| Year |
Citation |
Score |
| 2024 |
Jenniches L, Michaux C, Popella L, Reichardt S, Vogel J, Westermann AJ, Barquist L. Improved RNA stability estimation through Bayesian modeling reveals most transcripts have subminute half-lives. Proceedings of the National Academy of Sciences of the United States of America. 121: e2308814121. PMID 38527194 DOI: 10.1073/pnas.2308814121 |
0.547 |
|
| 2024 |
Putzeys L, Wicke L, Boon M, van Noort V, Vogel J, Lavigne R. Refining the transcriptional landscapes for distinct clades of virulent phages infecting . Microlife. 5: uqae002. PMID 38444699 DOI: 10.1093/femsml/uqae002 |
0.392 |
|
| 2024 |
Gerovac M, Chihara K, Wicke L, Böttcher B, Lavigne R, Vogel J. Phage proteins target and co-opt host ribosomes immediately upon infection. Nature Microbiology. 9: 787-800. PMID 38443577 DOI: 10.1038/s41564-024-01616-x |
0.374 |
|
| 2024 |
Ponath F, Zhu Y, Vogel J. Transcriptome fine-mapping in reveals FoxJ, a new σ-dependent small RNA with unusual mRNA activation activity. Mbio. e0353623. PMID 38436569 DOI: 10.1128/mbio.03536-23 |
0.471 |
|
| 2024 |
Ghosh C, Popella L, Dhamodharan V, Jung J, Dietzsch J, Barquist L, Höbartner C, Vogel J. A comparative analysis of peptide-delivered antisense antibiotics employing diverse nucleotide mimics. Rna (New York, N.Y.). PMID 38413166 DOI: 10.1261/rna.079969.124 |
0.523 |
|
| 2024 |
Zhu Y, Ponath F, Cosi V, Vogel J. A global survey of small RNA interactors identifies KhpA and KhpB as major RNA-binding proteins in Fusobacterium nucleatum. Nucleic Acids Research. PMID 38281181 DOI: 10.1093/nar/gkae010 |
0.525 |
|
| 2024 |
Putzeys L, Wicke L, Brandão A, Boon M, Pires DP, Azeredo J, Vogel J, Lavigne R, Gerovac M. Exploring the transcriptional landscape of phage-host interactions using novel high-throughput approaches. Current Opinion in Microbiology. 77: 102419. PMID 38271748 DOI: 10.1016/j.mib.2023.102419 |
0.529 |
|
| 2023 |
McQuail J, Matera G, Gräfenhan T, Bischler T, Haberkant P, Stein F, Vogel J, Wigneshweraraj S. Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery. Nucleic Acids Research. PMID 38142457 DOI: 10.1093/nar/gkad1211 |
0.531 |
|
| 2023 |
Vogel J, de Lorenzo V. EAM highlights in FEMS 2023: from the Petri dish to planet Earth. Microlife. 4: uqad045. PMID 38107236 DOI: 10.1093/femsml/uqad045 |
0.329 |
|
| 2023 |
Sparmann A, Vogel J. RNA-based medicine: from molecular mechanisms to therapy. The Embo Journal. e114760. PMID 37728251 DOI: 10.15252/embj.2023114760 |
0.502 |
|
| 2023 |
Okuda T, Lenz AK, Seitz F, Vogel J, Höbartner C. A SAM analogue-utilizing ribozyme for site-specific RNA alkylation in living cells. Nature Chemistry. PMID 37667013 DOI: 10.1038/s41557-023-01320-z |
0.526 |
|
| 2023 |
Homberger C, Hayward RJ, Barquist L, Vogel J. Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads. Mbio. e0355722. PMID 36880749 DOI: 10.1128/mbio.03557-22 |
0.463 |
|
| 2023 |
Jung JJ, Popella L, Do PT, Pfau P, Vogel J, Barquist L. Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON webserver. Rna (New York, N.Y.). PMID 36750372 DOI: 10.1261/rna.079263.122 |
0.481 |
|
| 2023 |
Jiao C, Reckstadt C, König F, Homberger C, Yu J, Vogel J, Westermann AJ, Sharma CM, Beisel CL. RNA recording in single bacterial cells using reprogrammed tracrRNAs. Nature Biotechnology. PMID 36604543 DOI: 10.1038/s41587-022-01604-8 |
0.519 |
|
| 2022 |
Michaux C, Gerovac M, Hansen EE, Barquist L, Vogel J. Grad-seq analysis of and provides a global view of RNA and protein complexes in these two opportunistic pathogens. Microlife. 4: uqac027. PMID 37223738 DOI: 10.1093/femsml/uqac027 |
0.58 |
|
| 2022 |
Homberger C, Barquist L, Vogel J. Ushering in a new era of single-cell transcriptomics in bacteria. Microlife. 3: uqac020. PMID 37223351 DOI: 10.1093/femsml/uqac020 |
0.446 |
|
| 2022 |
Homberger C, Saliba AE, Vogel J. A MATQ-seq-Based Protocol for Single-Cell RNA-seq in Bacteria. Methods in Molecular Biology (Clifton, N.J.). 2584: 105-121. PMID 36495446 DOI: 10.1007/978-1-0716-2756-3_4 |
0.517 |
|
| 2022 |
Chihara K, Gerovac M, Hör J, Vogel J. Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq). Rna (New York, N.Y.). PMID 36328526 DOI: 10.1261/rna.079439.122 |
0.551 |
|
| 2022 |
Hör J, Jung J, Ðurica-Mitić S, Barquist L, Vogel J. INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors. Nucleic Acids Research. PMID 36229039 DOI: 10.1093/nar/gkac838 |
0.366 |
|
| 2022 |
Ponath F, Zhu Y, Cosi V, Vogel J. Expanding the genetic toolkit helps dissect a global stress response in the early-branching species . Proceedings of the National Academy of Sciences of the United States of America. 119: e2201460119. PMID 36161895 DOI: 10.1073/pnas.2201460119 |
0.391 |
|
| 2022 |
Yair Y, Michaux C, Biran D, Bernhard J, Vogel J, Barquist L, Ron EZ. Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli. Msystems. e0008622. PMID 35695420 DOI: 10.1128/msystems.00086-22 |
0.477 |
|
| 2022 |
Solar Venero EC, Matera G, Vogel J, López NI, Tribelli PM. Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability and oxidative stress. Environmental Microbiology Reports. PMID 35689330 DOI: 10.1111/1758-2229.13084 |
0.461 |
|
| 2022 |
Popella L, Jung J, Do PT, Hayward RJ, Barquist L, Vogel J. Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli. Nucleic Acids Research. PMID 35687096 DOI: 10.1093/nar/gkac362 |
0.36 |
|
| 2022 |
Ponath F, Hör J, Vogel J. An overview of gene regulation in bacteria by small RNAs derived from mRNA 3' ends. Fems Microbiology Reviews. PMID 35388892 DOI: 10.1093/femsre/fuac017 |
0.517 |
|
| 2022 |
Halloy F, Biscans A, Bujold KE, Debacker A, Hill AC, Lacroix A, Luige O, Strömberg R, Sundstrom L, Vogel J, Ghidini A. Innovative developments and emerging technologies in RNA therapeutics. Rna Biology. 19: 313-332. PMID 35188077 DOI: 10.1080/15476286.2022.2027150 |
0.544 |
|
| 2022 |
Matera G, Altuvia Y, Gerovac M, El Mouali Y, Margalit H, Vogel J. Global RNA interactome of Salmonella discovers a 5' UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity. Molecular Cell. 82: 629-644.e4. PMID 35063132 DOI: 10.1016/j.molcel.2021.12.030 |
0.565 |
|
| 2021 |
Lamm-Schmidt V, Fuchs M, Sulzer J, Gerovac M, Hör J, Dersch P, Vogel J, Faber F. Grad-seq identifies KhpB as a global RNA-binding protein in that regulates toxin production. Microlife. 2: uqab004. PMID 37223250 DOI: 10.1093/femsml/uqab004 |
0.548 |
|
| 2021 |
El Mouali Y, Ponath F, Scharrer V, Wenner N, Hinton JC, Vogel J. Scanning mutagenesis of RNA-binding protein ProQ reveals a quality control role for the Lon protease. Rna (New York, N.Y.). PMID 34497069 DOI: 10.1261/rna.078954.121 |
0.49 |
|
| 2021 |
Islam MS, Bandyra KJ, Chao Y, Vogel J, Luisi BF. Impact of pseudo-uridylation, substrate fold and degradosome organization on the endonuclease activity of RNase E. Rna (New York, N.Y.). PMID 34341070 DOI: 10.1261/rna.078840.121 |
0.445 |
|
| 2021 |
Ponath F, Tawk C, Zhu Y, Barquist L, Faber F, Vogel J. RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum. Nature Microbiology. PMID 34239075 DOI: 10.1038/s41564-021-00927-7 |
0.525 |
|
| 2021 |
Fuchs M, Lamm-Schmidt V, Sulzer J, Ponath F, Jenniches L, Kirk JA, Fagan RP, Barquist L, Vogel J, Faber F. An RNA-centric global view of reveals broad activity of Hfq in a clinically important gram-positive bacterium. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34131082 DOI: 10.1073/pnas.2103579118 |
0.53 |
|
| 2021 |
El Mouali Y, Gerovac M, Mineikaitė R, Vogel J. In vivo targets of Salmonella FinO include a FinP-like small RNA controlling copy number of a cohabitating plasmid. Nucleic Acids Research. 49: 5319-5335. PMID 33939833 DOI: 10.1093/nar/gkab281 |
0.57 |
|
| 2021 |
Gerovac M, Vogel J, Smirnov A. The World of Stable Ribonucleoproteins and Its Mapping With Grad-Seq and Related Approaches. Frontiers in Molecular Biosciences. 8: 661448. PMID 33898526 DOI: 10.3389/fmolb.2021.661448 |
0.503 |
|
| 2021 |
Popella L, Jung J, Popova K, Ðurica-Mitić S, Barquist L, Vogel J. Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics. Nucleic Acids Research. PMID 33849070 DOI: 10.1093/nar/gkab242 |
0.54 |
|
| 2021 |
Hör J, Vogel J. Analysis of the RNA and Protein Complexome by Grad-seq. Methods in Molecular Biology (Clifton, N.J.). 2300: 183-201. PMID 33792881 DOI: 10.1007/978-1-0716-1386-3_16 |
0.487 |
|
| 2021 |
Westermann AJ, Vogel J. Cross-species RNA-seq for deciphering host-microbe interactions. Nature Reviews. Genetics. 22: 361-378. PMID 33597744 DOI: 10.1038/s41576-021-00326-y |
0.429 |
|
| 2021 |
Gerovac M, Wicke L, Chihara K, Schneider C, Lavigne R, Vogel J. A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions. Mbio. 12. PMID 33563827 DOI: 10.1128/mBio.03454-20 |
0.583 |
|
| 2021 |
Correia Santos S, Bischler T, Westermann AJ, Vogel J. MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT. Cell Reports. 34: 108722. PMID 33535041 DOI: 10.1016/j.celrep.2021.108722 |
0.488 |
|
| 2021 |
Wicke L, Ponath F, Coppens L, Gerovac M, Lavigne R, Vogel J. Introducing differential RNA-seq mapping to track the early infection phase for phage ɸKZ. Rna Biology. 18: 1099-1110. PMID 33103565 DOI: 10.1080/15476286.2020.1827785 |
0.367 |
|
| 2021 |
Lamm-Schmidt V, Fuchs M, Sulzer J, Gerovac M, Hör J, Dersch P, Vogel J, Faber F. Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production Microlife. 2. DOI: 10.1093/FEMSML/UQAB004 |
0.525 |
|
| 2020 |
Venturini E, Svensson SL, Maaß S, Gelhausen R, Eggenhofer F, Li L, Cain AK, Parkhill J, Becher D, Backofen R, Barquist L, Sharma CM, Westermann AJ, Vogel J. A global data-driven census of small proteins and their potential functions in bacterial virulence. Microlife. 1: uqaa002. PMID 37223003 DOI: 10.1093/femsml/uqaa002 |
0.343 |
|
| 2020 |
Schmidt N, Lareau CA, Keshishian H, Ganskih S, Schneider C, Hennig T, Melanson R, Werner S, Wei Y, Zimmer M, Ade J, Kirschner L, Zielinski S, Dölken L, Lander ES, ... ... Vogel J, et al. The SARS-CoV-2 RNA-protein interactome in infected human cells. Nature Microbiology. PMID 33349665 DOI: 10.1038/s41564-020-00846-z |
0.51 |
|
| 2020 |
Michaux C, Hansen EE, Jenniches L, Gerovac M, Barquist L, Vogel J. Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens and . Frontiers in Cellular and Infection Microbiology. 10: 600325. PMID 33324581 DOI: 10.3389/fcimb.2020.600325 |
0.473 |
|
| 2020 |
Seelbinder B, Wallstabe J, Marischen L, Weiss E, Wurster S, Page L, Löffler C, Bussemer L, Schmitt AL, Wolf T, Linde J, Cicin-Sain L, Becker J, Kalinke U, Vogel J, et al. Triple RNA-Seq Reveals Synergy in a Human Virus-Fungus Co-infection Model. Cell Reports. 33: 108389. PMID 33207195 DOI: 10.1016/j.celrep.2020.108389 |
0.446 |
|
| 2020 |
Hör J, Di Giorgio S, Gerovac M, Venturini E, Förstner KU, Vogel J. Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli. Nucleic Acids Research. 48: 9301-9319. PMID 32813020 DOI: 10.1093/nar/gkaa676 |
0.498 |
|
| 2020 |
Imdahl F, Vafadarnejad E, Homberger C, Saliba AE, Vogel J. Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria. Nature Microbiology. 5: 1202-1206. PMID 32807892 DOI: 10.1038/s41564-020-0774-1 |
0.471 |
|
| 2020 |
Gerovac M, El Mouali Y, Kuper J, Kisker C, Barquist L, Vogel J. Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein. Rna (New York, N.Y.). PMID 32646969 DOI: 10.1261/rna.076992.120 |
0.558 |
|
| 2020 |
Mika-Gospodorz B, Giengkam S, Westermann AJ, Wongsantichon J, Kion-Crosby W, Chuenklin S, Wang LC, Sunyakumthorn P, Sobota RM, Subbian S, Vogel J, Barquist L, Salje J. Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen. Nature Communications. 11: 3363. PMID 32620750 DOI: 10.1038/s41467-020-17094-8 |
0.481 |
|
| 2020 |
Bauriedl S, Gerovac M, Heidrich N, Bischler T, Barquist L, Vogel J, Schoen C. The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition. Nature Communications. 11: 2823. PMID 32499480 DOI: 10.1038/S41467-020-16650-6 |
0.553 |
|
| 2020 |
Prezza G, Heckel T, Dietrich S, Homberger C, Westermann AJ, Vogel J. Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads. Rna (New York, N.Y.). 26: 1069-1078. PMID 32345633 DOI: 10.1261/rna.075945.120 |
0.588 |
|
| 2020 |
Hör J, Garriss G, Di Giorgio S, Hack LM, Vanselow JT, Förstner KU, Schlosser A, Henriques-Normark B, Vogel J. Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control. The Embo Journal. 39: e103852. PMID 32227509 DOI: 10.15252/embj.2019103852 |
0.548 |
|
| 2020 |
Hör J, Matera G, Vogel J, Gottesman S, Storz G. Trans-Acting Small RNAs and Their Effects on Gene Expression in and . Ecosal Plus. 9. PMID 32213244 DOI: 10.1128/ecosalplus.ESP-0030-2019 |
0.486 |
|
| 2020 |
Vogel J. An RNA biology perspective on species-specific programmable RNA antibiotics. Molecular Microbiology. 113: 550-559. PMID 32185839 DOI: 10.1111/mmi.14476 |
0.509 |
|
| 2020 |
Venturini E, Svensson SL, Maaß S, Gelhausen R, Eggenhofer F, Li L, Cain AK, Parkhill J, Becher D, Backofen R, Barquist L, Sharma CM, Westermann AJ, Vogel J. A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence Microlife. 1. DOI: 10.1093/femsml/uqaa002 |
0.349 |
|
| 2019 |
Gerovac M, Vogel J. An RNA Surprise in Bacterial Effector Mechanisms. Cell Host & Microbe. 26: 709-711. PMID 31951583 DOI: 10.1016/j.chom.2019.11.005 |
0.459 |
|
| 2019 |
Wang C, Chao Y, Matera G, Gao Q, Vogel J. The conserved 3' UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration. Nucleic Acids Research. PMID 31863581 DOI: 10.1093/nar/gkz1168 |
0.478 |
|
| 2019 |
Chihara K, Bischler T, Barquist L, Monzon VA, Noda N, Vogel J, Tsuneda S. Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing. Msystems. 4. PMID 31796567 DOI: 10.1128/mSystems.00590-19 |
0.597 |
|
| 2019 |
Westermann AJ, Venturini E, Sellin ME, Förstner KU, Hardt WD, Vogel J. The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium. Mbio. 10. PMID 30602583 DOI: 10.1128/Mbio.02504-18 |
0.584 |
|
| 2019 |
Miyakoshi M, Matera G, Maki K, Sone Y, Vogel J. Functional expansion of a TCA cycle operon mRNA by a 3' end-derived small RNA. Nucleic Acids Research. 47: 2075-2088. PMID 30541135 DOI: 10.1093/nar/gky1243 |
0.53 |
|
| 2018 |
Yu SH, Vogel J, Förstner KU. ANNOgesic: A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes. Gigascience. PMID 30169674 DOI: 10.1093/Gigascience/Giy096 |
0.465 |
|
| 2018 |
Holmqvist E, Vogel J. RNA-binding proteins in bacteria. Nature Reviews. Microbiology. 16: 601-615. PMID 29995832 DOI: 10.1038/s41579-018-0049-5 |
0.589 |
|
| 2018 |
Holmqvist E, Li L, Bischler T, Barquist L, Vogel J. Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3' Ends. Molecular Cell. PMID 29804828 DOI: 10.1016/J.Molcel.2018.04.017 |
0.514 |
|
| 2018 |
Westermann AJ, Vogel J. Host-Pathogen Transcriptomics by Dual RNA-Seq. Methods in Molecular Biology (Clifton, N.J.). 1737: 59-75. PMID 29484587 DOI: 10.1007/978-1-4939-7634-8_4 |
0.531 |
|
| 2018 |
Hör J, Gorski SA, Vogel J. Bacterial RNA Biology on a Genome Scale. Molecular Cell. 70: 785-799. PMID 29358079 DOI: 10.1016/j.molcel.2017.12.023 |
0.604 |
|
| 2017 |
Smirnov A, Schneider C, Hör J, Vogel J. Discovery of new RNA classes and global RNA-binding proteins. Current Opinion in Microbiology. 39: 152-160. PMID 29179042 DOI: 10.1016/j.mib.2017.11.016 |
0.567 |
|
| 2017 |
Tawk C, Sharan M, Eulalio A, Vogel J. A systematic analysis of the RNA-targeting potential of secreted bacterial effector proteins. Scientific Reports. 7: 9328. PMID 28839189 DOI: 10.1038/S41598-017-09527-0 |
0.558 |
|
| 2017 |
Michaux C, Holmqvist E, Vasicek E, Sharan M, Barquist L, Westermann AJ, Gunn JS, Vogel J. RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE. Proceedings of the National Academy of Sciences of the United States of America. PMID 28611217 DOI: 10.1073/Pnas.1620772114 |
0.494 |
|
| 2017 |
Hershko-Shalev T, Odenheimer-Bergman A, Elgrably-Weiss M, Ben-Zvi T, Govindarajan S, Seri H, Papenfort K, Vogel J, Altuvia S. Correction: Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries. Plos Genetics. 13: e1006725. PMID 28410372 DOI: 10.1371/journal.pgen.1006725 |
0.416 |
|
| 2017 |
Smirnov A, Wang C, Drewry LL, Vogel J. Molecular mechanism of mRNA repression in trans by a ProQ-dependent small RNA. The Embo Journal. PMID 28336682 DOI: 10.15252/embj.201696127 |
0.536 |
|
| 2017 |
Sharan M, Förstner KU, Eulalio A, Vogel J. APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins. Nucleic Acids Research. PMID 28334975 DOI: 10.1093/Nar/Gkx137 |
0.401 |
|
| 2017 |
Heidrich N, Bauriedl S, Barquist L, Li L, Schoen C, Vogel J. The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq. Nucleic Acids Research. PMID 28334889 DOI: 10.1093/Nar/Gkx168 |
0.562 |
|
| 2017 |
Saliba AE, C Santos S, Vogel J. New RNA-seq approaches for the study of bacterial pathogens. Current Opinion in Microbiology. 35: 78-87. PMID 28214646 DOI: 10.1016/j.mib.2017.01.001 |
0.6 |
|
| 2017 |
Westermann AJ, Barquist L, Vogel J. Resolving host-pathogen interactions by dual RNA-seq. Plos Pathogens. 13: e1006033. PMID 28207848 DOI: 10.1371/journal.ppat.1006033 |
0.516 |
|
| 2017 |
Gorski SA, Vogel J, Doudna JA. RNA-based recognition and targeting: sowing the seeds of specificity. Nature Reviews. Molecular Cell Biology. PMID 28196981 DOI: 10.1038/nrm.2016.174 |
0.581 |
|
| 2017 |
Gonzalez G, Hardwick S, Maslen SL, Skehel JM, Holmqvist E, Vogel J, Bateman A, Luisi B, Broadhurst RW. Structure of the Escherichia coli ProQ RNA chaperone protein. Rna (New York, N.Y.). PMID 28193673 DOI: 10.1261/Rna.060343.116 |
0.436 |
|
| 2017 |
Chao Y, Li L, Girodat D, Förstner KU, Said N, Corcoran C, Śmiga M, Papenfort K, Reinhardt R, Wieden HJ, Luisi BF, Vogel J. In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell. 65: 39-51. PMID 28061332 DOI: 10.1016/J.Molcel.2016.11.002 |
0.561 |
|
| 2017 |
Hör J, Vogel J. Global snapshots of bacterial RNA networks. The Embo Journal. 36: 245-247. PMID 28031253 DOI: 10.15252/embj.201696072 |
0.45 |
|
| 2016 |
Berger P, Knödler M, Förstner KU, Berger M, Bertling C, Sharma CM, Vogel J, Karch H, Dobrindt U, Mellmann A. The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation. Scientific Reports. 6: 35307. PMID 27748404 DOI: 10.1038/srep35307 |
0.395 |
|
| 2016 |
Barquist L, Westermann AJ, Vogel J. Molecular phenotyping of infection-associated small non-coding RNAs. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27672158 DOI: 10.1098/rstb.2016.0081 |
0.425 |
|
| 2016 |
Smirnov A, Förstner KU, Holmqvist E, Otto A, Günster R, Becher D, Reinhardt R, Vogel J. Grad-seq guides the discovery of ProQ as a major small RNA-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 113: 11591-11596. PMID 27671629 DOI: 10.1073/pnas.1609981113 |
0.59 |
|
| 2016 |
Fröhlich KS, Haneke K, Papenfort K, Vogel J. The target spectrum of SdsR small RNA in Salmonella. Nucleic Acids Research. 44: 10406-10422. PMID 27407104 DOI: 10.1093/nar/gkw632 |
0.456 |
|
| 2016 |
Cao Y, Förstner KU, Vogel J, Smith CJ. Cis-encoded sRNAs, a conserved mechanism for repression of polysaccharide utilization in the Bacteroides. Journal of Bacteriology. PMID 27353652 DOI: 10.1128/JB.00381-16 |
0.367 |
|
| 2016 |
Das S, Lindemann C, Young BC, Muller J, Österreich B, Ternette N, Winkler AC, Paprotka K, Reinhardt R, Förstner KU, Allen E, Flaxman A, Yamaguchi Y, Rollier CS, van Diemen P, ... ... Vogel J, et al. Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27185949 DOI: 10.1073/Pnas.1520255113 |
0.34 |
|
| 2016 |
Hershko-Shalev T, Odenheimer-Bergman A, Elgrably-Weiss M, Ben-Zvi T, Govindarajan S, Seri H, Papenfort K, Vogel J, Altuvia S. Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries. Plos Genetics. 12: e1005975. PMID 27057757 DOI: 10.1371/journal.pgen.1005975 |
0.527 |
|
| 2016 |
Holmqvist E, Wright PR, Li L, Bischler T, Barquist L, Reinhardt R, Backofen R, Vogel J. Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. The Embo Journal. PMID 27044921 DOI: 10.15252/Embj.201593360 |
0.372 |
|
| 2016 |
Chao Y, Vogel J. A 3' UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response. Molecular Cell. 61: 352-363. PMID 26805574 DOI: 10.1016/j.molcel.2015.12.023 |
0.425 |
|
| 2016 |
Marbaniang CN, Vogel J. Emerging roles of RNA modifications in bacteria. Current Opinion in Microbiology. 30: 50-57. PMID 26803287 DOI: 10.1016/j.mib.2016.01.001 |
0.577 |
|
| 2016 |
Westermann AJ, Förstner KU, Amman F, Barquist L, Chao Y, Schulte LN, Müller L, Reinhardt R, Stadler PF, Vogel J. Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature. 529: 496-501. PMID 26789254 DOI: 10.1038/Nature16547 |
0.579 |
|
| 2016 |
Marbaniang CN, Vogel J. Emerging roles of RNA modifications in bacteria Current Opinion in Microbiology. 30: 50-57. DOI: 10.1016/j.mib.2016.01.001 |
0.576 |
|
| 2015 |
Fan B, Li L, Chao Y, Förstner K, Vogel J, Borriss R, Wu XQ. dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42. Plos One. 10: e0142002. PMID 26540162 DOI: 10.1371/Journal.Pone.0142002 |
0.478 |
|
| 2015 |
Barquist L, Vogel J. Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies. Annual Review of Genetics. PMID 26473381 DOI: 10.1146/annurev-genet-112414-054804 |
0.479 |
|
| 2015 |
Papenfort K, Espinosa E, Casadesús J, Vogel J. Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella. Proceedings of the National Academy of Sciences of the United States of America. 112: E4772-81. PMID 26307765 DOI: 10.1073/pnas.1507825112 |
0.503 |
|
| 2015 |
Heidrich N, Dugar G, Vogel J, Sharma CM. Investigating CRISPR RNA Biogenesis and Function Using RNA-seq. Methods in Molecular Biology (Clifton, N.J.). 1311: 1-21. PMID 25981463 DOI: 10.1007/978-1-4939-2687-9_1 |
0.586 |
|
| 2015 |
Ziebuhr W, Vogel J. The end is not the end: remnants of tRNA precursors live on to sponge up small regulatory RNAs. Molecular Cell. 58: 389-90. PMID 25957803 DOI: 10.1016/j.molcel.2015.04.032 |
0.545 |
|
| 2015 |
Miyakoshi M, Chao Y, Vogel J. Regulatory small RNAs from the 3' regions of bacterial mRNAs. Current Opinion in Microbiology. 24: 132-9. PMID 25677420 DOI: 10.1016/j.mib.2015.01.013 |
0.584 |
|
| 2015 |
Miyakoshi M, Chao Y, Vogel J. Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA. The Embo Journal. 34: 1478-92. PMID 25630703 DOI: 10.15252/embj.201490546 |
0.422 |
|
| 2015 |
Chao Y, Vogel J. A 3' UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response Molecular Cell. DOI: 10.1016/j.molcel.2015.12.023 |
0.394 |
|
| 2014 |
Dimastrogiovanni D, Fröhlich KS, Bandyra KJ, Bruce HA, Hohensee S, Vogel J, Luisi BF. Recognition of the small regulatory RNA RydC by the bacterial Hfq protein. Elife. 3. PMID 25551292 DOI: 10.7554/eLife.05375 |
0.566 |
|
| 2014 |
Förstner KU, Vogel J, Sharma CM. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data. Bioinformatics (Oxford, England). 30: 3421-3. PMID 25123900 DOI: 10.1093/bioinformatics/btu533 |
0.499 |
|
| 2014 |
Papenfort K, Vogel J. Small RNA functions in carbon metabolism and virulence of enteric pathogens. Frontiers in Cellular and Infection Microbiology. 4: 91. PMID 25077072 DOI: 10.3389/fcimb.2014.00091 |
0.44 |
|
| 2014 |
Saliba AE, Westermann AJ, Gorski SA, Vogel J. Single-cell RNA-seq: advances and future challenges. Nucleic Acids Research. 42: 8845-60. PMID 25053837 DOI: 10.1093/nar/gku555 |
0.451 |
|
| 2014 |
Sharma CM, Vogel J. Differential RNA-seq: the approach behind and the biological insight gained. Current Opinion in Microbiology. 19: 97-105. PMID 25024085 DOI: 10.1016/j.mib.2014.06.010 |
0.578 |
|
| 2014 |
Vogel J, Gottesman S, Belasco J, Narberhaus F. Meeting report: Regulating with RNA in Bacteria 2013. Rna Biology. 11: 403-12. PMID 24922515 DOI: 10.4161/Rna.29533 |
0.549 |
|
| 2013 |
Fröhlich KS, Papenfort K, Fekete A, Vogel J. A small RNA activates CFA synthase by isoform-specific mRNA stabilization. The Embo Journal. 32: 2963-79. PMID 24141880 DOI: 10.1038/emboj.2013.222 |
0.543 |
|
| 2013 |
Caldelari I, Chao Y, Romby P, Vogel J. RNA-mediated regulation in pathogenic bacteria. Cold Spring Harbor Perspectives in Medicine. 3: a010298. PMID 24003243 DOI: 10.1101/cshperspect.a010298 |
0.471 |
|
| 2013 |
Wright PR, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J. Comparative genomics boosts target prediction for bacterial small RNAs. Proceedings of the National Academy of Sciences of the United States of America. 110: E3487-96. PMID 23980183 DOI: 10.1073/pnas.1303248110 |
0.375 |
|
| 2013 |
Heidrich N, Vogel J. CRISPRs extending their reach: prokaryotic RNAi protein Cas9 recruited for gene regulation. The Embo Journal. 32: 1802-4. PMID 23756465 DOI: 10.1038/emboj.2013.141 |
0.382 |
|
| 2013 |
Zhang Y, Heidrich N, Ampattu BJ, Gunderson CW, Seifert HS, Schoen C, Vogel J, Sontheimer EJ. Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. Molecular Cell. 50: 488-503. PMID 23706818 DOI: 10.1016/J.Molcel.2013.05.001 |
0.39 |
|
| 2013 |
Holmqvist E, Vogel J. A small RNA serving both the Hfq and CsrA regulons. Genes & Development. 27: 1073-8. PMID 23699406 DOI: 10.1101/gad.220178.113 |
0.61 |
|
| 2013 |
Papenfort K, Sun Y, Miyakoshi M, Vanderpool CK, Vogel J. Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell. 153: 426-37. PMID 23582330 DOI: 10.1016/J.Cell.2013.03.003 |
0.556 |
|
| 2013 |
Göpel Y, Papenfort K, Reichenbach B, Vogel J, Görke B. Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA. Genes & Development. 27: 552-64. PMID 23475961 DOI: 10.1101/gad.210112.112 |
0.551 |
|
| 2012 |
Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J. An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. The Embo Journal. 31: 4005-19. PMID 22922465 DOI: 10.1038/emboj.2012.229 |
0.591 |
|
| 2012 |
Bandyra KJ, Said N, Pfeiffer V, Górna MW, Vogel J, Luisi BF. The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E. Molecular Cell. 47: 943-53. PMID 22902561 DOI: 10.1016/j.molcel.2012.07.015 |
0.522 |
|
| 2012 |
Westermann AJ, Gorski SA, Vogel J. Dual RNA-seq of pathogen and host. Nature Reviews. Microbiology. 10: 618-30. PMID 22890146 DOI: 10.1038/nrmicro2852 |
0.507 |
|
| 2012 |
Lioliou E, Sharma CM, Caldelari I, Helfer AC, Fechter P, Vandenesch F, Vogel J, Romby P. Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression. Plos Genetics. 8: e1002782. PMID 22761586 DOI: 10.1371/journal.pgen.1002782 |
0.54 |
|
| 2012 |
Corcoran CP, Rieder R, Podkaminski D, Hofmann B, Vogel J. Use of aptamer tagging to identify in vivo protein binding partners of small regulatory RNAs. Methods in Molecular Biology (Clifton, N.J.). 905: 177-200. PMID 22736004 DOI: 10.1007/978-1-61779-949-5_11 |
0.467 |
|
| 2012 |
Eulalio A, Schulte L, Vogel J. The mammalian microRNA response to bacterial infections. Rna Biology. 9: 742-50. PMID 22664920 DOI: 10.4161/rna.20018 |
0.327 |
|
| 2012 |
Rieder R, Reinhardt R, Sharma C, Vogel J. Experimental tools to identify RNA-protein interactions in Helicobacter pylori. Rna Biology. 9: 520-31. PMID 22546936 DOI: 10.4161/rna.20331 |
0.494 |
|
| 2012 |
Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hébrard M, Händler K, Colgan A, Leekitcharoenphon P, Langridge GC, Lohan AJ, Loftus B, ... ... Vogel J, et al. The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proceedings of the National Academy of Sciences of the United States of America. 109: E1277-86. PMID 22538806 DOI: 10.1073/pnas.1201061109 |
0.52 |
|
| 2012 |
Corcoran CP, Podkaminski D, Papenfort K, Urban JH, Hinton JC, Vogel J. Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA. Molecular Microbiology. 84: 428-45. PMID 22458297 DOI: 10.1111/j.1365-2958.2012.08031.x |
0.441 |
|
| 2012 |
Boehm A, Vogel J. The csgD mRNA as a hub for signal integration via multiple small RNAs. Molecular Microbiology. 84: 1-5. PMID 22414234 DOI: 10.1111/j.1365-2958.2012.08033.x |
0.43 |
|
| 2012 |
Argaman L, Elgrably-Weiss M, Hershko T, Vogel J, Altuvia S. RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq. Proceedings of the National Academy of Sciences of the United States of America. 109: 4621-6. PMID 22393021 DOI: 10.1073/pnas.1113113109 |
0.517 |
|
| 2012 |
Papenfort K, Podkaminski D, Hinton JC, Vogel J. The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proceedings of the National Academy of Sciences of the United States of America. 109: E757-64. PMID 22383560 DOI: 10.1073/pnas.1119414109 |
0.532 |
|
| 2012 |
Zhelyazkova P, Sharma CM, Förstner KU, Liere K, Vogel J, Börner T. The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. The Plant Cell. 24: 123-36. PMID 22267485 DOI: 10.1105/Tpc.111.089441 |
0.505 |
|
| 2012 |
Madhugiri R, Pessi G, Voss B, Hahn J, Sharma CM, Reinhardt R, Vogel J, Hess WR, Fischer HM, Evguenieva-Hackenberg E. Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis. Rna Biology. 9: 47-58. PMID 22258152 DOI: 10.4161/rna.9.1.18008 |
0.567 |
|
| 2012 |
Fröhlich KS, Papenfort K, Berger AA, Vogel J. A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Research. 40: 3623-40. PMID 22180532 DOI: 10.1093/nar/gkr1156 |
0.444 |
|
| 2012 |
Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J, Stadler PF, Bonas U. Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions. Nucleic Acids Research. 40: 2020-31. PMID 22080557 DOI: 10.1093/Nar/Gkr904 |
0.536 |
|
| 2011 |
Albrecht M, Sharma CM, Dittrich MT, Müller T, Reinhardt R, Vogel J, Rudel T. The transcriptional landscape of Chlamydia pneumoniae. Genome Biology. 12: R98. PMID 21989159 DOI: 10.1186/Gb-2011-12-10-R98 |
0.422 |
|
| 2011 |
Storz G, Vogel J, Wassarman KM. Regulation by small RNAs in bacteria: expanding frontiers. Molecular Cell. 43: 880-91. PMID 21925377 DOI: 10.1016/J.Molcel.2011.08.022 |
0.557 |
|
| 2011 |
Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA. Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proceedings of the National Academy of Sciences of the United States of America. 108: 12875-80. PMID 21768388 DOI: 10.1073/Pnas.1109379108 |
0.381 |
|
| 2011 |
Vogel J, Luisi BF. Hfq and its constellation of RNA. Nature Reviews. Microbiology. 9: 578-89. PMID 21760622 DOI: 10.1038/nrmicro2615 |
0.571 |
|
| 2011 |
Sharma CM, Papenfort K, Pernitzsch SR, Mollenkopf HJ, Hinton JC, Vogel J. Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Molecular Microbiology. 81: 1144-65. PMID 21696468 DOI: 10.1111/j.1365-2958.2011.07751.x |
0.346 |
|
| 2011 |
Berghoff BA, Glaeser J, Sharma CM, Zobawa M, Lottspeich F, Vogel J, Klug G. Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides. Molecular Microbiology. 80: 1479-95. PMID 21535243 DOI: 10.1111/j.1365-2958.2011.07658.x |
0.393 |
|
| 2011 |
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature. 471: 602-7. PMID 21455174 DOI: 10.1038/nature09886 |
0.551 |
|
| 2011 |
Eulalio A, Fröhlich KS, Mano M, Giacca M, Vogel J. A candidate approach implicates the secreted Salmonella effector protein SpvB in P-body disassembly. Plos One. 6: e17296. PMID 21390246 DOI: 10.1371/Journal.Pone.0017296 |
0.334 |
|
| 2011 |
Papenfort K, Vogel J. Sweet business: Spot42 RNA networks with CRP to modulate catabolite repression. Molecular Cell. 41: 245-6. PMID 21292156 DOI: 10.1016/j.molcel.2011.01.011 |
0.487 |
|
| 2011 |
Mitschke J, Georg J, Scholz I, Sharma CM, Dienst D, Bantscheff J, Voss B, Steglich C, Wilde A, Vogel J, Hess WR. An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proceedings of the National Academy of Sciences of the United States of America. 108: 2124-9. PMID 21245330 DOI: 10.1073/pnas.1015154108 |
0.427 |
|
| 2010 |
Podkaminski D, Vogel J. Small RNAs promote mRNA stability to activate the synthesis of virulence factors. Molecular Microbiology. 78: 1327-31. PMID 21143308 DOI: 10.1111/j.1365-2958.2010.07428.x |
0.549 |
|
| 2010 |
Papenfort K, Bouvier M, Mika F, Sharma CM, Vogel J. Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA. Proceedings of the National Academy of Sciences of the United States of America. 107: 20435-40. PMID 21059903 DOI: 10.1073/pnas.1009784107 |
0.458 |
|
| 2010 |
Papenfort K, Vogel J. Regulatory RNA in bacterial pathogens. Cell Host & Microbe. 8: 116-27. PMID 20638647 DOI: 10.1016/j.chom.2010.06.008 |
0.495 |
|
| 2010 |
Irnov I, Sharma CM, Vogel J, Winkler WC. Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Research. 38: 6637-51. PMID 20525796 DOI: 10.1093/Nar/Gkq454 |
0.595 |
|
| 2010 |
Bohn C, Rigoulay C, Chabelskaya S, Sharma CM, Marchais A, Skorski P, Borezée-Durant E, Barbet R, Jacquet E, Jacq A, Gautheret D, Felden B, Vogel J, Bouloc P. Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Research. 38: 6620-36. PMID 20511587 DOI: 10.1093/Nar/Gkq462 |
0.438 |
|
| 2010 |
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, Sittka A, Chabas S, Reiche K, Hackermüller J, Reinhardt R, Stadler PF, Vogel J. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature. 464: 250-5. PMID 20164839 DOI: 10.1038/Nature08756 |
0.526 |
|
| 2010 |
Chao Y, Vogel J. The role of Hfq in bacterial pathogens. Current Opinion in Microbiology. 13: 24-33. PMID 20080057 DOI: 10.1016/j.mib.2010.01.001 |
0.555 |
|
| 2010 |
Albrecht M, Sharma CM, Reinhardt R, Vogel J, Rudel T. Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Research. 38: 868-77. PMID 19923228 DOI: 10.1093/Nar/Gkp1032 |
0.467 |
|
| 2009 |
Jäger D, Sharma CM, Thomsen J, Ehlers C, Vogel J, Schmitz RA. Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proceedings of the National Academy of Sciences of the United States of America. 106: 21878-82. PMID 19996181 DOI: 10.1073/pnas.0909051106 |
0.311 |
|
| 2009 |
Fröhlich KS, Vogel J. Activation of gene expression by small RNA. Current Opinion in Microbiology. 12: 674-82. PMID 19880344 DOI: 10.1016/j.mib.2009.09.009 |
0.527 |
|
| 2009 |
Sharma CM, Vogel J. Experimental approaches for the discovery and characterization of regulatory small RNA. Current Opinion in Microbiology. 12: 536-46. PMID 19758836 DOI: 10.1016/j.mib.2009.07.006 |
0.554 |
|
| 2009 |
Narberhaus F, Vogel J. Regulatory RNAs in prokaryotes: here, there and everywhere. Molecular Microbiology. 74: 261-9. PMID 19732342 DOI: 10.1111/j.1365-2958.2009.06869.x |
0.555 |
|
| 2009 |
Papenfort K, Said N, Welsink T, Lucchini S, Hinton JC, Vogel J. Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Molecular Microbiology. 74: 139-58. PMID 19732340 DOI: 10.1111/j.1365-2958.2009.06857.x |
0.516 |
|
| 2009 |
Said N, Rieder R, Hurwitz R, Deckert J, Urlaub H, Vogel J. In vivo expression and purification of aptamer-tagged small RNA regulators Nucleic Acids Research. 37. PMID 19726584 DOI: 10.1093/nar/gkp719 |
0.468 |
|
| 2009 |
Vogel J. An RNA trap helps bacteria get the most out of chitosugars. Molecular Microbiology. 73: 737-41. PMID 19659640 DOI: 10.1111/j.1365-2958.2009.06806.x |
0.565 |
|
| 2009 |
Pfeiffer V, Papenfort K, Lucchini S, Hinton JC, Vogel J. Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nature Structural & Molecular Biology. 16: 840-6. PMID 19620966 DOI: 10.1038/nsmb.1631 |
0.466 |
|
| 2009 |
Urban JH, Vogel J. A green fluorescent protein (GFP)-based plasmid system to study post-transcriptional control of gene expression in vivo. Methods in Molecular Biology (Clifton, N.J.). 540: 301-19. PMID 19381569 DOI: 10.1007/978-1-59745-558-9_22 |
0.39 |
|
| 2009 |
Papenfort K, Vogel J. Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Research in Microbiology. 160: 278-87. PMID 19366629 DOI: 10.1016/j.resmic.2009.03.004 |
0.506 |
|
| 2009 |
Sittka A, Sharma CM, Rolle K, Vogel J. Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. Rna Biology. 6: 266-75. PMID 19333007 DOI: 10.4161/rna.6.3.8332 |
0.571 |
|
| 2009 |
Görke B, Vogel J. Noncoding RNA control of the making and breaking of sugars. Genes & Development. 22: 2914-25. PMID 18981470 DOI: 10.1101/gad.1717808 |
0.574 |
|
| 2008 |
Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J. Small RNA binding to 5' mRNA coding region inhibits translational initiation. Molecular Cell. 32: 827-37. PMID 19111662 DOI: 10.1016/j.molcel.2008.10.027 |
0.415 |
|
| 2008 |
Vogel J. A rough guide to the non-coding RNA world of Salmonella. Molecular Microbiology. 71: 1-11. PMID 19007416 DOI: 10.1111/j.1365-2958.2008.06505.x |
0.594 |
|
| 2008 |
Sittka A, Vogel J. A glimpse at the evolution of virulence control. Cell Host & Microbe. 4: 310-2. PMID 18854234 DOI: 10.1016/j.chom.2008.09.006 |
0.33 |
|
| 2008 |
Dienst D, Dühring U, Mollenkopf HJ, Vogel J, Golecki J, Hess WR, Wilde A. The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803. Microbiology (Reading, England). 154: 3134-43. PMID 18832319 DOI: 10.1099/mic.0.2008/020222-0 |
0.4 |
|
| 2008 |
Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JC, Vogel J. Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. Plos Genetics. 4: e1000163. PMID 18725932 DOI: 10.1371/journal.pgen.1000163 |
0.602 |
|
| 2008 |
Song T, Mika F, Lindmark B, Liu Z, Schild S, Bishop A, Zhu J, Camilli A, Johansson J, Vogel J, Wai SN. A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles. Molecular Microbiology. 70: 100-11. PMID 18681937 DOI: 10.1111/J.1365-2958.2008.06392.X |
0.401 |
|
| 2008 |
Papenfort K, Pfeiffer V, Lucchini S, Sonawane A, Hinton JC, Vogel J. Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis. Molecular Microbiology. 68: 890-906. PMID 18399940 DOI: 10.1111/j.1365-2958.2008.06189.x |
0.535 |
|
| 2008 |
Urban JH, Vogel J. Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. Plos Biology. 6: e64. PMID 18351803 DOI: 10.1371/journal.pbio.0060064 |
0.55 |
|
| 2008 |
Sharma CM, Darfeuille F, Plantinga TH, Vogel J. A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes & Development. 21: 2804-17. PMID 17974919 DOI: 10.1101/GAD.447207 |
0.368 |
|
| 2007 |
Narberhaus F, Vogel J. Sensory and regulatory RNAs in prokaryotes: a new German research focus. Rna Biology. 4: 160-4. PMID 18059194 DOI: 10.4161/rna.4.3.5308 |
0.451 |
|
| 2007 |
Viegas SC, Pfeiffer V, Sittka A, Silva IJ, Vogel J, Arraiano CM. Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Research. 35: 7651-64. PMID 17982174 DOI: 10.1093/nar/gkm916 |
0.514 |
|
| 2007 |
Pfeiffer V, Sittka A, Tomer R, Tedin K, Brinkmann V, Vogel J. A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Molecular Microbiology. 66: 1174-91. PMID 17971080 DOI: 10.1111/J.1365-2958.2007.05991.X |
0.549 |
|
| 2007 |
Urban JH, Papenfort K, Thomsen J, Schmitz RA, Vogel J. A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis. Journal of Molecular Biology. 373: 521-8. PMID 17854828 DOI: 10.1016/j.jmb.2007.07.035 |
0.427 |
|
| 2007 |
Vogel J, Wagner EG. Target identification of small noncoding RNAs in bacteria. Current Opinion in Microbiology. 10: 262-70. PMID 17574901 DOI: 10.1016/J.MIB.2007.06.001 |
0.496 |
|
| 2007 |
Darfeuille F, Unoson C, Vogel J, Wagner EG. An antisense RNA inhibits translation by competing with standby ribosomes. Molecular Cell. 26: 381-92. PMID 17499044 DOI: 10.1016/J.MOLCEL.2007.04.003 |
0.466 |
|
| 2007 |
Urban JH, Vogel J. Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Research. 35: 1018-37. PMID 17264113 DOI: 10.1093/nar/gkl1040 |
0.411 |
|
| 2006 |
Papenfort K, Pfeiffer V, Mika F, Lucchini S, Hinton JC, Vogel J. SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Molecular Microbiology. 62: 1674-88. PMID 17427289 DOI: 10.1111/j.1365-2958.2006.05524.x |
0.461 |
|
| 2006 |
Sittka A, Pfeiffer V, Tedin K, Vogel J. The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Molecular Microbiology. 63: 193-217. PMID 17163975 DOI: 10.1111/j.1365-2958.2006.05489.x |
0.475 |
|
| 2006 |
Vogel J, Papenfort K. Small non-coding RNAs and the bacterial outer membrane. Current Opinion in Microbiology. 9: 605-11. PMID 17055775 DOI: 10.1016/J.MIB.2006.10.006 |
0.474 |
|
| 2006 |
Hüttenhofer A, Vogel J. Experimental approaches to identify non-coding RNAs. Nucleic Acids Research. 34: 635-46. PMID 16436800 DOI: 10.1093/nar/gkj469 |
0.521 |
|
| 2006 |
Vogel J, Sharma CM. How to find small non-coding RNAs in bacteria. Biological Chemistry. 386: 1219-38. PMID 16336117 DOI: 10.1515/BC.2005.140 |
0.561 |
|
| 2005 |
Udekwu KI, Darfeuille F, Vogel J, Reimegård J, Holmqvist E, Wagner EG. Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes & Development. 19: 2355-66. PMID 16204185 DOI: 10.1101/Gad.354405 |
0.396 |
|
| 2005 |
Axmann IM, Kensche P, Vogel J, Kohl S, Herzel H, Hess WR. Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biology. 6: R73. PMID 16168080 DOI: 10.1186/Gb-2005-6-9-R73 |
0.435 |
|
| 2005 |
Vogel J, Argaman L, Wagner EG, Altuvia S. The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide. Current Biology : Cb. 14: 2271-6. PMID 15620655 DOI: 10.1016/j.cub.2004.12.003 |
0.436 |
|
| 2003 |
Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, Wagner EG. RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Research. 31: 6435-43. PMID 14602901 DOI: 10.1093/nar/gkg867 |
0.532 |
|
| 2001 |
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Current Biology : Cb. 11: 941-50. PMID 11448770 DOI: 10.1016/S0960-9822(01)00270-6 |
0.59 |
|
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