xue K, Quensen J, Guo G, Yang Y, Zhou J, Chu H, Tiedje JM. A buried Neolithic paddy soil reveals loss of microbial functional diversity after modern rice cultivation Science Bulletin. 61: 1052-1060. DOI: 10.1007/S11434-016-1112-0  0.543
2015 Navarrete AA, Venturini AM, Meyer KM, Klein AM, Tiedje JM, Bohannan BJ, Nüsslein K, Tsai SM, Rodrigues JL. Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon. Frontiers in Microbiology. 6: 1443. PMID 26733981 DOI: 10.3389/Fmicb.2015.01443  0.601
2015 Ma L, Xia Y, Li B, Yang Y, Li LG, Tiedje JM, Zhang T. Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken and Human Feces. Environmental Science & Technology. PMID 26650334 DOI: 10.1021/Acs.Est.5B03522  0.328
2015 Hemme CL, Tu Q, Shi Z, Qin Y, Gao W, Deng Y, Nostrand JD, Wu L, He Z, Chain PS, Tringe SG, Fields MW, Rubin EM, Tiedje JM, Hazen TC, et al. Comparative metagenomics reveals impact of contaminants on groundwater microbiomes. Frontiers in Microbiology. 6: 1205. PMID 26583008 DOI: 10.3389/Fmicb.2015.01205  0.652
2015 Guo J, Cole JR, Zhang Q, Brown CT, Tiedje JM. Microbial community analysis with ribosomal gene fragments from shotgun metagenomes. Applied and Environmental Microbiology. PMID 26475107 DOI: 10.1128/Aem.02772-15  0.409
2015 Singh P, Teal TK, Marsh TL, Tiedje JM, Mosci R, Jernigan K, Zell A, Newton DW, Salimnia H, Lephart P, Sundin D, Khalife W, Britton RA, Rudrik JT, Manning SD. Intestinal microbial communities associated with acute enteric infections and disease recovery. Microbiome. 3: 45. PMID 26395244 DOI: 10.1186/S40168-015-0109-2  0.324
2015 Penton CR, St Louis D, Pham A, Cole JR, Wu L, Luo Y, Schuur EA, Zhou J, Tiedje JM. Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils. Frontiers in Microbiology. 6: 746. PMID 26284038 DOI: 10.3389/Fmicb.2015.00746  0.772
2015 Stedtfeld RD, Liu YC, Stedtfeld TM, Kostic T, Kronlein M, Srivannavit O, Khalife WT, Tiedje JM, Gulari E, Hughes M, Etchebarne B, Hashsham SA. Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens. Biomedical Microdevices. 17: 9994. PMID 26260693 DOI: 10.1007/S10544-015-9994-1  0.3
2015 Wang Q, Fish JA, Gilman M, Sun Y, Brown CT, Tiedje JM, Cole JR. Xander: employing a novel method for efficient gene-targeted metagenomic assembly. Microbiome. 3: 32. PMID 26246894 DOI: 10.1186/S40168-015-0093-6  0.344
2015 Li B, Yang Y, Ma L, Ju F, Guo F, Tiedje JM, Zhang T. Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes. The Isme Journal. PMID 25918831 DOI: 10.1038/Ismej.2015.59  0.334
2015 Zhang B, Penton CR, Xue C, Wang Q, Zheng T, Tiedje JM. Evaluation of the Ion Torrent Personal Genome Machine for Gene-Targeted Studies Using Amplicons of the Nitrogenase Gene nifH. Applied and Environmental Microbiology. 81: 4536-45. PMID 25911484 DOI: 10.1128/Aem.00111-15  0.732
2015 Zhang P, Wu WM, Van Nostrand JD, Deng Y, He Z, Gihring T, Zhang G, Schadt CW, Watson D, Jardine P, Criddle CS, Brooks S, Marsh TL, Tiedje JM, Arkin AP, et al. Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction. Applied and Environmental Microbiology. 81: 4164-72. PMID 25862231 DOI: 10.1128/Aem.00043-15  0.519
2015 Rachid CT, Balieiro FC, Fonseca ES, Peixoto RS, Chaer GM, Tiedje JM, Rosado AS. Intercropped silviculture systems, a key to achieving soil fungal community management in eucalyptus plantations. Plos One. 10: e0118515. PMID 25706388 DOI: 10.1371/Journal.Pone.0118515  0.415
2015 Gillings MR, Gaze WH, Pruden A, Smalla K, Tiedje JM, Zhu YG. Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution. The Isme Journal. 9: 1269-79. PMID 25500508 DOI: 10.1038/Ismej.2014.226  0.352
2015 Deng J, Gu Y, Zhang J, Xue K, Qin Y, Yuan M, Yin H, He Z, Wu L, Schuur EA, Tiedje JM, Zhou J. Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska. Molecular Ecology. 24: 222-34. PMID 25424441 DOI: 10.1111/Mec.13015  0.647
2015 Su JQ, Ding LJ, Xue K, Yao HY, Quensen J, Bai SJ, Wei WX, Wu JS, Zhou J, Tiedje JM, Zhu YG. Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil. Molecular Ecology. 24: 136-50. PMID 25410123 DOI: 10.1111/Mec.13010  0.555
2015 Vital M, Gao J, Rizzo M, Harrison T, Tiedje JM. Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia. The Isme Journal. 9: 832-43. PMID 25343515 DOI: 10.1038/Ismej.2014.179  0.38
2015 Vital M, Chai B, Østman B, Cole J, Konstantinidis KT, Tiedje JM. Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification. The Isme Journal. 9: 1130-40. PMID 25343512 DOI: 10.1038/Ismej.2014.204  0.573
2015 Penton CR, St. Louis D, Pham A, Cole JR, Wu L, Luo Y, Schuur EAG, Zhou J, Tiedje JM. Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils Frontiers in Microbiology. 6. DOI: 10.3389/fmicb.2015.00746  0.696
2015 Jesus EdC, Liang C, Quensen JF, Susilawati E, Jackson RD, Balser TC, Tiedje JM. Influence of corn, switchgrass, and prairie cropping systems on soil microbial communities in the upper Midwest of the United States Gcb Bioenergy. DOI: 10.1111/Gcbb.12289  0.791
2015 Liang J, Li D, Shi Z, Tiedje JM, Zhou J, Schuur EAG, Konstantinidis KT, Luo Y. Methods for estimating temperature sensitivity of soil organic matter based on incubation data: A comparative evaluation Soil Biology and Biochemistry. 80: 127-135. DOI: 10.1016/J.Soilbio.2014.10.005  0.608
2014 Zaborin A, Smith D, Garfield K, Quensen J, Shakhsheer B, Kade M, Tirrell M, Tiedje J, Gilbert JA, Zaborina O, Alverdy JC. Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness. Mbio. 5: e01361-14. PMID 25249279 DOI: 10.1128/Mbio.01361-14  0.35
2014 Zhang Y, Boyd SA, Teppen BJ, Tiedje JM, Li H. Organic acids enhance bioavailability of tetracycline in water to Escherichia coli for uptake and expression of antibiotic resistance. Water Research. 65: 98-106. PMID 25100186 DOI: 10.1016/J.Watres.2014.07.021  0.306
2014 Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, ... ... Tiedje JM, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920  0.758
2014 Siles JA, Rachid CT, Sampedro I, García-Romera I, Tiedje JM. Microbial diversity of a Mediterranean soil and its changes after biotransformed dry olive residue amendment. Plos One. 9: e103035. PMID 25058610 DOI: 10.1371/Journal.Pone.0103035  0.433
2014 Paula FS, Rodrigues JL, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJ, Nüsslein K, Deng Y, Tiedje JM, Pellizari VH. Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities. Molecular Ecology. 23: 2988-99. PMID 24806276 DOI: 10.1111/Mec.12786  0.676
2014 Vital M, Howe AC, Tiedje JM. Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data. Mbio. 5: e00889. PMID 24757212 DOI: 10.1128/Mbio.00889-14  0.38
2014 Penton CR, Gupta VV, Tiedje JM, Neate SM, Ophel-Keller K, Gillings M, Harvey P, Pham A, Roget DK. Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing. Plos One. 9: e93893. PMID 24699870 DOI: 10.1371/Journal.Pone.0093893  0.738
2014 Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes. Proceedings of the National Academy of Sciences of the United States of America. 111: 4904-9. PMID 24632729 DOI: 10.1073/Pnas.1402564111  0.612
2014 Zhou J, Deng Y, Zhang P, Xue K, Liang Y, Van Nostrand JD, Yang Y, He Z, Wu L, Stahl DA, Hazen TC, Tiedje JM, Arkin AP. Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proceedings of the National Academy of Sciences of the United States of America. 111: E836-45. PMID 24550501 DOI: 10.1073/Pnas.1324044111  0.493
2014 Luo C, Rodriguez-R LM, Johnston ER, Wu L, Cheng L, Xue K, Tu Q, Deng Y, He Z, Shi JZ, Yuan MM, Sherry RA, Li D, Luo Y, Schuur EA, ... ... Tiedje JM, et al. Soil microbial community responses to a decade of warming as revealed by comparative metagenomics. Applied and Environmental Microbiology. 80: 1777-86. PMID 24375144 DOI: 10.1128/Aem.03712-13  0.757
2014 Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Research. 42: D633-42. PMID 24288368 DOI: 10.1093/Nar/Gkt1244  0.37
2014 Deng J, Brettar I, Luo C, Auchtung J, Konstantinidis KT, Rodrigues JL, Höfle M, Tiedje JM. Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea. Environmental Microbiology. 16: 1854-66. PMID 24286373 DOI: 10.1111/1462-2920.12344  0.73
2014 Yang Y, Quensen J, Mathieu J, Wang Q, Wang J, Li M, Tiedje JM, Alvarez PJ. Pyrosequencing reveals higher impact of silver nanoparticles than Ag+ on the microbial community structure of activated sludge. Water Research. 48: 317-25. PMID 24120408 DOI: 10.1016/J.Watres.2013.09.046  0.316
2014 Stres B, Sul WJ, Murovec B, Tiedje JM. Correction: Recently deglaciated high-altitude soils of the himalaya: Diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere (PLoS ONE) Plos One. 9. DOI: 10.1371/annotation/1406824c-f082-400b-8fc7-4995c97a6249  0.663
2014 Penton CR, Deenik JL, Popp BN, Bruland GL, Engstrom P, Mueller J, Worden A, Tiedje JM. Assessing nitrogen transformations in a flooded agroecosystem using the isotope pairing technique and nitrogen functional gene abundances Soil Science. 179: 2-10. DOI: 10.1097/Ss.0000000000000038  0.708
2014 Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Tackling soil diversity with the assembly of large, complex metagenomes (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 13, (4904-4909) doi:10.1073/pnas.1402564111) Proceedings of the National Academy of Sciences of the United States of America. 111: 6115. DOI: 10.1073/Pnas.1405719111  0.547
2014 Leigh MB, Wu WM, Cardenas E, Uhlik O, Carroll S, Gentry T, Marsh TL, Zhou J, Jardine P, Criddle CS, Tiedje JM. Microbial communities biostimulated by ethanol during uranium (VI) bioremediation in contaminated sediment as shown by stable isotope probing Frontiers of Environmental Science & Engineering. DOI: 10.1007/S11783-014-0721-6  0.485
2013 Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, ... ... Tiedje JM, et al. Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. Microbiome. 1: 9. PMID 24451366 DOI: 10.1186/2049-2618-1-9  0.306
2013 Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM. A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome. 1: 8. PMID 24451334 DOI: 10.1186/2049-2618-1-8  0.731
2013 Van Doan T, Lee TK, Shukla SK, Tiedje JM, Park J. Increased nitrous oxide accumulation by bioelectrochemical denitrification under autotrophic conditions: kinetics and expression of denitrification pathway genes. Water Research. 47: 7087-97. PMID 24210359 DOI: 10.1016/J.Watres.2013.08.041  0.324
2013 Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR. FunGene: the functional gene pipeline and repository. Frontiers in Microbiology. 4: 291. PMID 24101916 DOI: 10.3389/Fmicb.2013.00291  0.392
2013 Stres B, Sul WJ, Murovec B, Tiedje JM. Recently deglaciated high-altitude soils of the Himalaya: diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere. Plos One. 8: e76440. PMID 24086740 DOI: 10.1371/Journal.Pone.0076440  0.69
2013 Penton CR, Johnson TA, Quensen JF, Iwai S, Cole JR, Tiedje JM. Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter. Frontiers in Microbiology. 4: 279. PMID 24062736 DOI: 10.3389/Fmicb.2013.00279  0.774
2013 Wang Q, Quensen JF, Fish JA, Lee TK, Sun Y, Tiedje JM, Cole JR. Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. Mbio. 4: e00592-13. PMID 24045641 DOI: 10.1128/Mbio.00592-13  0.43
2013 Penton CR, St Louis D, Cole JR, Luo Y, Wu L, Schuur EA, Zhou J, Tiedje JM. Fungal diversity in permafrost and tallgrass prairie soils under experimental warming conditions. Applied and Environmental Microbiology. 79: 7063-72. PMID 24014534 DOI: 10.1128/Aem.01702-13  0.77
2013 Rhodes AN, Fulthorpe RR, Tiedje JM. Probing the functional diversity of global pristine soil communities with 3-chlorobenzoate reveals that communities of generalists dominate catabolic transformation. Applied and Environmental Microbiology. 79: 6932-40. PMID 23995940 DOI: 10.1128/Aem.01905-13  0.434
2013 Taketani RG, Lima AB, da Conceição Jesus E, Teixeira WG, Tiedje JM, Tsai SM. Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing. Antonie Van Leeuwenhoek. 104: 233-42. PMID 23743632 DOI: 10.1007/S10482-013-9942-0  0.416
2013 Hinsa-Leasure SM, Koid C, Tiedje JM, Schultzhaus JN. Biofilm formation by Psychrobacter arcticus and the role of a large adhesin in attachment to surfaces. Applied and Environmental Microbiology. 79: 3967-73. PMID 23603675 DOI: 10.1128/Aem.00867-13  0.31
2013 Rachid CT, Santos AL, Piccolo MC, Balieiro FC, Coutinho HL, Peixoto RS, Tiedje JM, Rosado AS. Effect of sugarcane burning or green harvest methods on the Brazilian Cerrado soil bacterial community structure. Plos One. 8: e59342. PMID 23533619 DOI: 10.1371/Journal.Pone.0059342  0.433
2013 Zhu YG, Johnson TA, Su JQ, Qiao M, Guo GX, Stedtfeld RD, Hashsham SA, Tiedje JM. Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proceedings of the National Academy of Sciences of the United States of America. 110: 3435-40. PMID 23401528 DOI: 10.1073/Pnas.1222743110  0.546
2013 Rodrigues JL, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SM, Feigl B, Tiedje JM, Bohannan BJ, Nüsslein K. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities. Proceedings of the National Academy of Sciences of the United States of America. 110: 988-93. PMID 23271810 DOI: 10.1073/Pnas.1220608110  0.617
2013 Sul WJ, Asuming-Brempong S, Wang Q, Tourlousse DM, Penton CR, Deng Y, Rodrigues JLM, Adiku SGK, Jones JW, Zhou J, Cole JR, Tiedje JM. Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon Soil Biology and Biochemistry. 65: 33-38. DOI: 10.1016/J.Soilbio.2013.05.007  0.813
2013 Penton CR, Deenik JL, Popp BN, Bruland GL, Engstrom P, St. Louis D, Tiedje J. Importance of sub-surface rhizosphere-mediated coupled nitrification-denitrification in a flooded agroecosystem in Hawaii Soil Biology and Biochemistry. 57: 362-373. DOI: 10.1016/J.Soilbio.2012.10.018  0.675
2013 Liang C, Duncan DS, Balser TC, Tiedje JM, Jackson RD. Soil microbial residue storage linked to soil legacy under biofuel cropping systems in southern Wisconsin, USA Soil Biology and Biochemistry. 57: 939-942. DOI: 10.1016/J.Soilbio.2012.09.006  0.779
2012 Rosenzweig N, Tiedje JM, Quensen JF, Meng Q, Hao JJ. Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses. Plant Disease. 96: 718-725. PMID 30727523 DOI: 10.1094/Pdis-07-11-0571  0.411
2012 Ormeño-Orrillo E, Rogel MA, Chueire LM, Tiedje JM, Martínez-Romero E, Hungria M. Genome sequences of Burkholderia sp. strains CCGE1002 and H160, isolated from legume nodules in Mexico and Brazil. Journal of Bacteriology. 194: 6927. PMID 23209196 DOI: 10.1128/Jb.01756-12  0.34
2012 Oh S, Buddenborg S, Yoder-Himes DR, Tiedje JM, Konstantinidis KT. Genomic diversity of Escherichia isolates from diverse habitats. Plos One. 7: e47005. PMID 23056556 DOI: 10.1371/Journal.Pone.0047005  0.586
2012 He R, Wooller MJ, Pohlman JW, Quensen J, Tiedje JM, Leigh MB. Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes. Applied and Environmental Microbiology. 78: 4715-23. PMID 22522690 DOI: 10.1128/Aem.00853-12  0.322
2012 He R, Wooller MJ, Pohlman JW, Catranis C, Quensen J, Tiedje JM, Leigh MB. Identification of functionally active aerobic methanotrophs in sediments from an arctic lake using stable isotope probing. Environmental Microbiology. 14: 1403-19. PMID 22429394 DOI: 10.1111/J.1462-2920.2012.02725.X  0.324
2012 Caro-Quintero A, Auchtung J, Deng J, Brettar I, Höfle M, Tiedje JM, Konstantinidis KT. Genome sequencing of five Shewanella baltica strains recovered from the oxic-anoxic interface of the Baltic Sea. Journal of Bacteriology. 194: 1236. PMID 22328742 DOI: 10.1128/Jb.06468-11  0.622
2012 Li R, Tiedje JM, Chiu C, Worden RM. Soluble electron shuttles can mediate energy taxis toward insoluble electron acceptors. Environmental Science & Technology. 46: 2813-20. PMID 22324484 DOI: 10.1021/Es204302W  0.343
2012 Kim SH, Harzman C, Davis JK, Hutcheson R, Broderick JB, Marsh TL, Tiedje JM. Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction. Bmc Microbiology. 12: 21. PMID 22316246 DOI: 10.1186/1471-2180-12-21  0.789
2012 Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB. In-feed antibiotic effects on the swine intestinal microbiome. Proceedings of the National Academy of Sciences of the United States of America. 109: 1691-6. PMID 22307632 DOI: 10.1073/Pnas.1120238109  0.712
2012 Green SJ, Prakash O, Jasrotia P, Overholt WA, Cardenas E, Hubbard D, Tiedje JM, Watson DB, Schadt CW, Brooks SC, Kostka JE. Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Applied and Environmental Microbiology. 78: 1039-47. PMID 22179233 DOI: 10.1128/Aem.06435-11  0.399
2012 Liang C, Jesus EdC, Duncan DS, Jackson RD, Tiedje JM, Balser TC. Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: Impact of crop species and soil properties Applied Soil Ecology. 54: 24-31. DOI: 10.1016/J.Apsoil.2011.11.015  0.793
2011 Sul WJ, Cole JR, Jesus Eda C, Wang Q, Farris RJ, Fish JA, Tiedje JM. Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proceedings of the National Academy of Sciences of the United States of America. 108: 14637-42. PMID 21873204 DOI: 10.1073/Pnas.1111435108  0.673
2011 Rodrigues JL, Serres MH, Tiedje JM. Large-scale comparative phenotypic and genomic analyses reveal ecological preferences of shewanella species and identify metabolic pathways conserved at the genus level. Applied and Environmental Microbiology. 77: 5352-60. PMID 21642407 DOI: 10.1128/Aem.00097-11  0.606
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Tiedje JM, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823  0.68
2011 Patrauchan MA, Parnell JJ, McLeod MP, Florizone C, Tiedje JM, Eltis LD. Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400. Archives of Microbiology. 193: 641-50. PMID 21519854 DOI: 10.1007/S00203-011-0705-X  0.634
2011 Van Nostrand JD, Wu L, Wu WM, Huang Z, Gentry TJ, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, ... Tiedje JM, et al. Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer. Applied and Environmental Microbiology. 77: 3860-9. PMID 21498771 DOI: 10.1128/Aem.01981-10  0.491
2011 Iwai S, Johnson TA, Chai B, Hashsham SA, Tiedje JM. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Applied and Environmental Microbiology. 77: 3551-7. PMID 21498766 DOI: 10.1128/Aem.00331-11  0.557
2011 Lee TK, Lee J, Sul WJ, Iwai S, Chai B, Tiedje JM, Park J. Novel biphenyl-oxidizing bacteria and dioxygenase genes from a korean tidal mudflat. Applied and Environmental Microbiology. 77: 3888-91. PMID 21498748 DOI: 10.1128/Aem.00023-11  0.679
2011 Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, Konstantinidis KT. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proceedings of the National Academy of Sciences of the United States of America. 108: 7200-5. PMID 21482770 DOI: 10.1073/Pnas.1015622108  0.566
2011 Vishnivetskaya TA, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce DC, Goodwin LA, Pitluck S, Saunders E, Brettin T, Detter C, Han C, Larimer F, ... ... Tiedje JM, et al. Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b. Journal of Bacteriology. 193: 2880-1. PMID 21460088 DOI: 10.1128/Jb.00303-11  0.611
2011 Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM. Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1. Bmc Microbiology. 11: 64. PMID 21450087 DOI: 10.1186/1471-2180-11-64  0.796
2011 Li R, Auchtung JM, Tiedje JM, Worden RM. Shewanella oneidensis MR-1 chemotaxis in a diffusion gradient chamber. Environmental Science & Technology. 45: 1014-20. PMID 21174460 DOI: 10.1021/Es102425P  0.356
2011 Cardenas E, Cole JR, Tiedje JM, Park J. Microbial community analysis using RDP II (ribosomal database project II): Methods, tools and new advances Environmental Engineering Research. 16: 3-9. DOI: 10.4491/Eer.2009.14.1.003  0.409
2011 Mueller RC, Nüsslein K, Rodrigues J, Tiedje J, Pellizari V, Feigl B, Bohannan B. Microbial responses to changes in land use Nature Precedings. 6: 1-1. DOI: 10.1038/Npre.2011.5505.1  0.522
2011 Iwai S, Chai B, Jesus EdC, Penton CR, Lee TK, Cole JR, Tiedje JM. Gene-Targeted Metagenomics (GT Metagenomics) to Explore the Extensive Diversity of Genes of Interest in Microbial Communities Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 235-243. DOI: 10.1002/9781118010518.ch28  0.696
2010 Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, et al. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Standards in Genomic Sciences. 3: 249-53. PMID 21304728 DOI: 10.4056/Aigs.1443528  0.544
2010 Gao H, Barua S, Liang Y, Wu L, Dong Y, Reed S, Chen J, Culley D, Kennedy D, Yang Y, He Z, Nealson KH, Fredrickson JK, Tiedje JM, Romine M, et al. Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration. Microbial Biotechnology. 3: 455-66. PMID 21255343 DOI: 10.1111/J.1751-7915.2010.00181.X  0.462
2010 Stres B, Philippot L, Faganeli J, Tiedje JM. Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment. Fems Microbiology Ecology. 74: 323-35. PMID 20735477 DOI: 10.1111/J.1574-6941.2010.00951.X  0.401
2010 Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, ... Tiedje JM, et al. Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach. Applied and Environmental Microbiology. 76: 6778-86. PMID 20729318 DOI: 10.1128/Aem.01097-10  0.498
2010 Hinsa-Leasure SM, Bhavaraju L, Rodrigues JL, Bakermans C, Gilichinsky DA, Tiedje JM. Characterization of a bacterial community from a Northeast Siberian seacoast permafrost sample. Fems Microbiology Ecology. 74: 103-13. PMID 20695892 DOI: 10.1111/J.1574-6941.2010.00945.X  0.622
2010 Teixeira LC, Peixoto RS, Cury JC, Sul WJ, Pellizari VH, Tiedje J, Rosado AS. Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica. The Isme Journal. 4: 989-1001. PMID 20357834 DOI: 10.1038/Ismej.2010.35  0.7
2010 Xu M, Wu WM, Wu L, He Z, Van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu B, Watson D, Jardine PM, Marsh TL, Tiedje JM, et al. Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation. The Isme Journal. 4: 1060-70. PMID 20237512 DOI: 10.1038/Ismej.2010.31  0.525
2010 Oh S, Yoder-Himes DR, Tiedje J, Park J, Konstantinidis KT. Evaluating the performance of oligonucleotide microarrays for bacterial strains with increasing genetic divergence from the reference strain. Applied and Environmental Microbiology. 76: 2980-8. PMID 20228107 DOI: 10.1128/Aem.02826-09  0.562
2010 Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu L, Barua S, Barry K, Tringe SG, Watson DB, He Z, Hazen TC, Tiedje JM, Rubin EM, Zhou J. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. The Isme Journal. 4: 660-72. PMID 20182523 DOI: 10.1038/Ismej.2009.154  0.532
2010 Ayala-del-Río HL, Chain PS, Grzymski JJ, Ponder MA, Ivanova N, Bergholz PW, Di Bartolo G, Hauser L, Land M, Bakermans C, Rodrigues D, Klappenbach J, Zarka D, Larimer F, Richardson P, ... ... Tiedje JM, et al. The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth. Applied and Environmental Microbiology. 76: 2304-12. PMID 20154119 DOI: 10.1128/Aem.02101-09  0.788
2010 Yoder-Himes DR, Konstantinidis KT, Tiedje JM. Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics. Plos One. 5: e8724. PMID 20090946 DOI: 10.1371/Journal.Pone.0008724  0.603
2010 Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. The Isme Journal. 4: 279-85. PMID 19776767 DOI: 10.1038/Ismej.2009.104  0.677
2010 Parnell JJ, Denef VJ, Park J, Tsoi T, Tiedje JM. Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400. Biodegradation. 21: 147-56. PMID 19672561 DOI: 10.1007/S10532-009-9289-4  0.613
2010 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Tiedje JM, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1  0.557
2010 da Jesus EC, Susilawati E, Smith SL, Wang Q, Chai B, Farris R, Rodrigues JLM, Thelen KD, Tiedje JM. Bacterial communities in the rhizosphere of biofuel crops grown on marginal lands as evaluated by 16S rRNA gene pyrosequences Bioenergy Research. 3: 20-27. DOI: 10.1007/S12155-009-9073-7  0.438
2009 Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, ... ... Tiedje JM, et al. Genomics. Genome project standards in a new era of sequencing. Science (New York, N.Y.). 326: 236-7. PMID 19815760 DOI: 10.1126/Science.1180614  0.533
2009 Konstantinidis KT, Serres MH, Romine MF, Rodrigues JL, Auchtung J, McCue LA, Lipton MS, Obraztsova A, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proceedings of the National Academy of Sciences of the United States of America. 106: 15909-14. PMID 19805231 DOI: 10.1073/Pnas.0902000106  0.689
2009 Walk ST, Alm EW, Gordon DM, Ram JL, Toranzos GA, Tiedje JM, Whittam TS. Cryptic lineages of the genus Escherichia. Applied and Environmental Microbiology. 75: 6534-44. PMID 19700542 DOI: 10.1128/Aem.01262-09  0.309
2009 Sul WJ, Park J, Quensen JF, Rodrigues JL, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Applied and Environmental Microbiology. 75: 5501-6. PMID 19648381 DOI: 10.1128/Aem.00121-09  0.753
2009 Van Nostrand JD, Wu WM, Wu L, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, et al. GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. Environmental Microbiology. 11: 2611-26. PMID 19624708 DOI: 10.1111/J.1462-2920.2009.01986.X  0.51
2009 Rodríguez-Minguela CM, Apajalahti JH, Chai B, Cole JR, Tiedje JM. Worldwide prevalence of class 2 integrases outside the clinical setting is associated with human impact. Applied and Environmental Microbiology. 75: 5100-10. PMID 19502434 DOI: 10.1128/Aem.00133-09  0.381
2009 da C Jesus E, Marsh TL, Tiedje JM, de S Moreira FM. Changes in land use alter the structure of bacterial communities in Western Amazon soils. The Isme Journal. 3: 1004-11. PMID 19440233 DOI: 10.1038/Ismej.2009.47  0.406
2009 Gao H, Yang ZK, Barua S, Reed SB, Romine MF, Nealson KH, Fredrickson JK, Tiedje JM, Zhou J. Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. The Isme Journal. 3: 966-76. PMID 19387485 DOI: 10.1038/Ismej.2009.40  0.483
2009 Vishnivetskaya TA, Kathariou S, Tiedje JM. The Exiguobacterium genus: biodiversity and biogeography. Extremophiles : Life Under Extreme Conditions. 13: 541-55. PMID 19381755 DOI: 10.1007/S00792-009-0243-5  0.381
2009 Stres B, Tiedje JM, Murovec B. BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases. Bioinformatics (Oxford, England). 25: 1556-8. PMID 19369501 DOI: 10.1093/Bioinformatics/Btp254  0.306
2009 Rodrigues DF, da C Jesus E, Ayala-Del-Río HL, Pellizari VH, Gilichinsky D, Sepulveda-Torres L, Tiedje JM. Biogeography of two cold-adapted genera: Psychrobacter and Exiguobacterium. The Isme Journal. 3: 658-65. PMID 19322243 DOI: 10.1038/Ismej.2009.25  0.799
2009 Yoder-Himes DR, Chain PS, Zhu Y, Wurtzel O, Rubin EM, Tiedje JM, Sorek R. Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3976-81. PMID 19234113 DOI: 10.1073/Pnas.0813403106  0.618
2009 Ramette A, Tiedje JM, Boetius A. Impact of space, time and complex environments on microbial communities. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. 15: 60-2. PMID 19220358 DOI: 10.1111/J.1469-0691.2008.02692.X  0.32
2009 Bergholz PW, Bakermans C, Tiedje JM. Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth. Journal of Bacteriology. 191: 2340-52. PMID 19168616 DOI: 10.1128/Jb.01377-08  0.752
2009 Bakermans C, Sloup RE, Zarka DG, Tiedje JM, Thomashow MF. Development and use of genetic system to identify genes required for efficient low-temperature growth of Psychrobacter arcticus 273-4. Extremophiles : Life Under Extreme Conditions. 13: 21-30. PMID 18818866 DOI: 10.1007/S00792-008-0193-3  0.3
2009 Vogel TM, Simonet P, Hirsch PR, Jansson JK, Tiedje JM, van Elsas JD, Nalin R, Philippot L, Bailey MJ. Advantages of the metagenomic approach for soil exploration: Reply from Vogel et al. Nature Reviews Microbiology. 7: 756-757. DOI: 10.1038/Nrmicro2119-C3  0.599
2009 Vogel TM, Simonet P, Jansson JK, Hirsch PR, Tiedje JM, van Elsas JD, Bailey MJ, Nalin R, Philippot L. TerraGenome: A consortium for the sequencing of a soil metagenome Nature Reviews Microbiology. 7: 252. DOI: 10.1038/Nrmicro2119  0.598
2009 da C Jesus E, Marsh TL, Tiedje JM, de S Moreira FM. Erratum: Changes in land use alter the structure of bacterial communities in Western Amazon soils The Isme Journal. 3: 1222-1222. DOI: 10.1038/Ismej.2009.98  0.381
2008 Rodrigues DF, Ivanova N, He Z, Huebner M, Zhou J, Tiedje JM. Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. Bmc Genomics. 9: 547. PMID 19019206 DOI: 10.1186/1471-2164-9-547  0.668
2008 Cardenas E, Tiedje JM. New tools for discovering and characterizing microbial diversity. Current Opinion in Biotechnology. 19: 544-9. PMID 18984052 DOI: 10.1016/J.Copbio.2008.10.010  0.383
2008 Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, ... ... Tiedje JM, et al. Towards environmental systems biology of Shewanella. Nature Reviews. Microbiology. 6: 592-603. PMID 18604222 DOI: 10.1038/Nrmicro1947  0.561
2008 Wu L, Kellogg L, Devol AH, Tiedje JM, Zhou J. Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico. Applied and Environmental Microbiology. 74: 4516-29. PMID 18515485 DOI: 10.1128/Aem.02751-07  0.534
2008 Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, ... Tiedje JM, et al. Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels. Applied and Environmental Microbiology. 74: 3718-29. PMID 18456853 DOI: 10.1128/Aem.02308-07  0.518
2008 Stedtfeld RD, Baushke SW, Tourlousse DM, Miller SM, Stedtfeld TM, Gulari E, Tiedje JM, Hashsham SA. Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray platform. Applied and Environmental Microbiology. 74: 3831-8. PMID 18424532 DOI: 10.1128/Aem.02743-07  0.319
2008 Ponder MA, Thomashow MF, Tiedje JM. Metabolic activity of Siberian permafrost isolates, Psychrobacter arcticus and Exiguobacterium sibiricum, at low water activities. Extremophiles : Life Under Extreme Conditions. 12: 481-90. PMID 18335164 DOI: 10.1007/S00792-008-0151-0  0.636
2008 Wu L, Liu X, Fields MW, Thompson DK, Bagwell CE, Tiedje JM, Hazen TC, Zhou J. Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness. The Isme Journal. 2: 642-55. PMID 18309358 DOI: 10.1038/Ismej.2008.23  0.481
2008 Miller SM, Tourlousse DM, Stedtfeld RD, Baushke SW, Herzog AB, Wick LM, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA. In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water. Applied and Environmental Microbiology. 74: 2200-9. PMID 18245235 DOI: 10.1128/Aem.01962-07  0.312
2008 Rodrigues DF, Tiedje JM. Coping with our cold planet. Applied and Environmental Microbiology. 74: 1677-86. PMID 18203855 DOI: 10.1128/Aem.02000-07  0.57
2008 Asuming-Brempong S, Gantner S, Adiku SGK, Archer G, Edusei V, Tiedje JM. Changes in the biodiversity of microbial populations in tropical soils under different fallow treatments Soil Biology and Biochemistry. 40: 2811-2818. DOI: 10.1016/J.Soilbio.2008.08.010  0.367
2007 Leigh MB, Pellizari VH, Uhlík O, Sutka R, Rodrigues J, Ostrom NE, Zhou J, Tiedje JM. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs) Isme Journal. 1: 134-148. PMID 18043623 DOI: 10.1038/Ismej.2007.26  0.694
2007 Konstantinidis KT, Tiedje JM. Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Current Opinion in Microbiology. 10: 504-9. PMID 17923431 DOI: 10.1016/J.Mib.2007.08.006  0.549
2007 Hansen AA, Herbert RA, Mikkelsen K, Jensen LL, Kristoffersen T, Tiedje JM, Lomstein BA, Finster KW. Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway. Environmental Microbiology. 9: 2870-84. PMID 17922769 DOI: 10.1111/J.1462-2920.2007.01403.X  0.428
2007 Wu WM, Carley J, Luo J, Ginder-Vogel MA, Cardenas E, Leigh MB, Hwang C, Kelly SD, Ruan C, Wu L, Van Nostrand J, Gentry T, Lowe K, Mehlhorn T, Carroll S, ... ... Tiedje J, et al. In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen. Environmental Science & Technology. 41: 5716-23. PMID 17874778 DOI: 10.1021/Es062657B  0.452
2007 Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology. 73: 5261-7. PMID 17586664 DOI: 10.1128/Aem.00062-07  0.337
2007 Smith DJ, Park J, Tiedje JM, Mohn WW. A large gene cluster in Burkholderia xenovorans encoding abietane diterpenoid catabolism. Journal of Bacteriology. 189: 6195-204. PMID 17586638 DOI: 10.1128/Jb.00179-07  0.378
2007 Gilichinsky DA, Wilson GS, Friedmann EI, McKay CP, Sletten RS, Rivkina EM, Vishnivetskaya TA, Erokhina LG, Ivanushkina NE, Kochkina GA, Shcherbakova VA, Soina VS, Spirina EV, Vorobyova EA, Fyodorov-Davydov DG, ... ... Tiedje JM, et al. Microbial populations in Antarctic permafrost: biodiversity, state, age, and implication for astrobiology. Astrobiology. 7: 275-311. PMID 17480161 DOI: 10.1089/Ast.2006.0012  0.371
2007 Vishnivetskaya TA, Siletzky R, Jefferies N, Tiedje JM, Kathariou S. Effect of low temperature and culture media on the growth and freeze-thawing tolerance of Exiguobacterium strains. Cryobiology. 54: 234-40. PMID 17382311 DOI: 10.1016/J.Cryobiol.2007.01.008  0.331
2007 O'Sullivan LA, Weightman AJ, Jones TH, Marchbank AM, Tiedje JM, Mahenthiralingam E. Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. Environmental Microbiology. 9: 1017-34. PMID 17359273 DOI: 10.1111/J.1462-2920.2006.01228.X  0.311
2007 Ramette A, Tiedje JM. Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proceedings of the National Academy of Sciences of the United States of America. 104: 2761-6. PMID 17296935 DOI: 10.1073/Pnas.0610671104  0.34
2007 Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. International Journal of Systematic and Evolutionary Microbiology. 57: 81-91. PMID 17220447 DOI: 10.1099/Ijs.0.64483-0  0.573
2007 Zheng S, Ponder MA, Shih JY, Tiedje JM, Thomashow MF, Lubman DM. A proteomic analysis of Psychrobacter articus 273-4 adaptation to low temperature and salinity using a 2-D liquid mapping approach. Electrophoresis. 28: 467-88. PMID 17177241 DOI: 10.1002/Elps.200600173  0.622
2007 Rodrigues DF, Tiedje JM. Multi-locus real-time PCR for quantitation of bacteria in the environment reveals Exiguobacterium to be prevalent in permafrost. Fems Microbiology Ecology. 59: 489-99. PMID 17156079 DOI: 10.1111/J.1574-6941.2006.00233.X  0.65
2007 Cruz-García C, Murray AE, Klappenbach JA, Stewart V, Tiedje JM. Respiratory nitrate ammonification by Shewanella oneidensis MR-1. Journal of Bacteriology. 189: 656-62. PMID 17098906 DOI: 10.1128/Jb.01194-06  0.784
2007 Griffin BM, Tiedje JM. Microbial reductive dehalogenation in Antarctic melt pond sediments Antarctic Science. 19: 411-416. DOI: 10.1017/S0954102007000570  0.684
2006 Konstantinidis KT, Ramette A, Tiedje JM. The bacterial species definition in the genomic era. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1929-40. PMID 17062412 DOI: 10.1098/Rstb.2006.1920  0.571
2006 Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, ... ... Tiedje JM, et al. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences of the United States of America. 103: 15280-7. PMID 17030797 DOI: 10.1073/Pnas.0606924103  0.804
2006 Penton CR, Devol AH, Tiedje JM. Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Applied and Environmental Microbiology. 72: 6829-32. PMID 17021238 DOI: 10.1128/Aem.01254-06  0.729
2006 Parnell JJ, Park J, Denef V, Tsoi T, Hashsham S, Quensen J, Tiedje JM. Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress. Applied and Environmental Microbiology. 72: 6607-14. PMID 17021212 DOI: 10.1128/Aem.01129-06  0.618
2006 Konstantinidis KT, Ramette A, Tiedje JM. Toward a more robust assessment of intraspecies diversity, using fewer genetic markers. Applied and Environmental Microbiology. 72: 7286-93. PMID 16980418 DOI: 10.1128/Aem.01398-06  0.594
2006 Gao H, Obraztova A, Stewart N, Popa R, Fredrickson JK, Tiedje JM, Nealson KH, Zhou J. Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. International Journal of Systematic and Evolutionary Microbiology. 56: 1911-6. PMID 16902030 DOI: 10.1099/Ijs.0.64354-0  0.495
2006 Vishnivetskaya TA, Petrova MA, Urbance J, Ponder M, Moyer CL, Gilichinsky DA, Tiedje JM. Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods. Astrobiology. 6: 400-14. PMID 16805696 DOI: 10.1089/Ast.2006.6.400  0.684
2006 Bakermans C, Ayala-del-Río HL, Ponder MA, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM. Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. International Journal of Systematic and Evolutionary Microbiology. 56: 1285-91. PMID 16738105 DOI: 10.1099/Ijs.0.64043-0  0.781
2006 Payne GW, Ramette A, Rose HL, Weightman AJ, Jones TH, Tiedje JM, Mahenthiralingam E. Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species. Fems Microbiology Letters. 259: 126-32. PMID 16684112 DOI: 10.1111/J.1574-6968.2006.00257.X  0.357
2006 Rodrigues JL, Kachel CA, Aiello MR, Quensen JF, Maltseva OV, Tsoi TV, Tiedje JM. Degradation of aroclor 1242 dechlorination products in sediments by Burkholderia xenovorans LB400(ohb) and Rhodococcus sp. strain RHA1(fcb). Applied and Environmental Microbiology. 72: 2476-82. PMID 16597946 DOI: 10.1128/Aem.72.4.2476-2482.2006  0.555
2006 Rodrigues DF, Goris J, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM. Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles : Life Under Extreme Conditions. 10: 285-94. PMID 16489412 DOI: 10.1007/S00792-005-0497-5  0.615
2006 Qiu X, Daly MJ, Vasilenko A, Omelchenko MV, Gaidamakova EK, Wu L, Zhou J, Sundin GW, Tiedje JM. Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation. Journal of Bacteriology. 188: 1199-204. PMID 16428429 DOI: 10.1128/Jb.188.3.1199-1204.2006  0.745
2006 Denef VJ, Klappenbach JA, Patrauchan MA, Florizone C, Rodrigues JL, Tsoi TV, Verstraete W, Eltis LD, Tiedje JM. Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Applied and Environmental Microbiology. 72: 585-95. PMID 16391095 DOI: 10.1128/AEM.72.1.585-595.2006  0.477
2005 Gilichinsky D, Rivkina E, Bakermans C, Shcherbakova V, Petrovskaya L, Ozerskaya S, Ivanushkina N, Kochkina G, Laurinavichuis K, Pecheritsina S, Fattakhova R, Tiedje JM. Biodiversity of cryopegs in permafrost. Fems Microbiology Ecology. 53: 117-28. PMID 16329934 DOI: 10.1016/J.Femsec.2005.02.003  0.353
2005 Ponder MA, Gilmour SJ, Bergholz PW, Mindock CA, Hollingsworth R, Thomashow MF, Tiedje JM. Characterization of potential stress responses in ancient Siberian permafrost psychroactive bacteria. Fems Microbiology Ecology. 53: 103-15. PMID 16329933 DOI: 10.1016/J.Femsec.2004.12.003  0.788
2005 Denef VJ, Patrauchan MA, Florizone C, Park J, Tsoi TV, Verstraete W, Tiedje JM, Eltis LD. Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400. Journal of Bacteriology. 187: 7996-8005. PMID 16291673 DOI: 10.1128/Jb.187.23.7996-8005.2005  0.302
2005 Beliaev AS, Klingeman DM, Klappenbach JA, Wu L, Romine MF, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J. Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors. Journal of Bacteriology. 187: 7138-45. PMID 16199584 DOI: 10.1128/Jb.187.20.7138-7145.2005  0.464
2005 Konstantinidis KT, Tiedje JM. Towards a genome-based taxonomy for prokaryotes. Journal of Bacteriology. 187: 6258-64. PMID 16159757 DOI: 10.1128/Jb.187.18.6258-6264.2005  0.591
2005 Etchebehere C, Tiedje J. Presence of two different active nirS nitrite reductase genes in a denitrifying Thauera sp. from a high-nitrate-removal-rate reactor. Applied and Environmental Microbiology. 71: 5642-5. PMID 16151169 DOI: 10.1128/Aem.71.9.5642-5645.2005  0.369
2005 Qiu X, Tiedje JM, Sundin GW. Genome-wide examination of the natural solar radiation response in Shewanella oneidensis MR-1. Photochemistry and Photobiology. 81: 1559-68. PMID 16022560 DOI: 10.1562/2005-04-15-Ra-490  0.704
2005 Qiu X, Sundin GW, Wu L, Zhou J, Tiedje JM. Comparative analysis of differentially expressed genes in Shewanella oneidensis MR-1 following exposure to UVC, UVB, and UVA radiation. Journal of Bacteriology. 187: 3556-64. PMID 15866945 DOI: 10.1128/Jb.187.10.3556-3564.2005  0.732
2005 Rivkina E, Laurinavichius K, McGrath J, Tiedje J, Shcherbakova V, Gilichinsky D. Microbial life in permafrost. Advances in Space Research : the Official Journal of the Committee On Space Research (Cospar). 33: 1215-21. PMID 15806703 DOI: 10.1016/J.Asr.2003.06.024  0.334
2005 Ramette A, LiPuma JJ, Tiedje JM. Species abundance and diversity of Burkholderia cepacia complex in the environment. Applied and Environmental Microbiology. 71: 1193-201. PMID 15746318 DOI: 10.1128/Aem.71.3.1193-1201.2005  0.302
2005 Konstantinidis KT, Tiedje JM. Genomic insights that advance the species definition for prokaryotes. Proceedings of the National Academy of Sciences of the United States of America. 102: 2567-72. PMID 15701695 DOI: 10.1073/Pnas.0409727102  0.576
2005 Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, ... ... Tiedje JM, et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proceedings of the National Academy of Sciences of the United States of America. 102: 2099-104. PMID 15684069 DOI: 10.1073/Pnas.0409111102  0.797
2005 Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Research. 33: D294-6. PMID 15608200 DOI: 10.1093/Nar/Gki038  0.313
2004 Wu L, Thompson DK, Liu X, Fields MW, Bagwell CE, Tiedje JM, Zhou J. Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications. Environmental Science & Technology. 38: 6775-82. PMID 15669338 DOI: 10.1021/Es049508I  0.531
2004 Qiu X, Sundin GW, Chai B, Tiedje JM. Survival of Shewanella oneidensis MR-1 after UV radiation exposure. Applied and Environmental Microbiology. 70: 6435-43. PMID 15528503 DOI: 10.1128/Aem.70.11.6435-6443.2004  0.697
2004 Goris J, De Vos P, Caballero-Mellado J, Park J, Falsen E, Quensen JF, Tiedje JM, Vandamme P. Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov. International Journal of Systematic and Evolutionary Microbiology. 54: 1677-81. PMID 15388727 DOI: 10.1099/Ijs.0.63101-0  0.319
2004 Griffin BM, Tiedje JM, Löffler FE. Anaerobic microbial reductive dechlorination of tetrachloroethene to predominately trans-1,2-dichloroethene. Environmental Science & Technology. 38: 4300-3. PMID 15382856 DOI: 10.1021/Es035439G  0.675
2004 Qiu XY, Hurt RA, Wu LY, Chen CH, Tiedje JM, Zhou JZ. Detection and quantification of copper-denitrifying bacteria by quantitative competitive PCR. Journal of Microbiological Methods. 59: 199-210. PMID 15369856 DOI: 10.1016/J.Mimet.2004.07.008  0.397
2004 Ayala-Del-Río HL, Callister SJ, Criddle CS, Tiedje JM. Correspondence between community structure and function during succession in phenol- and phenol-plus-trichloroethene-fed sequencing batch reactors. Applied and Environmental Microbiology. 70: 4950-60. PMID 15294835 DOI: 10.1128/Aem.70.8.4950-4960.2004  0.792
2004 Zhou J, Xia B, Huang H, Palumbo AV, Tiedje JM. Microbial diversity and heterogeneity in sandy subsurface soils. Applied and Environmental Microbiology. 70: 1723-34. PMID 15006798 DOI: 10.1128/Aem.70.3.1723-1734.2004  0.524
2004 Konstantinidis KT, Tiedje JM. Trends between gene content and genome size in prokaryotic species with larger genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 3160-5. PMID 14973198 DOI: 10.1073/Pnas.0308653100  0.563
2004 Stres B, Mahne I, Avgustin G, Tiedje JM. Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Applied and Environmental Microbiology. 70: 301-9. PMID 14711656 DOI: 10.1128/Aem.70.1.301-309.2004  0.416
2004 Gilichinsky D, Rivkina E, Shcherbakova V, Laurinavichuis K, Tiedje J. Supercooled water brines within permafrost-an unknown ecological niche for microorganisms: a model for astrobiology. Astrobiology. 3: 331-41. PMID 14577882 DOI: 10.1089/153110703769016424  0.334
2003 Dollhopf SL, Pariseau ML, Hashsham SA, Tiedje JM. Competitive and interactions affecting a fermentative spirochete in anaerobic chemostats. Microbial Ecology. 46: 1-11. PMID 14582492  0.772
2003 Denef VJ, Park J, Rodrigues JL, Tsoi TV, Hashsham SA, Tiedje JM. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environmental Microbiology. 5: 933-43. PMID 14510847 DOI: 10.1046/J.1462-2920.2003.00490.X  0.616
2003 Dorofeeva LV, Krausova VI, Evtushenko LI, Tiedje JM. Agromyces albus sp. nov., isolated from a plant (Androsace sp.). International Journal of Systematic and Evolutionary Microbiology. 53: 1435-8. PMID 13130029 DOI: 10.1099/Ijs.0.02428-0  0.318
2003 Liu X, Tiquia SM, Holguin G, Wu L, Nold SC, Devol AH, Luo K, Palumbo AV, Tiedje JM, Zhou J. Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico. Applied and Environmental Microbiology. 69: 3549-60. PMID 12788762 DOI: 10.1128/Aem.69.6.3549-3560.2003  0.527
2003 Braker G, Tiedje JM. Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Applied and Environmental Microbiology. 69: 3476-83. PMID 12788753 DOI: 10.1128/Aem.69.6.3476-3483.2003  0.384
2003 Sung Y, Ritalahti KM, Sanford RA, Urbance JW, Flynn SJ, Tiedje JM, Löffler FE. Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov. Applied and Environmental Microbiology. 69: 2964-74. PMID 12732573 DOI: 10.1128/Aem.69.5.2964-2974.2003  0.596
2003 Yan T, Fields MW, Wu L, Zu Y, Tiedje JM, Zhou J. Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environmental Microbiology. 5: 13-24. PMID 12542709 DOI: 10.1046/J.1462-2920.2003.00393.X  0.527
2003 Treves DS, Xia B, Zhou J, Tiedje JM. A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil Microbial Ecology. 45: 20-28. PMID 12415419 DOI: 10.1007/S00248-002-1044-X  0.53
2003 Lendvay JM, Löffler FE, Dollhopf M, Aiello MR, Daniels G, Fathepure BZ, Gebhard M, Heine R, Helton R, Shi J, Krajmalnik-Brown R, Major CL, Barcelona MJ, Petrovskis E, Hickey R, ... Tiedje JM, et al. Bioreactive barriers: A comparison of bioaugmentation and biostimulation for chlorinated solvent remediation Environmental Science and Technology. 37: 1422-1431. DOI: 10.1021/Es025985U  0.32
2003 Zhou J, Xia B, Huang H, Treves DS, Hauser LJ, Mural RJ, Palumbo AV, Tiedje JM. Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils Soil Biology and Biochemistry. 35: 915-924. DOI: 10.1016/S0038-0717(03)00124-X  0.553
2003 Dollhopf SL, Pariseau ML, Hashsham SA, Tiedje JM. Competitive and Cooperative Interactions Affecting a Fermentative Spirochete in Anaerobic Chemostats Microbial Ecology. 46: 1-11. DOI: 10.1007/Pl00021035  0.773
2002 Sun B, Griffin BM, Ayala-del-Río HL, Hashsham SA, Tiedje JM. Microbial dehalorespiration with 1,1,1-trichloroethane. Science (New York, N.Y.). 298: 1023-5. PMID 12411705 DOI: 10.1126/Science.1074675  0.787
2002 Rodrigues JL, Aiello MR, Urbance JW, Tsoi TV, Tiedje JM. Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil. Journal of Microbiological Methods. 51: 181-9. PMID 12133610 DOI: 10.1016/S0167-7012(02)00067-2  0.599
2002 Itoh K, Kanda R, Sumita Y, Kim H, Kamagata Y, Suyama K, Yamamoto H, Hausinger RP, Tiedje JM. tfdA-like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in alpha-Proteobacteria. Applied and Environmental Microbiology. 68: 3449-54. PMID 12089027 DOI: 10.1128/Aem.68.7.3449-3454.2002  0.329
2002 Priemé A, Braker G, Tiedje JM. Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Applied and Environmental Microbiology. 68: 1893-900. PMID 11916709 DOI: 10.1128/Aem.68.4.1893-1900.2002  0.42
2002 Beliaev AS, Thompson DK, Khare T, Lim H, Brandt CC, Li G, Murray AE, Heidelberg JF, Giometti CS, Yates J, Nealson KH, Tiedje JM, Zhoui J. Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors. Omics : a Journal of Integrative Biology. 6: 39-60. PMID 11881834 DOI: 10.1089/15362310252780834  0.339
2002 Dedysh SN, Khmelenina VN, Suzina NE, Trotsenko YA, Semrau JD, Liesack W, Tiedje JM. Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. International Journal of Systematic and Evolutionary Microbiology. 52: 251-61. PMID 11837310 DOI: 10.1099/00207713-52-1-251  0.331
2002 Sanford RA, Cole JR, Tiedje JM. Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Applied and Environmental Microbiology. 68: 893-900. PMID 11823233 DOI: 10.1128/Aem.68.2.893-900.2002  0.591
2002 Thompson DK, Beliaev AS, Giometti CS, Tollaksen SL, Khare T, Lies DP, Nealson KH, Lim H, Yates J, Brandt CC, Tiedje JM, Zhou J. Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Applied and Environmental Microbiology. 68: 881-92. PMID 11823232 DOI: 10.1128/Aem.68.2.881-892.2002  0.493
2002 Zhou J, Xia B, Treves DS, Wu LY, Marsh TL, O'Neill RV, Palumbo AV, Tiedje JM. Spatial and resource factors influencing high microbial diversity in soil. Applied and Environmental Microbiology. 68: 326-34. PMID 11772642 DOI: 10.1128/Aem.68.1.326-334.2002  0.555
2002 Kitagawa W, Takami S, Miyauchi K, Masai E, Kamagata Y, Tiedje JM, Fukuda M. Novel 2,4-dichlorophenoxyacetic acid degradation genes from oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment. Journal of Bacteriology. 184: 509-18. PMID 11751829 DOI: 10.1128/Jb.184.2.509-518.2002  0.338
2001 Dollhopf SL, Hashsham SA, Tiedje JM. Interpreting 16S rDNA T-RFLP Data: Application of Self-Organizing Maps and Principal Component Analysis to Describe Community Dynamics and Convergence. Microbial Ecology. 42: 495-505. PMID 12024232 DOI: 10.1007/S00248-001-0027-7  0.802
2001 Wu L, Thompson DK, Li G, Hurt RA, Tiedje JM, Zhou J. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Applied and Environmental Microbiology. 67: 5780-90. PMID 11722935 DOI: 10.1128/Aem.67.12.5780-5790.2001  0.558
2001 Hurt RA, Qiu X, Wu L, Roh Y, Palumbo AV, Tiedje JM, Zhou J. Simultaneous recovery of RNA and DNA from soils and sediments. Applied and Environmental Microbiology. 67: 4495-503. PMID 11571148 DOI: 10.1128/Aem.67.10.4495-4503.2001  0.75
2001 Dollhopf SL, Hashsham SA, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM. The impact of fermentative organisms on carbon flow in methanogenic systems under constant low-substrate conditions. Applied Microbiology and Biotechnology. 56: 531-8. PMID 11549033 DOI: 10.1007/s002530100612  0.796
2001 Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM. DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. Proceedings of the National Academy of Sciences of the United States of America. 98: 9853-8. PMID 11493693 DOI: 10.1073/Pnas.171178898  0.537
2001 Cho JC, Tiedje JM. Bacterial Species Determination from DNA-DNA Hybridization by Using Genome Fragments and DNA Microarrays Applied and Environmental Microbiology. 67: 3677-3682. PMID 11472947 DOI: 10.1128/Aem.67.8.3677-3682.2001  0.308
2001 Rodrigues JL, Maltseva OV, Tsoi TV, Helton RR, Quensen JF, Fukuda M, Tiedje JM. Development of a Rhodococcus recombinant strain for degradation of products from anaerobic dechlorination of PCBs. Environmental Science & Technology. 35: 663-8. PMID 11349275 DOI: 10.1021/Es001308T  0.585
2001 Sun B, Cole JR, Tiedje JM. Desulfomonile limimaris sp. nov., an anaerobic dehalogenating bacterium from marine sediments. International Journal of Systematic and Evolutionary Microbiology. 51: 365-71. PMID 11321081 DOI: 10.1099/00207713-51-2-365  0.31
2001 Braker G, Ayala-del-Río HL, Devol AH, Fesefeldt A, Tiedje JM. Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Applied and Environmental Microbiology. 67: 1893-901. PMID 11282647 DOI: 10.1128/Aem.67.4.1893-1901.2001  0.803
2001 Qiu X, Wu L, Huang H, McDonel PE, Palumbo AV, Tiedje JM, Zhou J. Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning. Applied and Environmental Microbiology. 67: 880-7. PMID 11157258 DOI: 10.1128/Aem.67.2.880-887.2001  0.75
2001 Grüntzig V, Nold SC, Zhou J, Tiedje JM. Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR. Applied and Environmental Microbiology. 67: 760-8. PMID 11157241 DOI: 10.1128/Aem.67.2.760-768.2001  0.785
2000 Cho JC, Tiedje JM. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil Applied and Environmental Microbiology. 66: 5448-5456. PMID 11097926 DOI: 10.1128/Aem.66.12.5448-5456.2000  0.35
2000 Nold SC, Zhou J, Devol AH, Tiedje JM. Pacific Northwest marine sediments contain ammonia-oxidizing bacteria in the β subdivision of the Proteobacteria Applied and Environmental Microbiology. 66: 4532-4535. PMID 11010911 DOI: 10.1128/Aem.66.10.4532-4535.2000  0.479
2000 Fernandez AS, Hashsham SA, Dollhopf SL, Raskin L, Glagoleva O, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM. Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose. Applied and Environmental Microbiology. 66: 4058-67. PMID 10966429 DOI: 10.1128/Aem.66.9.4058-4067.2000  0.8
2000 Hashsham SA, Fernandez AS, Dollhopf SL, Dazzo FB, Hickey RF, Tiedje JM, Criddle CS. Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose. Applied and Environmental Microbiology. 66: 4050-7. PMID 10966428 DOI: 10.1128/Aem.66.9.4050-4057.2000  0.786
2000 Marsh TL, Saxman P, Cole J, Tiedje J. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis Applied and Environmental Microbiology. 66: 3616-3620. PMID 10919828 DOI: 10.1128/Aem.66.8.3616-3620.2000  0.347
2000 Vishnivetskaya T, Kathariou S, McGrath J, Gilichinsky D, Tiedje JM. Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments Extremophiles. 4: 165-173. PMID 10879561 DOI: 10.1007/S007920070031  0.359
2000 Maltseva OV, Tsoi TV, Quensen JF, Fukuda M, Tiedje JM. Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic bacteria. Biodegradation. 10: 363-71. PMID 10870552 DOI: 10.1023/A:1008319306757  0.311
2000 Dedysh SN, Liesack W, Khmelenina VN, Suzina NE, Trotsenko YA, Semrau JD, Bares AM, Panikov NS, Tiedje JM. Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine- pathway methanotrophs International Journal of Systematic and Evolutionary Microbiology. 50: 955-969. PMID 10843033 DOI: 10.1099/00207713-50-3-955  0.34
2000 Sun B, Cole JR, Sanford RA, Tiedje JM. Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Applied and Environmental Microbiology. 66: 2408-13. PMID 10831418 DOI: 10.1128/Aem.66.6.2408-2413.2000  0.586
2000 De Wever H, Cole JR, Fettig MR, Hogan DA, Tiedje JM. Reductive dehalogenation of trichloroacetic acid by Trichlorobacter thiogenes gen. nov., sp. nov. Applied and Environmental Microbiology. 66: 2297-301. PMID 10831402 DOI: 10.1128/Aem.66.6.2297-2301.2000  0.341
2000 Braker G, Zhou J, Wu L, Devol AH, Tiedje JM. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities Applied and Environmental Microbiology. 66: 2096-2104. PMID 10788387 DOI: 10.1128/Aem.66.5.2096-2104.2000  0.533
2000 Löffler FE, Sun Q, Li J, Tiedje JM. 16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species. Applied and Environmental Microbiology. 66: 1369-74. PMID 10742213 DOI: 10.1128/Aem.66.4.1369-1374.2000  0.362
2000 HOOPER DU, BIGNELL DE, BROWN VK, BRUSSARD L, MARK DANGERFIELD J, WALL DH, WARDLE DA, COLEMAN DC, GILLER KE, LAVELLE P, VAN DER PUTTEN WH, DE RUITER PC, RUSEK J, SILVER WL, TIEDJE JM, et al. Interactions between Aboveground and Belowground Biodiversity in Terrestrial Ecosystems: Patterns, Mechanisms, and Feedbacks Bioscience. 50: 1049. DOI: 10.1641/0006-3568(2000)050[1049:Ibaabb]2.0.Co;2  0.312
2000 Flynn SJ, Löffler FE, Tiedje JM. Microbial Community Changes Associated with a Shift from Reductive Dechlorination of PCE to Reductive Dechlorination ofcis-DCE and VC Environmental Science & Technology. 34: 1056-1061. DOI: 10.1021/Es9908164  0.312
1999 Löffler FE, Tiedje JM, Sanford RA. Fraction of electrons consumed in electron acceptor reduction and hydrogen thresholds as indicators of halorespiratory physiology. Applied and Environmental Microbiology. 65: 4049-56. PMID 10473415 DOI: 10.1128/Aem.65.9.4049-4056.1999  0.526
1999 Song B, Häggblom MM, Zhou J, Tiedje JM, Palleroni NJ. Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov. International Journal of Systematic Bacteriology. 49: 1129-40. PMID 10425771 DOI: 10.1099/00207713-49-3-1129  0.471
1999 Tsoi TV, Plotnikova EG, Cole JR, Guerin WF, Bagdasarian M, Tiedje JM. Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142 ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates. Applied and Environmental Microbiology. 65: 2151-62. PMID 10224014 DOI: 10.1128/Aem.65.5.2151-2162.1999  0.368
1999 Löffler FE, Tiedje JM, Sanford RA. Fraction of Electrons Consumed in Electron Acceptor Reduction and Hydrogen Thresholds as Indicators of Halorespiratory Physiology Applied and Environmental Microbiology. 65: 4049-4056. DOI: 10.1128/aem.65.9.4049-4056.1999  0.474
1999 Fernández A, Huang S, Seston S, Xing J, Hickey R, Criddle C, Tiedje J. How Stable Is Stable? Function versus Community Composition Applied and Environmental Microbiology. 65: 3697-3704. DOI: 10.1128/Aem.65.8.3697-3704.1999  0.396
1999 Nüsslein K, Tiedje JM. Soil Bacterial Community Shift Correlated with Change from Forest to Pasture Vegetation in a Tropical Soil Applied and Environmental Microbiology. 65: 3622-3626. DOI: 10.1128/Aem.65.8.3622-3626.1999  0.391
1999 Hrywna Y, Tsoi TV, Maltseva OV, Quensen JF, Tiedje JM. Construction and Characterization of Two Recombinant Bacteria That Grow on ortho- and para-Substituted Chlorobiphenyls Applied and Environmental Microbiology. 65: 2163-2169. DOI: 10.1128/Aem.65.5.2163-2169.1999  0.355
1999 Tiedje JM, Asuming-Brempong S, Nüsslein K, Marsh TL, Flynn SJ. Opening the black box of soil microbial diversity Applied Soil Ecology. 13: 109-122. DOI: 10.1016/S0929-1393(99)00026-8  0.413
1998 Dedysh SN, Panikov NS, Liesack W, Grosskopf R, Zhou J, Tiedje JM. Isolation of acidophilic methane-oxidizing bacteria from northern peat wetlands. Science (New York, N.Y.). 282: 281-4. PMID 9765151 DOI: 10.1126/Science.282.5387.281  0.488
1998 McGowan C, Fulthorpe R, Wright A, Tiedje JM. Evidence for interspecies gene transfer in the evolution of 2,4-dichlorophenoxyacetic acid degraders. Applied and Environmental Microbiology. 64: 4089-92. PMID 9758850 DOI: 10.1128/Aem.64.10.4089-4092.1998  0.348
1998 Fulthorpe RR, Rhodes AN, Tiedje JM. High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria Applied and Environmental Microbiology. 64: 1620-1627. PMID 9572926 DOI: 10.1128/Aem.64.5.1620-1627.1998  0.372
1998 Bogdanova ES, Bass IA, Minakhin LS, Petrova MA, Mindlin SZ, Volodin AA, Kalyaeva ES, Tiedje JM, Hobman JL, Brown NL, Nikiforov VG. Horizontal spread of mer operons among gram-positive bacteria in natural environments. Microbiology (Reading, England). 144: 609-20. PMID 9534232 DOI: 10.1099/00221287-144-3-609  0.324
1998 Rhodes AN, Urbance JW, Youga H, Corlew-Newman H, Reddy CA, Klug MJ, Tiedje JM, Fisher DC. Identification of bacterial isolates obtained from intestinal contents associated with 12,000-year-old mastodon remains. Applied and Environmental Microbiology. 64: 651-8. PMID 9464403 DOI: 10.1128/Aem.64.2.651-658.1998  0.325
1998 Zhou J, Davey ME, Figueras JB, Rivkina E, Gilichinsky D, Tiedje JM. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology (Reading, England). 3913-9. PMID 9421915 DOI: 10.1099/00221287-143-12-3913  0.571
1998 Ka JO, Urbance J, Ye RW, Ahn TY, Tiedje JM. Diversity of oxygen and N-oxide regulation of nitrite reductases in denitrifying bacteria. Fems Microbiology Letters. 156: 55-60. PMID 9368361 DOI: 10.1111/J.1574-6968.1997.Tb12705.X  0.344
1998 Nüsslein K, Tiedje JM. Characterization of the Dominant and Rare Members of a Young Hawaiian Soil Bacterial Community with Small-Subunit Ribosomal DNA Amplified from DNA Fractionated on the Basis of Its Guanine and Cytosine Composition Applied and Environmental Microbiology. 64: 1283-1289. DOI: 10.1128/Aem.64.4.1283-1289.1998  0.397
1998 Dedysh SN, Panikov NS, Tiedje JM. Acidophilic Methanotrophic Communities fromSphagnum Peat Bogs Applied and Environmental Microbiology. 64: 922-929. DOI: 10.1128/Aem.64.3.922-929.1998  0.366
1998 Prinčič A, Mahne I, Megušar F, Paul EA, Tiedje JM. Effects of pH and Oxygen and Ammonium Concentrations on the Community Structure of Nitrifying Bacteria from Wastewater Applied and Environmental Microbiology. 64: 3584-3590. DOI: 10.1128/Aem.64.10.3584-3590.1998  0.373
1998 Rivkina E, Gilichinsky D, Wagener S, Tiedje J, McGrath J. Biogeochemical activity of anaerobic microorganisms from buried permafrost sediments Geomicrobiology Journal. 15: 187-193. DOI: 10.1080/01490459809378075  0.346
1998 Santo Domingo JW, Kaufman MG, Klug MJ, Holben WE, Harris D, Tiedje JM. Influence of diet on the structure and function of the bacterial hindgut community of crickets Molecular Ecology. 7: 761-767. DOI: 10.1046/J.1365-294X.1998.00390.X  0.337
1998 Moyer CL, Tiedje JM, Dobbs FC, Karl DM. Diversity of deep-sea hydrothermal vent archaea from Loihi Seamount, Hawaii Deep-Sea Research Part Ii: Topical Studies in Oceanography. 45: 303-317. DOI: 10.1016/S0967-0645(97)00081-7  0.389
1997 Fries MR, Forney LJ, Tiedje JM. Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred. Applied and Environmental Microbiology. 63: 1523-30. PMID 16535577 DOI: 10.1128/Aem.63.4.1523-1530.1997  0.32
1997 Fries MR, Hopkins GD, McCarty PL, Forney LJ, Tiedje JM. Microbial Succession during a Field Evaluation of Phenol and Toluene as the Primary Substrates for Trichloroethene Cometabolism. Applied and Environmental Microbiology. 63: 1515-22. PMID 16535576 DOI: 10.1128/Aem.63.4.1515-1522.1997  0.382
1997 Matheson VG, Munakata-Marr J, Hopkins GD, McCarty PL, Tiedje JM, Forney LJ. A novel means to develop strain-specific DNA probes for detecting bacteria in the environment. Applied and Environmental Microbiology. 63: 2863-9. PMID 9212434 DOI: 10.1128/Aem.63.7.2863-2869.1997  0.347
1997 Kamagata Y, Fulthorpe RR, Tamura K, Takami H, Forney LJ, Tiedje JM. Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria. Applied and Environmental Microbiology. 63: 2266-72. PMID 9172346 DOI: 10.1128/Aem.63.6.2266-2272.1997  0.39
1997 Zhou J, Palumbo AV, Tiedje JM. Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes. Applied and Environmental Microbiology. 63: 2384-2390. DOI: 10.1128/Aem.63.6.2384-2390.1997  0.522
1997 Massol-Deyá A, Weller R, Ríos-Hernández L, Zhou JZ, Hickey RF, Tiedje JM. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Applied and Environmental Microbiology. 63: 270-276. DOI: 10.1128/Aem.63.1.270-276.1997  0.366
1997 Larsen N, Overbeek R, Pramanik S, Schmidt TM, Selkov EE, Strunk O, Tiedje JM, Urbance JW. Towards microbial data integration Journal of Industrial Microbiology and Biotechnology. 18: 68-72. DOI: 10.1038/Sj.Jim.2900366  0.331
1997 Sanford RA, Tiedje JM. Chlorophenol dechlorination and subsequent degradation in denitrifying microcosms fed low concentrations of nitrate Biodegradation. 7: 425-434. DOI: 10.1007/Bf00056426  0.621
1996 Chee-Sanford JC, Frost JW, Fries MR, Zhou J, Tiedje JM. Evidence for acetyl coenzyme A and cinnamoyl coenzyme A in the anaerobic toluene mineralization pathway in Azoarcus tolulyticus Tol-4. Applied and Environmental Microbiology. 62: 964-73. PMID 8975623 DOI: 10.1128/Aem.62.3.964-973.1996  0.46
1996 Fulthorpe RR, Rhodes AN, Tiedje JM. Pristine soils mineralize 3-chlorobenzoate and 2,4-dichlorophenoxyacetate via different microbial populations Applied and Environmental Microbiology. 62: 1159-1166. PMID 8919776 DOI: 10.1128/Aem.62.4.1159-1166.1996  0.383
1996 Sanford RA, Cole JR, Löffler FE, Tiedje JM. Characterization of Desulfitobacterium chlororespirans sp. nov., which grows by coupling the oxidation of lactate to the reductive dechlorination of 3-chloro-4-hydroxybenzoate. Applied and Environmental Microbiology. 62: 3800-8. PMID 8837437 DOI: 10.1128/Aem.62.10.3800-3808.1996  0.594
1996 Moyer CL, Tiedje JM, Dobbs FC, Karl DM. A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature Applied and Environmental Microbiology. 62: 2501-2507. PMID 8779589 DOI: 10.1128/Aem.62.7.2501-2507.1996  0.358
1996 Zhou J, Bruns MA, Tiedje JM. DNA recovery from soils of diverse composition. Applied and Environmental Microbiology. 62: 316-22. PMID 8593035 DOI: 10.1128/Aem.62.2.316-322.1996  0.506
1996 Zhou J, Fries MR, Chee-Sanford JC, Tiedje JM. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. International Journal of Systematic Bacteriology. 45: 500-6. PMID 8590677 DOI: 10.1099/00207713-45-3-500  0.477
1996 Shih C, Davey ME, Zhou J, Tiedje JM, Criddle CS. Effects of phenol feeding pattern on microbial community structure and cometabolism of trichloroethylene. Applied and Environmental Microbiology. 62: 2953-2960. DOI: 10.1128/Aem.62.8.2953-2960.1996  0.47
1996 Pellizari VH, Bezborodnikov S, Quensen JF, Tiedje JM. Evaluation of strains isolated by growth on naphthalene and biphenyl for hybridization of genes to dioxygenase probes and polychlorinated biphenyl-degrading ability. Applied and Environmental Microbiology. 62: 2053-2058. DOI: 10.1128/Aem.62.6.2053-2058.1996  0.349
1996 Loffler FE, Sanford RA, Tiedje JM. Initial Characterization of a Reductive Dehalogenase from Desulfitobacterium chlororespirans Co23. Applied and Environmental Microbiology. 62: 3809-3813. DOI: 10.1128/Aem.62.10.3809-3813.1996  0.55
1996 Sanford RA, Cole JR, Löffler FE, Tiedje JM. Characterization of Desulfitobacterium chlororespirans sp. nov., which grows by coupling the oxidation of lactate to the reductive dechlorination of 3-chloro-4-hydroxybenzoate. Applied and Environmental Microbiology. 62: 3800-3808. DOI: 10.1128/aem.62.10.3800-3808.1996  0.481
1995 Ye D, Quensen JI, Tiedje JM, Boyd SA. Evidence for para dechlorination of polychlorobiphenyls by methanogenic bacteria. Applied and Environmental Microbiology. 61: 2166-71. PMID 16535042 DOI: 10.1128/Aem.61.6.2166-2171.1995  0.313
1995 Ye RW, Haas D, Ka JO, Krishnapillai V, Zimmermann A, Baird C, Tiedje JM. Anaerobic activation of the entire denitrification pathway in Pseudomonas aeruginosa requires Anr, an analog of Fnr. Journal of Bacteriology. 177: 3606-9. PMID 7768875 DOI: 10.1128/Jb.177.12.3606-3609.1995  0.348
1995 Zhou JZ, Tiedje JM. Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium. Molecular Ecology. 4: 613-8. PMID 7582169 DOI: 10.1111/J.1365-294X.1995.Tb00261.X  0.357
1995 Fulthorpe RR, McGowan C, Maltseva OV, Holben WE, Tiedje JM. 2,4-Dichlorophenoxyacetic acid-degrading bacteria contain mosaics of catabolic genes. Applied and Environmental Microbiology. 61: 3274-81. PMID 7574638 DOI: 10.1128/Aem.61.9.3274-3281.1995  0.369
1994 Ka JO, Tiedje JM. Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer. Journal of Bacteriology. 176: 5284-9. PMID 8071203 DOI: 10.1128/Jb.176.17.5284-5289.1994  0.335
1994 Ka JO, Holben WE, Tiedje JM. Analysis of competition in soil among 2,4-dichlorophenoxyacetic acid-degrading bacteria. Applied and Environmental Microbiology. 60: 1121-8. PMID 8017909 DOI: 10.1128/Aem.60.4.1121-1128.1994  0.378
1994 Ka JO, Holben WE, Tiedje JM. Use of gene probes to aid in recovery and identification of functionally dominant 2,4-dichlorophenoxyacetic acid-degrading populations in soil. Applied and Environmental Microbiology. 60: 1116-20. PMID 8017908 DOI: 10.1128/Aem.60.4.1116-1120.1994  0.397
1994 Ka JO, Holben WE, Tiedje JM. Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Applied and Environmental Microbiology. 60: 1106-15. PMID 8017907 DOI: 10.1128/Aem.60.4.1106-1115.1994  0.346
1994 Thiem SM, Krumme ML, Smith RL, Tiedje JM. Use of molecular techniques to evaluate the survival of a microorganism injected into an aquifer Applied and Environmental Microbiology. 60: 1059-1067. PMID 7912498 DOI: 10.1128/Aem.60.4.1059-1067.1994  0.323
1994 Cole JR, Cascarelli AL, Mohn WW, Tiedje JM. Isolation and characterization of a novel bacterium growing via reductive dehalogenation of 2-chlorophenol. Applied and Environmental Microbiology. 60: 3536-42. PMID 7527200 DOI: 10.1128/Aem.60.10.3536-3542.1994  0.335
1994 Højberg O, Revsbech NP, Tiedje JM. Denitrification in Soil Aggregates Analyzed with Microsensors for Nitrous Oxide and Oxygen Soil Science Society of America Journal. 58: 1691. DOI: 10.2136/Sssaj1994.03615995005800060016X  0.307
1994 Fries MR, Zhou J, Chee-Sanford J, Tiedje JM. Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats. Applied and Environmental Microbiology. 60: 2802-2810. DOI: 10.1128/Aem.60.8.2802-2810.1994  0.552
1994 Krumme ML, Smith RL, Egestorff J, Thiem SM, Tiedje JM, Timmis KN, Dwyer DF. Behavior of pollutant-degrading microorganisms in aquifers: Predictions for genetically engineered organisms Environmental Science and Technology. 28: 1134-1138. DOI: 10.1021/Es00055A025  0.65
1993 Ye RW, Fries MR, Bezborodnikov SG, Averill BA, Tiedje JM. Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers. Applied and Environmental Microbiology. 59: 250-4. PMID 8439151 DOI: 10.1128/Aem.59.1.250-254.1993  0.346
1993 Tiedje JM, Quensen JF, Chee-Sanford J, Schimel JP, Boyd SA. Microbial reductive dechlorination of PCBs. Biodegradation. 4: 231-40. PMID 7764920 DOI: 10.1007/Bf00695971  0.609
1993 Groffman PM, Rice CW, Tiedje JM. Denitrification in a Tallgrass Prairie Landscape Ecology. 74: 855-862. DOI: 10.2307/1940811  0.332
1993 Groffmann PM, Zak DR, Christensen S, Mosier A, Tiedje JM. Early Spring Nitrogen Dynamics in a Temperate Forest Landscape Ecology. 74: 1579-1585. DOI: 10.2307/1940085  0.356
1993 Jørgensen KS, Tiedje JM. Survival of Denitrifiers in Nitrate-Free, Anaerobic Environments Applied and Environmental Microbiology. 59: 3297-3305. DOI: 10.1128/Aem.59.10.3297-3305.1993  0.326
1992 Holben WE, Schroeter BM, Calabrese VG, Olsen RH, Kukor JK, Biederbeck VO, Smith AE, Tiedje JM. Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid. Applied and Environmental Microbiology. 58: 3941-8. PMID 1476437 DOI: 10.1128/Aem.58.12.3941-3948.1992  0.363
1992 Morris PJ, Quensen JF, Tiedje JM, Boyd SA. Reductive debromination of the commercial polybrominated biphenyl mixture firemaster BP6 by anaerobic microorganisms from sediments. Applied and Environmental Microbiology. 58: 3249-56. PMID 1332608 DOI: 10.1128/Aem.58.10.3249-3256.1992  0.337
1992 Mohn WW, Tiedje JM. Microbial reductive dehalogenation. Microbiological Reviews. 56: 482-507. DOI: 10.1128/Mmbr.56.3.482-507.1992  0.305
1992 Smith GB, Tiedje JM. Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria. Applied and Environmental Microbiology. 58: 376-384. DOI: 10.1128/Aem.58.1.376-384.1992  0.386
1992 Groffman PM, Tiedje JM, Mokma DL, Simkins S. Regional scale analysis of denitrification in north temperate forest soils Landscape Ecology. 7: 45-53. DOI: 10.1007/Bf02573956  0.342
1991 Groffman PM, Tiedje JM. Relationships between denitrification, CO2 production and air-filled porosity in soils of different texture and drainage Soil Biology and Biochemistry. 23: 299-302. DOI: 10.1016/0038-0717(91)90067-T  0.317
1990 Christensen S, Simkins S, Tiedje JM. Temporal Patterns of Soil Denitrification: Their Stability and Causes Soil Science Society of America Journal. 54: 1614-1618. DOI: 10.2136/Sssaj1990.03615995005400060017X  0.307
1990 Christensen S, Simkins S, Tiedje JM. Spatial Variation in Denitrification: Dependency of Activity Centers on the Soil Environment Soil Science Society of America Journal. 54: 1608-1613. DOI: 10.2136/Sssaj1990.03615995005400060016X  0.319
1990 CHRISTENSEN S, TIEDJE JM. Brief and vigorous N2O production by soil at spring thaw Journal of Soil Science. 41: 1-4. DOI: 10.1111/J.1365-2389.1990.Tb00039.X  0.354
1989 Jansson JK, Holben WE, Tiedje JM. Detection in soil of a deletion in an engineered DNA sequence by using DNA probes. Applied and Environmental Microbiology. 55: 3022-5. PMID 2624468 DOI: 10.1128/Aem.55.11.3022-3025.1989  0.6
1989 Coyne MS, Arunakumari A, Averill BA, Tiedje JM. Immunological identification and distribution of dissimilatory heme cd1 and nonheme copper nitrite reductases in denitrifying bacteria. Applied and Environmental Microbiology. 55: 2924-31. PMID 2624465 DOI: 10.1128/Aem.55.11.2924-2931.1989  0.322
1989 Linkfield TG, Suflita JM, Tiedje JM. Characterization of the acclimation period before anaerobic dehalogenation of halobenzoates Applied and Environmental Microbiology. 55: 2773-2778. PMID 2624458 DOI: 10.1128/Aem.55.11.2773-2778.1989  0.303
1989 Tiedje JM, Colwell RK, Grossman YL, Hodson RE, Lenski RE, Mack RN, Regal PJ. The Planned Introduction of Genetically Engineered Organisms: Ecological Considerations and Recommendations Ecology. 70: 298-315. DOI: 10.2307/1937535  0.549
1989 Rice CW, Tiedje JM. Regulation of nitrate assimilation by ammonium in soils and in isolated soil microorganisms Soil Biology and Biochemistry. 21: 597-602. DOI: 10.1016/0038-0717(89)90135-1  0.369
1989 Groffman PM, Tiedje JM. Denitrification in north temperate forest soils: Relationships between denitrification and environmental factors at the landscape scale Soil Biology and Biochemistry. 21: 621-626. DOI: 10.1016/0038-0717(89)90054-0  0.37
1989 Groffman PM, Tiedje JM. Denitrification in north temperate forest soils: Spatial and temporal patterns at the landscape and seasonal scales Soil Biology and Biochemistry. 21: 613-620. DOI: 10.1016/0038-0717(89)90053-9  0.357
1989 Tiedje JM, Simkins S, Groffman PM. Perspectives on measurement of denitrification in the field including recommended protocols for acetylene based methods Plant and Soil. 115: 261-284. DOI: 10.1007/Bf02202594  0.324
1988 Quensen JF, Tiedje JM, Boyd SA. Reductive dechlorination of polychlorinated biphenyls by anaerobic microorganisms from sediments. Science (New York, N.Y.). 242: 752-4. PMID 17751997 DOI: 10.1126/Science.242.4879.752  0.313
1988 Dwyer DF, Weeg-Aerssens E, Shelton DR, Tiedje JM. Bioenergetic conditions of butyrate metabolism by a syntrophic, anaerobic bacterium in coculture with hydrogen-oxidizing methanogenic and sulfidogenic bacteria. Applied and Environmental Microbiology. 54: 1354-9. PMID 16347645 DOI: 10.1128/Aem.54.6.1354-1359.1988  0.659
1988 Holben WE, Jansson JK, Chelm BK, Tiedje JM. DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Applied and Environmental Microbiology. 54: 703-711. PMID 16347582 DOI: 10.1128/Aem.54.3.703-711.1988  0.605
1988 Tiedje JM, Stevens TO. The ecology of an anaerobic dechlorinating consortium. Basic Life Sciences. 45: 3-14. PMID 3052411 DOI: 10.1007/978-1-4899-0824-7_1  0.323
1988 Robertson GP, Hutson MA, Evans FC, Tiedje JM. Spatial Variability in a Successional Plant Community: Patterns of Nitrogen Availability Ecology. 69: 1517-1524. DOI: 10.2307/1941649  0.469
1988 Holben WE, Tiedje JM. Applications of Nucleic Acid Hybridization in Microbial Ecology Ecology. 69: 561-568. DOI: 10.2307/1941005  0.384
1988 Groffman PM, Tiedje JM. Denitrification Hysteresis During Wetting and Drying Cycles in Soil Soil Science Society of America Journal. 52: 1626-1629. DOI: 10.2136/Sssaj1988.03615995005200060022X  0.329
1988 Rice CW, Sierzega PE, Tiedje JM, Jacobs LW. Stimulated Denitrification in the Microenvironment of a Biodegradable Organic Waste Injected into Soil Soil Science Society of America Journal. 52: 102-108. DOI: 10.2136/Sssaj1988.03615995005200010018X  0.321
1988 Dwyer DF, Weeg-Aerssens E, Shelton DR, Tiedje JM. Bioenergetic Conditions of Butyrate Metabolism by a Syntrophic, Anaerobic Bacterium in Coculture with Hydrogen-Oxidizing Methanogenic and Sulfidogenic Bacteria † Applied and Environmental Microbiology. 54: 1354-1359. DOI: 10.1128/aem.54.6.1354-1359.1988  0.629
1988 Stevens TO, Linkfield TG, Tiedje JM. Physiological characterization of strain DCB-1, a unique dehalogenating sulfidogenic bacterium. Applied and Environmental Microbiology. 54: 2938-2943. DOI: 10.1128/Aem.54.12.2938-2943.1988  0.305
1988 Robertson GP, Tiedje JM. Deforestation alters denitrification in a lowland tropical rain forest Nature. 336: 756-759. DOI: 10.1038/336756A0  0.425
1987 Robertson G, tiedje J. Nitrous oxide sources in aerobic soils: Nitrification, denitrification and other biological processes Soil Biology and Biochemistry. 19: 187-193. DOI: 10.1016/0038-0717(87)90080-0  0.46
1987 Robertson GP, Vitousek PM, Matson PA, Tiedje JM. Denitrification in a clearcut Loblolly pine (Pinus taeda L.) plantation in the southeastern US Plant and Soil. 97: 119-129. DOI: 10.1007/Bf02149830  0.607
1987 Boyd SA, Fathepure BZ, Tiedje JM. Reductive dechlorination of 4-chlororesorcinol by anaerobic microorganisms Environmental Toxicology and Chemistry. 6: 929-934. DOI: 10.1002/Etc.5620061204  0.324
1986 Dwyer DF, Tiedje JM. Metabolism of polyethylene glycol by two anaerobic bacteria, Desulfovibrio desulfuricans and a Bacteroides sp Applied and Environmental Microbiology. 52: 852-856. PMID 3777930 DOI: 10.1128/Aem.52.4.852-856.1986  0.664
1986 Dwyer DF, Tiedje JM. Metabolism of polyethylene glycol by two anaerobic bacteria, Desulfovibrio desulfuricans and a Bacteroides sp. Applied and Environmental Microbiology. 52: 852-856. DOI: 10.1128/aem.52.4.852-856.1986  0.632
1986 Dwyer DF, Krumme ML, Boyd SA, Tiedje JM. Kinetics of Phenol Biodegradation by an Immobilized Methanogenic Consortium † Applied and Environmental Microbiology. 52: 345-351. DOI: 10.1128/Aem.52.2.345-351.1986  0.649
1986 Myrold DD, Tiedje JM. Simultaneous estimation of several nitrogen cycle rates using 15N: Theory and application Soil Biology and Biochemistry. 18: 559-568. DOI: 10.1016/0038-0717(86)90076-3  0.31
1985 Myrold DD, Tiedje JM. Diffusional Constraints on Denitrification in Soil Soil Science Society of America Journal. 49: 651-657. DOI: 10.2136/Sssaj1985.03615995004900030025X  0.331
1985 Sexstone AJ, Revsbech NP, Parkin TB, Tiedje JM. Direct Measurement of Oxygen Profiles and Denitrification Rates in Soil Aggregates Soil Science Society of America Journal. 49: 645-651. DOI: 10.2136/Sssaj1985.03615995004900030024X  0.312
1985 Parkin TB, Sexstone AJ, Tiedje JM. Adaptation of Denitrifying Populations to Low Soil pH † Applied and Environmental Microbiology. 49: 1053-1056. DOI: 10.1128/Aem.49.5.1053-1056.1985  0.33
1985 Myrold DD, Tiedje JM. Establishment of denitrification capacity in soil: Effects of carbon, nitrate and moisture Soil Biology and Biochemistry. 17: 819-822. DOI: 10.1016/0038-0717(85)90140-3  0.392
1984 Shelton DR, Tiedje JM. Isolation and partial characterization of bacteria in an anaerobic consortium that mineralizes 3-chlorobenzoic Acid. Applied and Environmental Microbiology. 48: 840-8. PMID 16346648 DOI: 10.1128/Aem.48.4.840-848.1984  0.321
1984 Robertson GP, Tiedje JM. Denitrification and Nitrous Oxide Production in Successional and Old-Growth Michigan Forests Soil Science Society of America Journal. 48: 383-389. DOI: 10.2136/Sssaj1984.03615995004800020032X  0.406
1984 Parkin TB, Tiedje JM. Application of a soil core method to investigate the effect of oxygen concentration on denitrification Soil Biology and Biochemistry. 16: 331-334. DOI: 10.1016/0038-0717(84)90027-0  0.318
1984 Parkin TB, Kaspar HF, Sexstone AJ, Tiedje JM. A gas-flow soil core method to measure field denitrification rates Soil Biology and Biochemistry. 16: 323-330. DOI: 10.1016/0038-0717(84)90026-9  0.351
1984 Tiedje JM, Sexstone AJ, Parkin TB, Revsbech NP. Anaerobic processes in soil Plant and Soil. 76: 197-212. DOI: 10.1007/978-94-009-6101-2_18  0.386
1983 Dwyer DF, Tiedje JM. Degradation of ethylene glycol and polyethylene glycols by methanogenic consortia Applied and Environmental Microbiology. 46: 185-190. PMID 6614903 DOI: 10.1128/Aem.46.1.185-190.1983  0.653
1983 Dwyer DF, Tiedje JM. Degradation of ethylene glycol and polyethylene glycols by methanogenic consortia. Applied and Environmental Microbiology. 46: 185-190. DOI: 10.1128/aem.46.1.185-190.1983  0.609
1982 Suflita JM, Horowitz A, Shelton DR, Tiedje JM. Dehalogenation: a novel pathway for the anaerobic biodegradation of haloaromatic compounds. Science (New York, N.Y.). 218: 1115-7. PMID 17752871 DOI: 10.1126/Science.218.4577.1115  0.31
1982 Bleakley BH, Tiedje JM. Nitrous oxide production by organisms other than nitrifiers or denitrifiers. Applied and Environmental Microbiology. 44: 1342-8. PMID 16346152 DOI: 10.1128/Aem.44.6.1342-1348.1982  0.332
1980 Firestone MK, Firestone RB, Tiedje JM. Nitrous oxide from soil denitrification: factors controlling its biological production. Science (New York, N.Y.). 208: 749-51. PMID 17771133 DOI: 10.1126/Science.208.4445.749  0.543
1980 Caskey WH, Tiedje JM. The reduction of nitrate to ammonium by a Clostridium sp. isolated from soil. Journal of General Microbiology. 119: 217-23. PMID 6106043 DOI: 10.1099/00221287-119-1-217  0.324
1980 Smith MS, Tiedje JM. Growth and survival of antibiotic-resistant denitrifier strains in soil Canadian Journal of Microbiology. 26: 854-856. DOI: 10.1139/M80-148  0.362
1979 Firestone MK, Tiedje JM. Temporal change in nitrous oxide and dinitrogen from denitrification following onset of anaerobiosis. Applied and Environmental Microbiology. 38: 673-9. PMID 16345447 DOI: 10.1128/Aem.38.4.673-679.1979  0.498
1979 Firestone MK, Firestone RB, Tiedje JM. Nitric oxide as an intermediate in denitrification: evidence from nitrogen-13 isotope exchange. Biochemical and Biophysical Research Communications. 91: 10-6. PMID 518609 DOI: 10.1016/0006-291X(79)90575-8  0.495
1979 Firestone MK, Smith MS, Firestone RB, Tiedje JM. The Influence of Nitrate, Nitrite, and Oxygen on the Composition of the Gaseous Products of Denitrification in Soil Soil Science Society of America Journal. 43: 1140-1144. DOI: 10.2136/Sssaj1979.03615995004300060016X  0.547
1979 Smith MS, Tiedje JM. The Effect of Roots on Soil Denitrification Soil Science Society of America Journal. 43: 951-955. DOI: 10.2136/Sssaj1979.03615995004300050027X  0.351
1979 Caskey WH, Tiedje JM. Evidence for Clostridia as Agents of Dissimilatory Reduction of Nitrate to Ammonium in Soils Soil Science Society of America Journal. 43: 931-936. DOI: 10.2136/Sssaj1979.03615995004300050023X  0.381
1979 Tiedje JM, Firestone RB, Firestone MK, Betlach MR, Smith MS, Caskey WH. Methods for the Production and Use of Nitrogen-13 In Studies of Denitrification Soil Science Society of America Journal. 43: 709-716. DOI: 10.2136/Sssaj1979.03615995004300040016X  0.484
1979 Smith M, Tiedje JM. Phases of denitrification following oxygen depletion in soil Soil Biology and Biochemistry. 11: 261-267. DOI: 10.1016/0038-0717(79)90071-3  0.344
1978 Firestone MK, Tiedje JM. Pathway of degradation of nitrilotriacetate by a Pseudomonas species. Applied and Environmental Microbiology. 35: 955-61. PMID 655711 DOI: 10.1128/Aem.35.5.955-961.1978  0.559
1978 Chou SF, Jacobs LW, Penner D, Tiedje JM. Absence of plant uptake and translocation of polybrominated biphenyls (PBBs). Environmental Health Perspectives. 23: 9-12. PMID 210006 DOI: 10.1289/Ehp.78239  0.346
1978 Jacobs LW, Chou SF, Tiedje JM. Field concentrations and persistence of polybrominated biphenyls in soils and solubility of PBB in natural waters. Environmental Health Perspectives. 23: 1-8. PMID 209960 DOI: 10.1289/Ehp.78231  0.362
1978 Firestone MK, Aust SD, Tiedje JM. A nitrilotriacetic acid monooxygenase with conditional NADH-oxidase activity. Archives of Biochemistry and Biophysics. 190: 617-23. PMID 31137 DOI: 10.1016/0003-9861(78)90318-1  0.493
1978 Smith MS, Firestone MK, Tiedje JM. The Acetylene Inhibition Method for Short-term Measurement of Soil Denitrification and its Evaluation Using Nitrogen-131 Soil Science Society of America Journal. 42: 611. DOI: 10.2136/Sssaj1978.03615995004200040015X  0.541
1978 McGahen LL, Tiedje JM. Metabolism of two new acylanilide herbicides, Antor herbicide (H-22234) and Dual (metolachlor) by the soil fungus Chaetomium globosum Journal of Agricultural and Food Chemistry. 26: 414-419. DOI: 10.1021/Jf60216A007  0.32
1977 Gamble TN, Betlach MR, Tiedje JM. Numerically Dominant Denitrifying Bacteria from World Soils Applied and Environmental Microbiology. 33: 926-939. PMID 869539 DOI: 10.1128/Aem.33.4.926-939.1977  0.39
1977 Jacobs LW, Chou SF, Tiedje JM. Fate of polybrominated biphenyls (PBB's) in soils. Persistence and plant uptake. Journal of Agricultural and Food Chemistry. 24: 1198-201. PMID 187634 DOI: 10.1021/Jf60208A005  0.313
1976 Reyes V, Tiedje J. Metabolism of 14c-labeled plant materials by woodlice (Tracheoniscus rathkei brandt) and soil microorganisms Soil Biology and Biochemistry. 8: 103-108. DOI: 10.1016/0038-0717(76)90073-0  0.363
1975 Firestone MK, Tiedje JM. Biodegradation of metal-nitrilotriacetate complexes by a Pseudomonas species: mechanism of reaction. Applied Microbiology. 29: 758-64. PMID 1155932 DOI: 10.1128/Aem.29.6.758-764.1975  0.498
1975 Tiedje JM, Hagedorn MJ. Degradation of alachlor by a soil fungus, Chaetomium globosum. Journal of Agricultural and Food Chemistry. 23: 77-81. PMID 1133282 DOI: 10.1021/Jf60197A029  0.344
1975 Caldwell DE, Tiedje JM. The structure of anaerobic bacterial communities in the hypolimnia of several Michigan lakes. Canadian Journal of Microbiology. 21: 377-85. PMID 1090351 DOI: 10.1139/M75-052  0.338
1975 Caldwell DE, Tiedje JM. A morphological study of anaerobic bacteria from the hypolimnia of two Michigan lakes. Canadian Journal of Microbiology. 21: 362-76. PMID 1090350 DOI: 10.1139/M75-051  0.336
1975 Tiedje JM. Microbial Degradation of Ethylenediaminetetraacetate in Soils and Sediments1 Applied Microbiology. 30: 327-329. DOI: 10.1128/Aem.30.2.327-329.1975  0.337
1973 Tiedje JM, Mason BB, Warren CB, Malec EJ. Metabolism of Nitrilotriacetate by Cells of Pseudomonas Species1 Applied Microbiology. 25: 811-818. DOI: 10.1128/Aem.25.5.811-818.1973  0.327
1973 Reyes V, Tiedje J. Metabolism of 14C uniformly labeled organic material by woodlice [Isopoda: Oniscoidea] and soil microorganisms Soil Biology and Biochemistry. 5: 603-611. DOI: 10.1016/0038-0717(73)90050-3  0.31
1970 Duxbury JM, Tiedje JM, Alexander M, Dawson JE. 2,4-D metabolism: Enzymatic conversion of chloromaleylacetic acid to succinic acid Journal of Agricultural and Food Chemistry. 18: 199-201. PMID 4400316 DOI: 10.1021/Jf60168A029  0.403
1969 Tiedje JM, Alexander M. Enzymic cleavage of the ether bond of 2,4-dichlorophenoxyacetate. Journal of Agricultural and Food Chemistry. 17: 1080-4. PMID 21428356 DOI: 10.1021/Jf60165A012  0.382
1969 Tiedje JM, Duxbury JM, Alexander M, Dawson JE. 2,4-D metabolism: pathway of degradation of chlorocatechols by Arthrobacter sp. Journal of Agricultural and Food Chemistry. 17: 1021-6. PMID 21428341 DOI: 10.1021/Jf60165A037  0.419
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