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Narayanan Raghupathy, Ph.D. - Publications

Affiliations: 
2007 Carnegie Mellon University, Pittsburgh, PA 
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Skelly DA, Czechanski A, Byers C, Aydin S, Spruce C, Olivier C, Choi K, Gatti DM, Raghupathy N, Keele GR, Stanton A, Vincent M, Dion S, Greenstein I, Pankratz M, et al. Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency. Cell Stem Cell. PMID 32795400 DOI: 10.1016/J.Stem.2020.07.005  0.405
2019 Choi K, Raghupathy N, Churchill GA. A Bayesian mixture model for the analysis of allelic expression in single cells. Nature Communications. 10: 5188. PMID 31729374 DOI: 10.1038/S41467-019-13099-0  0.324
2019 Skelly DA, Raghupathy N, Robledo RF, Graber JH, Chesler EJ. Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples. Genetics. PMID 31113812 DOI: 10.1534/Genetics.118.301865  0.382
2019 Sarsani VK, Raghupathy N, Fiddes IT, Armstrong J, Thibaud-Nissen F, Zinder O, Bolisetty M, Howe K, Hinerfeld D, Ruan X, Rowe L, Barter M, Ananda G, Paten B, Weinstock GM, et al. The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain. G3 (Bethesda, Md.). PMID 30996023 DOI: 10.1534/G3.119.400071  0.393
2018 Raghupathy N, Choi K, Vincent MJ, Beane GL, Sheppard K, Munger SC, Korstanje R, Pardo-Manual de Villena F, Churchill GA, Valencia A. Hierarchical Analysis of RNA-Seq Reads Improves the Accuracy of Allele-specific Expression. Bioinformatics (Oxford, England). PMID 29444201 DOI: 10.1093/Bioinformatics/Bty078  0.395
2016 Nair KS, Cosma M, Raghupathy N, Sellarole MA, Tolman NG, de Vries W, Smith RS, John SW. YBR/EiJ mice: a new model of glaucoma caused by genes on chromosomes 4 and 17. Disease Models & Mechanisms. PMID 27483353 DOI: 10.1242/Dmm.024307  0.337
2016 Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP. Defining the consequences of genetic variation on a proteome-wide scale. Nature. PMID 27309819 DOI: 10.1038/Nature18270  0.35
2015 Baker CL, Kajita S, Walker M, Saxl RL, Raghupathy N, Choi K, Petkov PM, Paigen K. PRDM9 drives evolutionary erosion of hotspots in Mus musculus through haplotype-specific initiation of meiotic recombination. Plos Genetics. 11: e1004916. PMID 25568937 DOI: 10.1371/Journal.Pgen.1004916  0.303
2014 Munger SC, Raghupathy N, Choi K, Simons AK, Gatti DM, Hinerfeld DA, Svenson KL, Keller MP, Attie AD, Hibbs MA, Graber JH, Chesler EJ, Churchill GA. RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations. Genetics. 198: 59-73. PMID 25236449 DOI: 10.1534/Genetics.114.165886  0.385
2009 Raghupathy N, Durand D. Gene cluster statistics with gene families. Molecular Biology and Evolution. 26: 957-68. PMID 19150803 DOI: 10.1093/Molbev/Msp002  0.644
2008 Raghupathy N, Hoberman R, Durand D. Two plus two does not equal three: statistical tests for multiple genome comparison. Journal of Bioinformatics and Computational Biology. 6: 1-22. PMID 18324742 DOI: 10.1142/S0219720008003242  0.42
2005 Raghupathy N, Durand D. Individual gene cluster statistics in noisy maps Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3678: 106-120. DOI: 10.1007/11554714_10  0.418
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