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Ariel Kaplan, Ph.D. - Publications

Affiliations: 
Biology Technion - Israel Institute of Technology, Haifa, Haifa District, Israel 
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Zananiri R, Mangapuram Venkata S, Gaydar V, Yahalom D, Malik O, Rudnizky S, Kleifeld O, Kaplan A, Henn A. Auxiliary ATP binding sites support DNA unwinding by RecBCD. Nature Communications. 13: 1806. PMID 35379800 DOI: 10.1038/s41467-022-29387-1  0.765
2021 Khamis H, Rudnizky S, Melamed P, Kaplan A. Single molecule characterization of the binding kinetics of a transcription factor and its modulation by DNA sequence and methylation. Nucleic Acids Research. 49: 10975-10987. PMID 34606618 DOI: 10.1093/nar/gkab843  0.809
2021 Rudnizky S, Khamis H, Ginosar Y, Goren E, Melamed P, Kaplan A. Extended and dynamic linker histone-DNA Interactions control chromatosome compaction. Molecular Cell. PMID 34192510 DOI: 10.1016/j.molcel.2021.06.006  0.769
2020 Bar-Sadeh B, Rudnizky S, Pnueli L, Bentley GR, Stöger R, Kaplan A, Melamed P. Unravelling the role of epigenetics in reproductive adaptations to early-life environment. Nature Reviews. Endocrinology. PMID 32620937 DOI: 10.1038/S41574-020-0370-8  0.762
2020 Venkata SM, Zananiri R, Gaydar V, Kleifeld O, Kaplan A, Henn A. Characterzing the Auxiliary Nucleotide Binding Sites in RecBCD DNA Helicase, Towards Deciphering their Functional Role Biophysical Journal. 118: 534a. DOI: 10.1016/J.Bpj.2019.11.2931  0.528
2019 Rudnizky S, Khamis H, Malik O, Melamed P, Kaplan A. The base pair-scale diffusion of nucleosomes modulates binding of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 31147470 DOI: 10.1073/Pnas.1815424116  0.787
2019 Kreiserman R, Malik O, Kaplan A. Decoupling conservative forces and hydrodynamic interactions between optically trapped spheres. Physical Review. E. 99: 012611. PMID 30780371 DOI: 10.1103/Physreve.99.012611  0.752
2019 Zananiri R, Malik O, Rudnizky S, Gaydar V, Kreiserman R, Henn A, Kaplan A. Synergy between RecBCD subunits is essential for efficient DNA unwinding. Elife. 8. PMID 30601118 DOI: 10.7554/Elife.40836  0.753
2019 Mangapuram Venkata S, Zananiri R, Gaydar V, Kleifeld O, Kaplan A, Henn A. Investigating the Role of the Auxiliary Nucleotide Binding Sites in the Recbcd DNA Helicase Biophysical Journal. 116: 490a. DOI: 10.1016/J.Bpj.2018.11.2641  0.532
2018 Zhitomirsky B, Yunaev A, Kreiserman R, Kaplan A, Stark M, Assaraf YG. Lysosomotropic drugs activate TFEB via lysosomal membrane fluidization and consequent inhibition of mTORC1 activity. Cell Death & Disease. 9: 1191. PMID 30546014 DOI: 10.1038/S41419-018-1227-0  0.745
2018 Melamed P, Haj M, Yosefzon Y, Rudnizky S, Wijeweera A, Pnueli L, Kaplan A. Multifaceted Targeting of the Chromatin Mediates Gonadotropin-Releasing Hormone Effects on Gene Expression in the Gonadotrope. Frontiers in Endocrinology. 9: 58. PMID 29535683 DOI: 10.3389/Fendo.2018.00058  0.784
2018 Zananiri R, Malik O, Rudnizky S, Gaydar V, Kreiserman R, Henn A, Kaplan A. Author response: Synergy between RecBCD subunits is essential for efficient DNA unwinding Elife. DOI: 10.7554/Elife.40836.026  0.783
2018 Khamis H, Rudnizky S, Malik O, Squires A, Meller A, Philippa M, Kaplan A. Single-Molecule DNA Unzipping Reveals Asymmetric Modulation of the Transcription Factor EGR-1 by its Binding Site Sequence and Context Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.3686  0.808
2017 Rudnizky S, Khamis H, Malik O, Squires AH, Meller A, Melamed P, Kaplan A. Single-molecule DNA unzipping reveals asymmetric modulation of a transcription factor by its binding site sequence and context. Nucleic Acids Research. PMID 29253225 DOI: 10.1093/Nar/Gkx1252  0.796
2017 Malik O, Khamis H, Rudnizky S, Kaplan A. The mechano-chemistry of a monomeric reverse transcriptase. Nucleic Acids Research. PMID 29165701 DOI: 10.1093/Nar/Gkx1168  0.765
2017 Malik O, Khamis H, Rudnizky S, Marx A, Kaplan A. Pausing kinetics dominates strand-displacement polymerization by reverse transcriptase. Nucleic Acids Research. 45: 10190-10205. PMID 28973474 DOI: 10.1093/Nar/Gkx720  0.786
2017 Rudnizky S, Malik O, Bavly A, Pnueli L, Melamed P, Kaplan A. Nucleosome mobility and the regulation of gene expression: Insights from single-molecule studies. Protein Science : a Publication of the Protein Society. PMID 28329910 DOI: 10.1002/Pro.3159  0.801
2017 Malik O, Kahamis H, Rudnizky S, Kaplan A. The Mechano-Chemistry of Reverse Transcriptase Biophysical Journal. 112: 514a. DOI: 10.1016/J.Bpj.2016.11.2779  0.728
2016 Rudnizky S, Bavly A, Malik O, Pnueli L, Melamed P, Kaplan A. H2A.Z controls the stability and mobility of nucleosomes to regulate expression of the LH genes. Nature Communications. 7: 12958. PMID 27653784 DOI: 10.1038/Ncomms12958  0.797
2016 Kaplan A. Force Spectroscopy of Nucleosomes at the Promoters of the Lh Genes Reveals two Distinct Strategies for their Regulation Biophysical Journal. 110: 68a. DOI: 10.1016/J.Bpj.2015.11.431  0.418
2014 Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Fredrik K, Noller H, Tinoco I, Bustamante CJ. Direct measurement of the mechanical work during translocation by the ribosome. Elife. 3: e03406. PMID 25114092 DOI: 10.7554/Elife.03406  0.745
2014 Liu T, Kaplan A, Alexander L, Yan S, Wen J, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Correction: Direct measurement of the mechanical work during translocation by the ribosome Elife. 3. DOI: 10.7554/Elife.04563  0.708
2014 Liu T, Kaplan A, Alexander L, Yan S, Wen J, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Author response: Direct measurement of the mechanical work during translocation by the ribosome Elife. DOI: 10.7554/Elife.03406.010  0.706
2014 Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Direct measurement of the mechanical work during translocation by the ribosome Elife. 3: 1-12. DOI: 10.7554/eLife.03406  0.69
2013 Kaplan A, Liu T, Wickersham C, Wen J, Lancaster L, Fredrick K, Noller HF, Tinoco I, Bustamante C. Mechanical Force during Translocation by the Ribosome Biophysical Journal. 104: 258a. DOI: 10.1016/J.Bpj.2012.11.1449  0.659
2010 Kaplan A, Aathavan K, Politzer A, Moffitt J, Chemla YR, Grimes S, Jardine PJ, Anderson DL, Bustamante CJ. Motor-Substrate Interactions in a Ring ATPase Biophysical Journal. 98: 594a. DOI: 10.1016/J.Bpj.2009.12.3233  0.809
2009 Aathavan K, Politzer AT, Kaplan A, Moffitt JR, Chemla YR, Grimes S, Jardine PJ, Anderson DL, Bustamante C. Substrate interactions and promiscuity in a viral DNA packaging motor. Nature. 461: 669-73. PMID 19794496 DOI: 10.1038/Nature08443  0.811
2006 Andersen MF, Kaplan A, Grünzweig T, Davidson N. Decay of quantum correlations in atom optics billiards with chaotic and mixed dynamics. Physical Review Letters. 97: 104102. PMID 17025821 DOI: 10.1103/Physrevlett.97.104102  0.774
2005 Kaplan A, Andersen MF, Grünzweig T, Davidson N. Hyperfine spectroscopy of optically trapped atoms Journal of Optics B: Quantum and Semiclassical Optics. 7: R103-R125. DOI: 10.1088/1464-4266/7/8/R01  0.779
2004 Andersen MF, Kaplan A, Grünzweig T, Davidson N. Suppression of dephasing of optically trapped atoms Physical Review A. 70. DOI: 10.1103/Physreva.70.013405  0.784
2004 Andersen MF, Grünzweig T, Kaplan A, Davidson N. Revivals of coherence in chaotic atom-optics billiards Physical Review A. 69. DOI: 10.1103/Physreva.69.063413  0.776
2004 Kaplan A, Friedman N, Andersen M, Davidson N. Stable regions and singular trajectories in chaotic soft-wall billiards Physica D: Nonlinear Phenomena. 187: 136-145. DOI: 10.1016/J.Physd.2003.09.010  0.52
2003 Andersen MF, Kaplan A, Davidson N. Echo spectroscopy and quantum stability of trapped atoms. Physical Review Letters. 90: 023001. PMID 12570542 DOI: 10.1103/Physrevlett.90.023001  0.535
2003 Andersen M, Kaplan A, Grünzweig T, Davidson N. Echo spectroscopy and atom optics billiards Communications in Nonlinear Science and Numerical Simulation. 8: 289-299. DOI: 10.1016/S1007-5704(03)00029-7  0.775
2002 Kaplan A, Friedman N, Davidson N. Optimized single-beam dark optical trap Journal of the Optical Society of America B. 19: 1233. DOI: 10.1364/Josab.19.001233  0.52
2002 Kaplan A, Fredslund Andersen M, Davidson N. Suppression of inhomogeneous broadening in rf spectroscopy of optically trapped atoms Physical Review A. 66. DOI: 10.1103/Physreva.66.045401  0.531
2002 Andersen MF, Kaplan A, Friedman N, Davidson N. Stable islands in chaotic atom-optics billiards, caused by curved trajectories Journal of Physics B: Atomic, Molecular and Optical Physics. 35: 2183-2190. DOI: 10.1088/0953-4075/35/9/315  0.555
2002 Friedman N, Kaplan A, Davidson N. Dark optical traps for cold atoms Advances in Atomic, Molecular and Optical Physics. 48: 99-151. DOI: 10.1016/S1049-250X(02)80007-6  0.54
2001 Kaplan A, Friedman N, Davidson N. Acousto-optic lens with very fast focus scanning. Optics Letters. 26: 1078-80. PMID 18049525 DOI: 10.1364/Ol.26.001078  0.517
2001 Kaplan A, Friedman N, Andersen M, Davidson N. Observation of islands of stability in soft wall atom-optics billiards. Physical Review Letters. 87: 274101. PMID 11800880 DOI: 10.1103/Physrevlett.87.274101  0.542
2001 Friedman N, Kaplan A, Carasso D, Davidson N. Observation of chaotic and regular dynamics in atom-optics billiards. Physical Review Letters. 86: 1518-21. PMID 11290182 DOI: 10.1103/Physrevlett.86.1518  0.54
2000 Friedman N, Kaplan A, Davidson N. Acousto-optic scanning system with very fast nonlinear scans. Optics Letters. 25: 1762-4. PMID 18066336 DOI: 10.1364/Ol.25.001762  0.507
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