| Year |
Citation |
Score |
| 2021 |
Flores SC, Alexiou A, Glaros A. Mining the Protein Data Bank to improve prediction of changes in protein-protein binding. Plos One. 16: e0257614. PMID 34727109 DOI: 10.1371/journal.pone.0257614 |
0.39 |
|
| 2017 |
Nosrati M, Solbak S, Nordesjö O, Nissbeck M, Dourado DFAR, Andersson KG, Housaindokht MR, Löfblom J, Virtanen A, Danielson UH, Flores SC. Insights from engineering the Affibody-Fc interaction with a computational-experimental method. Protein Engineering, Design & Selection : Peds. 1-9. PMID 28472513 DOI: 10.1093/Protein/Gzx023 |
0.394 |
|
| 2016 |
Cheng RR, Nordesjö O, Hayes RL, Levine H, Flores SC, Onuchic JN, Morcos F. Connecting the sequence-space of bacterial signaling proteins to phenotypes using coevolutionary landscapes. Molecular Biology and Evolution. PMID 27604223 DOI: 10.1093/Molbev/Msw188 |
0.403 |
|
| 2016 |
Dourado DF, Flores SC. Modeling and fitting protein-protein complexes to predict change of binding energy. Scientific Reports. 6: 25406. PMID 27173910 DOI: 10.1038/Srep25406 |
0.465 |
|
| 2015 |
Tek A, Korostelev AA, Flores SC. MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory. Nucleic Acids Research. PMID 26673695 DOI: 10.1093/Nar/Gkv1457 |
0.429 |
|
| 2015 |
Fiesel FC, Caulfield TR, Moussaud-Lamodière EL, Ogaki K, Dourado DF, Flores SC, Ross OA, Springer W. Structural and Functional Impact of Parkinson Disease-Associated Mutations in the E3 Ubiquitin Ligase Parkin. Human Mutation. 36: 774-86. PMID 25939424 DOI: 10.1002/Humu.22808 |
0.375 |
|
| 2014 |
Caulfield TR, Fiesel FC, Moussaud-Lamodière EL, Dourado DF, Flores SC, Springer W. Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin. Plos Computational Biology. 10: e1003935. PMID 25375667 DOI: 10.1371/Journal.Pcbi.1003935 |
0.393 |
|
| 2014 |
Dourado DF, Flores SC. A multiscale approach to predicting affinity changes in protein-protein interfaces. Proteins. 82: 2681-90. PMID 24975440 DOI: 10.1002/Prot.24634 |
0.432 |
|
| 2014 |
Flores SC. Fast fitting to low resolution density maps: elucidating large-scale motions of the ribosome. Nucleic Acids Research. 42: e9. PMID 24081579 DOI: 10.1093/Nar/Gkt906 |
0.384 |
|
| 2014 |
Flores SC. Elucidating Ribosomal Translocation with Internal Coordinate Flexible Fitting Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2754 |
0.337 |
|
| 2014 |
Tek A, Chen Y, Selmer M, Flores SC. Investigating Ribosome Conformations with Multi-Resolution Modeling Biophysical Journal. 106: 491a. DOI: 10.1016/J.Bpj.2013.11.2744 |
0.399 |
|
| 2013 |
Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, ... ... Flores S, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 81: 1980-7. PMID 23843247 DOI: 10.1002/Prot.24356 |
0.411 |
|
| 2012 |
Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, et al. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. Rna (New York, N.Y.). 18: 610-25. PMID 22361291 DOI: 10.1261/Rna.031054.111 |
0.379 |
|
| 2012 |
Flores SC, Bernauer J, Shin S, Zhou R, Huang X. Multiscale modeling of macromolecular biosystems. Briefings in Bioinformatics. 13: 395-405. PMID 22228511 DOI: 10.1093/Bib/Bbr077 |
0.353 |
|
| 2011 |
Flores SC, Gerstein MB. Predicting protein ligand binding motions with the conformation explorer. Bmc Bioinformatics. 12: 417. PMID 22032721 DOI: 10.1186/1471-2105-12-417 |
0.573 |
|
| 2011 |
Flores SC, Sherman MA, Bruns CM, Eastman P, Altman RB. Fast flexible modeling of RNA structure using internal coordinates. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 1247-57. PMID 21778523 DOI: 10.1109/Tcbb.2010.104 |
0.404 |
|
| 2011 |
Poursina M, Bhalerao KD, Flores SC, Anderson KS, Laederach A. Strategies for articulated multibody-based adaptive coarse grain simulation of RNA. Methods in Enzymology. 487: 73-98. PMID 21187222 DOI: 10.1016/B978-0-12-381270-4.00003-2 |
0.376 |
|
| 2010 |
Flores SC, Altman RB. Turning limited experimental information into 3D models of RNA. Rna (New York, N.Y.). 16: 1769-78. PMID 20651028 DOI: 10.1261/Rna.2112110 |
0.381 |
|
| 2009 |
Keating KS, Flores SC, Gerstein MB, Kuhn LA. StoneHinge: hinge prediction by network analysis of individual protein structures. Protein Science : a Publication of the Protein Society. 18: 359-71. PMID 19180449 DOI: 10.1002/Pro.38 |
0.57 |
|
| 2008 |
Flores SC, Keating KS, Painter J, Morcos F, Nguyen K, Merritt EA, Kuhn LA, Gerstein MB. HingeMaster: normal mode hinge prediction approach and integration of complementary predictors. Proteins. 73: 299-319. PMID 18433058 DOI: 10.1002/Prot.22060 |
0.547 |
|
| 2007 |
Flores SC, Gerstein MB. FlexOracle: predicting flexible hinges by identification of stable domains. Bmc Bioinformatics. 8: 215. PMID 17587456 DOI: 10.1186/1471-2105-8-215 |
0.579 |
|
| 2007 |
Flores SC, Lu LJ, Yang J, Carriero N, Gerstein MB. Hinge Atlas: relating protein sequence to sites of structural flexibility. Bmc Bioinformatics. 8: 167. PMID 17519025 DOI: 10.1186/1471-2105-8-167 |
0.554 |
|
| 2006 |
Yu S, Fan F, Flores SC, Mei F, Cheng X. Dissecting the mechanism of Epac activation via hydrogen-deuterium exchange FT-IR and structural modeling. Biochemistry. 45: 15318-26. PMID 17176054 DOI: 10.1021/Bi061701X |
0.414 |
|
| 2006 |
Flores S, Echols N, Milburn D, Hespenheide B, Keating K, Lu J, Wells S, Yu EZ, Thorpe M, Gerstein M. The Database of Macromolecular Motions: new features added at the decade mark. Nucleic Acids Research. 34: D296-301. PMID 16381870 DOI: 10.1093/Nar/Gkj046 |
0.517 |
|
| Show low-probability matches. |