Nicholas T. Ingolia, Ph.D.

Molecular and Cell Biology University of California, Berkeley, Berkeley, CA 
 2006 Harvard University, Cambridge, MA, United States 
Molecular basis and physiological roles of the Translational control of gene expression through global and genome-wide analyses
"Nicholas Ingolia"


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Andrew W. Murray grad student 2006 Harvard
 (Bistability and positive feedback in genetic networks.)
Jonathan S. Weissman post-doc (Chemistry Tree)


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Shintaro Iwasaki post-doc 2013-2016 (Chemistry Tree)
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Mudge JM, Ruiz-Orera J, Prensner JR, et al. (2022) Standardized annotation of translated open reading frames. Nature Biotechnology
Muller RY, Meacham ZA, Ingolia NT. (2022) Plasmid and Sequencing Library Preparation for CRISPRi Barcoded Expression Reporter Sequencing (CiBER-seq) in . Bio-Protocol. 12: e4376
Padrón A, Ingolia N. (2022) Analyzing the Composition and Organization of Ribonucleoprotein Complexes by APEX-Seq. Methods in Molecular Biology (Clifton, N.J.). 2428: 277-289
Mendez AS, Ly M, González-Sánchez AM, et al. (2021) The N-terminal domain of SARS-CoV-2 nsp1 plays key roles in suppression of cellular gene expression and preservation of viral gene expression. Cell Reports. 109841
Galez HA, Roelants FM, Palm SM, et al. (2021) Phosphorylation of mRNA-Binding Proteins Puf1 and Puf2 by TORC2-Activated Protein Kinase Ypk1 Alleviates Their Repressive Effects. Membranes. 11
Chen M, Asanuma M, Takahashi M, et al. (2020) Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A. Cell Chemical Biology
Matsuki Y, Matsuo Y, Nakano Y, et al. (2020) Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome. Scientific Reports. 10: 19669
Kim JW, Yin X, Jhaldiyal A, et al. (2020) Defects in mRNA Translation in LRRK2-Mutant hiPSC-Derived Dopaminergic Neurons Lead to Dysregulated Calcium Homeostasis. Cell Stem Cell
Padrón A, Iwasaki S, Ingolia NT. (2019) Proximity RNA Labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules. Molecular Cell. 75: 875-887.e5
Pulos-Holmes MC, Srole DN, Juarez MG, et al. (2019) Repression of ferritin light chain translation by human eIF3. Elife. 8
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