| Year |
Citation |
Score |
| 2012 |
Clark ME, He Z, Redding AM, Joachimiak MP, Keasling JD, Zhou JZ, Arkin AP, Mukhopadhyay A, Fields MW. Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state. Bmc Genomics. 13: 138. PMID 22507456 DOI: 10.1186/1471-2164-13-138 |
0.321 |
|
| 2012 |
Dey SS, Xue Y, Joachimiak MP, Friedland GD, Burnett JC, Zhou Q, Arkin AP, Schaffer DV. Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression. The Journal of Biological Chemistry. 287: 7945-55. PMID 22253435 DOI: 10.1074/Jbc.M111.302653 |
0.363 |
|
| 2012 |
Zhou A, Chen YI, Zane GM, He Z, Hemme CL, Joachimiak MP, Baumohl JK, He Q, Fields MW, Arkin AP, Wall JD, Hazen TC, Zhou J. Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough. Applied and Environmental Microbiology. 78: 1168-77. PMID 22156435 DOI: 10.1128/Aem.05666-11 |
0.305 |
|
| 2011 |
Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price MN, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, et al. Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough. Plos One. 6: e21470. PMID 21738675 DOI: 10.1371/Journal.Pone.0021470 |
0.357 |
|
| 2011 |
Sundararajan A, Kurowski J, Yan T, Klingeman DM, Joachimiak MP, Zhou J, Naranjo B, Gralnick JA, Fields MW. Shewanella oneidensis MR-1 sensory box protein involved in aerobic and anoxic growth. Applied and Environmental Microbiology. 77: 4647-56. PMID 21602393 DOI: 10.1128/Aem.03003-10 |
0.355 |
|
| 2011 |
Pastuszak AW, Joachimiak MP, Blanchette M, Rio DC, Brenner SE, Frankel AD. An SF1 affinity model to identify branch point sequences in human introns. Nucleic Acids Research. 39: 2344-56. PMID 21071404 DOI: 10.1093/Nar/Gkq1046 |
0.324 |
|
| 2010 |
He Z, Zhou A, Baidoo E, He Q, Joachimiak MP, Benke P, Phan R, Mukhopadhyay A, Hemme CL, Huang K, Alm EJ, Fields MW, Wall J, Stahl D, Hazen TC, et al. Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Applied and Environmental Microbiology. 76: 1574-86. PMID 20038696 DOI: 10.1128/Aem.02141-09 |
0.324 |
|
| 2010 |
Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Research. 38: D396-400. PMID 19906701 DOI: 10.1093/Nar/Gkp919 |
0.38 |
|
| 2010 |
Burns A, Joachimiak M, Deutschbauer A, Arkin A, Bender K. Identification of Small RNAs in Desulfovibrio vulgaris Hildenborough Lawrence Berkeley National Laboratory. DOI: 10.2172/985922 |
0.351 |
|
| 2010 |
Timberlake S, Joachimiak M, Joyner D, Chakraborty R, Baumohl J, Dehal P, Arkin A, Hazen T, Alm E. Conservation of Modules but not Phenotype in Bacterial Response to Environmental Stress Lawrence Berkeley National Laboratory. DOI: 10.2172/985921 |
0.319 |
|
| 2010 |
Rajeev L, Luning E, Dehal P, Joachimiak M, Mukhopadhyay A. Mapping the Two-component Regulatory Networks in Desulfovibrio vulgaris Lawrence Berkeley National Laboratory. DOI: 10.2172/985735 |
0.304 |
|
| 2009 |
Elias DA, Mukhopadhyay A, Joachimiak MP, Drury EC, Redding AM, Yen HC, Fields MW, Hazen TC, Arkin AP, Keasling JD, Wall JD. Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation. Nucleic Acids Research. 37: 2926-39. PMID 19293273 DOI: 10.1093/Nar/Gkp164 |
0.346 |
|
| 2007 |
Stolyar S, He Q, Joachimiak MP, He Z, Yang ZK, Borglin SE, Joyner DC, Huang K, Alm E, Hazen TC, Zhou J, Wall JD, Arkin AP, Stahl DA. Response of Desulfovibrio vulgaris to alkaline stress. Journal of Bacteriology. 189: 8944-52. PMID 17921288 DOI: 10.1128/Jb.00284-07 |
0.308 |
|
| 2007 |
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, ... Joachimiak MP, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Plos Biology. 5: e16. PMID 17355171 DOI: 10.1371/Journal.Pbio.0050016 |
0.4 |
|
| 2003 |
Bozdech Z, Zhu J, Joachimiak MP, Cohen FE, Pulliam B, DeRisi JL. Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biology. 4: R9. PMID 12620119 DOI: 10.1186/Gb-2003-4-2-R9 |
0.493 |
|
| 2002 |
Joachimiak MP, Cohen FE. JEvTrace: refinement and variations of the evolutionary trace in JAVA. Genome Biology. 3: RESEARCH0077. PMID 12537566 DOI: 10.1186/Gb-2002-3-12-Research0077 |
0.525 |
|
| 2001 |
Joachimiak MP, Chang C, Rosenthal PJ, Cohen FE. The impact of whole genome sequence data on drug discovery--a malaria case study. Molecular Medicine (Cambridge, Mass.). 7: 698-710. PMID 11713369 DOI: 10.1007/Bf03401960 |
0.495 |
|
| 2000 |
Goh CS, Bogan AA, Joachimiak M, Walther D, Cohen FE. Co-evolution of proteins with their interaction partners. Journal of Molecular Biology. 299: 283-93. PMID 10860738 DOI: 10.1006/Jmbi.2000.3732 |
0.559 |
|
| 1999 |
Gerloff DL, Cannarozzi GM, Joachimiak M, Cohen FE, Schreiber D, Benner SA. Evolutionary, mechanistic, and predictive analyses of the hydroxymethyldihydropterin pyrophosphokinase family of proteins. Biochemical and Biophysical Research Communications. 254: 70-6. PMID 9920734 DOI: 10.1006/Bbrc.1998.9884 |
0.495 |
|
| 1998 |
Gerloff DL, Joachimiak M, Cohen FE, Cannarozzi GM, Chamberlin SG, Benner SA. Structure prediction in a post-genomic environment: a secondary and tertiary structural model for the initiation factor 5A family. Biochemical and Biophysical Research Communications. 251: 173-81. PMID 9790926 DOI: 10.1006/Bbrc.1998.9198 |
0.52 |
|
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