David C. King

2009 Bioinformatics and Genomics Pennsylvania State University, State College, PA, United States 
"David King"


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Ross C. Hardison grad student 2009 Penn State
 (Phylogenetic conservation of cis-regulatory regions using sequence alignability and cladistic motifs.)
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Cascarina SM, King DC, Osborne Nishimura E, et al. (2021) LCD-Composer: an intuitive, composition-centric method enabling the identification and detailed functional mapping of low-complexity domains. Nar Genomics and Bioinformatics. 3: lqab048
Kapuscinski ML, Bergren NA, Russell BJ, et al. (2021) Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses. Plos Pathogens. 17: e1009315
Cheng Y, Wu W, Kumar SA, et al. (2009) Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. Genome Research. 19: 2172-84
Zhang Y, Wu W, Cheng Y, et al. (2009) Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1. Nucleic Acids Research. 37: 7024-38
Cheng Y, King DC, Dore LC, et al. (2008) Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. Genome Research. 18: 1896-905
Yang MQ, King DC, Elnitski LL. (2008) Feature Characterization and Testing of Bidirectional Promoters in the Human Genome-Significance and Applications in Human Genome Research Machine Learning in Bioinformatics. 321-338
Miller W, Rosenbloom K, Hardison RC, et al. (2007) 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Research. 17: 1797-808
King DC, Taylor J, Zhang Y, et al. (2007) Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data. Genome Research. 17: 775-86
Taylor J, Tyekucheva S, King DC, et al. (2006) ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements. Genome Research. 16: 1596-604
Wang H, Zhang Y, Cheng Y, et al. (2006) Experimental validation of predicted mammalian erythroid cis-regulatory modules. Genome Research. 16: 1480-92
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