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Glen M. Borchert, Ph.D. - Publications

Affiliations: 
Biology University of South Alabama, Mobile, AL, United States 
 2007 University of Iowa, Iowa City, IA 
Area:
MicroRNAs, Transposable Elements & Genomics
Website:
http://www.southalabama.edu/colleges/artsandsci/biology/borchert.html
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24/54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Delcher HA, DeMeis JD, Ghobar N, Godang NL, Knight SL, Alqudah SY, Nguyen KN, Watters BC, Borchert GM. SARS-Cov-2 small viral RNA suppresses gene expression via complementary binding to mRNA 3' UTR. Micropublication Biology. 2024. PMID 38312351 DOI: 10.17912/micropub.biology.000790  0.41
2023 Godang NL, DeMeis JD, Houserova D, Chaudhary NY, Salter CJ, Xi Y, McDonald OG, Borchert GM. Global Switch from DICER-dependent MicroRNA to DICER-independent SnoRNA-derived RNA Biogenesis in Malignancy. Micropublication Biology. 2023. PMID 36818311 DOI: 10.17912/micropub.biology.000725  0.473
2022 Coley AB, DeMeis JD, Chaudhary NY, Borchert GM. Small Nucleolar Derived RNAs as Regulators of Human Cancer. Biomedicines. 10. PMID 36009366 DOI: 10.3390/biomedicines10081819  0.419
2022 Devadoss D, Acharya A, Manevski M, Houserova D, Cioffi MD, Pandey K, Nair M, Chapagain P, Mirsaeidi M, Borchert GM, Byrareddy SN, Chand HS. Immunomodulatory LncRNA on Antisense Strand of ICAM-1 Augments SARS-CoV-2 Infection-associated Airway Mucoinflammatory Phenotype. Iscience. 104685. PMID 35789750 DOI: 10.1016/j.isci.2022.104685  0.305
2019 Barnhill EC, Crucello A, Houserova D, King VM, Amin SV, Roberts JT, Zambrano ME, DeMeis JD, Dahmer DJ, Ijaz Z, Barchie AA, Watters BC, Prusak JE, Dean MA, Holton NW, ... ... Borchert GM, et al. Characterization of novel small RNAs (sRNAs) contributing to the desiccation response of serovar Typhimurium. Rna Biology. PMID 31390935 DOI: 10.1080/15476286.2019.1653680  0.39
2018 Roberts JT, Patterson DG, King VM, Amin SV, Polska CJ, Houserova D, Crucello A, Barnhill EC, Miller MM, Sherman TD, Borchert GM. ADAR Mediated RNA Editing Modulates MicroRNA Targeting in Human Breast Cancer. Processes (Basel, Switzerland). 6. PMID 30197877 DOI: 10.3390/pr6050042  0.503
2017 Roberts JT, Borchert GM. Computational Prediction of MicroRNA Target Genes, Target Prediction Databases, and Web Resources. Methods in Molecular Biology (Clifton, N.J.). 1617: 109-122. PMID 28540680 DOI: 10.1007/978-1-4939-7046-9_8  0.532
2017 Chevalier D, Borchert GM. Genome-Wide Analysis of MicroRNA-Regulated Transcripts. Methods in Molecular Biology (Clifton, N.J.). 1617: 93-107. PMID 28540679 DOI: 10.1007/978-1-4939-7046-9_7  0.571
2017 Cardin SE, Borchert GM. Viral MicroRNAs, Host MicroRNAs Regulating Viruses, and Bacterial MicroRNA-Like RNAs. Methods in Molecular Biology (Clifton, N.J.). 1617: 39-56. PMID 28540675 DOI: 10.1007/978-1-4939-7046-9_3  0.553
2017 King VM, Borchert GM. MicroRNA Expression: Protein Participants in MicroRNA Regulation. Methods in Molecular Biology (Clifton, N.J.). 1617: 27-37. PMID 28540674 DOI: 10.1007/978-1-4939-7046-9_2  0.563
2016 Huang J, Gutierrez F, Strachan HJ, Dou D, Huang W, Smith B, Blake JA, Eilbeck K, Natale DA, Lin Y, Wu B, Silva N, Wang X, Liu Z, Borchert GM, et al. OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. Journal of Biomedical Semantics. 7: 25. PMID 27175225 DOI: 10.1186/S13326-016-0064-2  0.545
2016 Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, He Y, ... ... Borchert GM, et al. The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. Journal of Biomedical Semantics. 7: 24. PMID 27152146 DOI: 10.1186/S13326-016-0066-0  0.342
2016 Amin SV, Roberts JT, Patterson DG, Coley AB, Allred JA, Denner JM, Johnson JP, Mullen GE, O'Neal TK, Smith JT, Cardin SE, Carr HT, Carr SL, Cowart HE, DaCosta DH, ... ... Borchert GM, et al. Novel Small RNA (sRNA) Landscape of the Starvation-Stress Response Transcriptome of Salmonella enterica serovar Typhimurium. Rna Biology. 0. PMID 26853797 DOI: 10.1080/15476286.2016.1144010  0.397
2015 Pastukh VM, Roberts J, Clark DW, Bardwell GC, Patel M, Al-Mehdi AB, Borchert G, Gillespie MN. An Oxidative DNA "Damage" and Repair Mechanism Localized in the VEGF Promoter is Important for Hypoxia-induced VEGF mRNA Expression. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00236.2015. PMID 26432868 DOI: 10.1152/Ajplung.00236.2015  0.309
2014 Roberts JT, Cardin SE, Borchert GM. Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences. Mobile Genetic Elements. 4: e29255. PMID 25054081 DOI: 10.4161/Mge.29255  0.564
2014 Huang J, Dang J, Borchert GM, Eilbeck K, Zhang H, Xiong M, Jiang W, Wu H, Blake JA, Natale DA, Tan M. OMIT: dynamic, semi-automated ontology development for the microRNA domain. Plos One. 9: e100855. PMID 25025130 DOI: 10.1371/Journal.Pone.0100855  0.405
2013 Roberts JT, Cooper EA, Favreau CJ, Howell JS, Lane LG, Mills JE, Newman DC, Perry TJ, Russell ME, Wallace BM, Borchert GM. Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations. Mobile Genetic Elements. 3: e27755. PMID 24475369 DOI: 10.4161/Mge.27755  0.372
2013 Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28  0.314
2012 Filshtein TJ, Mackenzie CO, Dale MD, Dela-Cruz PS, Ernst DM, Frankenberger EA, He C, Heath KL, Jones AS, Jones DK, King ER, Maher MB, Mitchell TJ, Morgan RR, Sirobhushanam S, ... ... Borchert GM, et al. OrbId: Origin-based identification of microRNA targets. Mobile Genetic Elements. 2: 184-192. PMID 23087843 DOI: 10.4161/Mge.21617  0.348
2011 Borchert GM, Holton NW, Williams JD, Hernan WL, Bishop IP, Dembosky JA, Elste JE, Gregoire NS, Kim JA, Koehler WW, Lengerich JC, Medema AA, Nguyen MA, Ower GD, Rarick MA, et al. Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins. Mobile Genetic Elements. 1: 8-17. PMID 22016841 DOI: 10.4161/Mge.1.1.15766  0.379
2011 Borchert GM, Holton NW, Larson ED. Repression of human activation induced cytidine deaminase by miR-93 and miR-155. Bmc Cancer. 11: 347. PMID 21831295 DOI: 10.1186/1471-2407-11-347  0.324
2010 Borchert GM, Holton NW, Edwards KA, Vogel LA, Larson ED. Histone H2A and H2B are monoubiquitinated at AID-targeted loci. Plos One. 5: e11641. PMID 20661291 DOI: 10.1371/Journal.Pone.0011641  0.318
2009 Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL. Adenosine deamination in human transcripts generates novel microRNA binding sites. Human Molecular Genetics. 18: 4801-7. PMID 19776031 DOI: 10.1093/Hmg/Ddp443  0.599
2006 Borchert GM, Lanier W, Davidson BL. RNA polymerase III transcribes human microRNAs. Nature Structural & Molecular Biology. 13: 1097-101. PMID 17099701 DOI: 10.1038/Nsmb1167  0.637
Low-probability matches (unlikely to be authored by this person)
2018 Chen H, Zhang D, Zhang G, Li X, Liang Y, Kasukurthi MV, Li S, Borchert GM, Huang J. A semantics-oriented computational approach to investigate microRNA regulation on glucocorticoid resistance in pediatric acute lymphoblastic leukemia. Bmc Medical Informatics and Decision Making. 18: 57. PMID 30066657 DOI: 10.1186/S12911-018-0637-3  0.299
2020 Williams JD, Houserova D, Johnson BR, Dyniewski B, Berroyer A, French H, Barchie AA, Bilbrey DD, Demeis JD, Ghee KR, Hughes AG, Kreitz NW, McInnis CH, Pudner SC, Reeves MN, ... ... Borchert GM, et al. Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction. Nucleic Acids Research. PMID 32383760 DOI: 10.1093/Nar/Gkaa357  0.289
2019 Devadoss D, Long C, Langley RJ, Manevski M, Nair M, Campos MA, Borchert G, Rahman I, Chand HS. Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease. American Journal of Respiratory Cell and Molecular Biology. PMID 31486667 DOI: 10.1165/Rcmb.2019-0184Tr  0.285
2012 Ehrat EA, Johnson BR, Williams JD, Borchert GM, Larson ED. G-quadruplex recognition activities of E. Coli MutS. Bmc Molecular Biology. 13: 23. PMID 22747774 DOI: 10.1186/1471-2199-13-23  0.271
2021 Houserova D, Dahmer DJ, Amin SV, King VM, Barnhill EC, Zambrano ME, Dean MA, Crucello A, Aria KM, Spector MP, Borchert GM. Characterization of 475 Novel, Putative Small RNAs (sRNAs) in Carbon-Starved Serovar Typhimurium. Antibiotics (Basel, Switzerland). 10. PMID 33809610 DOI: 10.3390/antibiotics10030305  0.268
2016 Ma R, Zhao H, Patterson D, Borchert G, Xi Y. Abstract B32: Oncogenic role of snoRD93 in breast cancer cells Molecular Cancer Research. 14. DOI: 10.1158/1557-3125.Cellcycle16-B32  0.267
2020 Borchert GM, Houserova D, Langley RJ, Gillespie MN, Williams JD. Long G4‐rich Regions in the Human Genome Primarily Function as Enhancers and Form Higher Order, Composite G4 Structures via a Novel Loop:Loop Kissing Interaction The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.04316  0.264
2019 Qiu Y, Huang Y, Tan S, Li D, Van Der Zijp-Tan AC, Borchert GM, Jiang H, Huang J. Exploring Observability of Attractor Cycles in Boolean Networks for Biomarker Detection Ieee Access. 7: 127745-127753. DOI: 10.1109/Access.2019.2937133  0.253
2023 Naaz S, Sakib N, Houserova D, Badve R, Crucello A, Borchert GM. Characterization of a novel sRNA contributing to biofilm formation in serovar Typhimurium. Micropublication Biology. 2023. PMID 37151214 DOI: 10.17912/micropub.biology.000796  0.226
2017 Patterson DG, Roberts JT, King VM, Houserova D, Barnhill EC, Crucello A, Polska CJ, Brantley LW, Kaufman GC, Nguyen M, Santana MW, Schiller IA, Spicciani JS, Zapata AK, Miller MM, ... ... Borchert GM, et al. Human snoRNA-93 is processed into a microRNA-like RNA that promotes breast cancer cell invasion. Npj Breast Cancer. 3: 25. PMID 28702505 DOI: 10.1038/s41523-017-0032-8  0.224
2015 Dale MD, Mortimer EM, Kolli S, Achramowicz E, Borchert G, Juliano SA, Halkyard S, Sietz N, Gatto C, Hester PY, Rubin DA. Bone-remodeling transcript levels are independent of perching in end-of-lay white leghorn chickens. International Journal of Molecular Sciences. 16: 2663-77. PMID 25625518 DOI: 10.3390/Ijms16022663  0.221
2015 Smith JT, Harris JC, Lopez OJ, Valverde L, Borchert GM. "On the job" learning: A bioinformatics course incorporating undergraduates in actual research projects and manuscript submissions. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. 43: 154-61. PMID 25643604 DOI: 10.1002/Bmb.20848  0.215
2019 Renner R, Li S, Huang Y, van der Zijp-Tan AC, Tan S, Li D, Kasukurthi MV, Benton R, Borchert GM, Huang J, Jiang G. Using an artificial neural network to map cancer common data elements to the biomedical research integrated domain group model in a semi-automated manner. Bmc Medical Informatics and Decision Making. 19: 276. PMID 31865899 DOI: 10.1186/S12911-019-0979-5  0.208
2020 Daly G, Houserova D, Francis CM, Andrews J, Langley RJ, Pastukh VM, Bass HW, Borchert GM, Gillespie MN. The Genome‐wide Landscape of Oxidative Base Damage in Hypoxia; Potential Role in Metabolic Reprogramming in Chronic Lung Disease The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.04056  0.207
2016 Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, De Silva N, ... ... Borchert GM, et al. The development of non-coding RNA ontology International Journal of Data Mining and Bioinformatics. 15: 214-232. DOI: 10.1504/IJDMB.2016.077072  0.2
2016 Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, de Silva N, ... ... Borchert GM, et al. The development of non-coding RNA ontology. International Journal of Data Mining and Bioinformatics. 15: 214-232. PMID 27990175 DOI: 10.1504/IJDMB.2016.077072  0.2
2019 Ma B, Li C, Wu Z, Huang Y, van der Zijp-Tan AC, Tan S, Li D, Fong A, Basetty C, Borchert GM, Benton R, Wu B, Huang J. Muscle fatigue detection and treatment system driven by internet of things. Bmc Medical Informatics and Decision Making. 19: 275. PMID 31865898 DOI: 10.1186/S12911-019-0982-X  0.182
2015 Borchert GM. Fully mining RNA-Seqdata for noncoding RNA analyses Transcriptomics: Open Access. 2. DOI: 10.4172/2329-8936.S1.001  0.174
2021 Devadoss D, Acharya A, Manevski M, Pandey K, Borchert GM, Nair M, Mirsaeidi M, Byrareddy SN, Chand HS. Distinct Mucoinflammatory Phenotype and the Immunomodulatory Long Noncoding Transcripts Associated with SARS-CoV-2 Airway Infection. Medrxiv : the Preprint Server For Health Sciences. PMID 34031668 DOI: 10.1101/2021.05.13.21257152  0.168
2020 Devadoss D, Daly G, Manevski M, Houserova D, Hussain SS, Baumlin N, Salathe M, Borchert GM, Langley RJ, Chand HS. A long noncoding RNA antisense to ICAM-1 is involved in allergic asthma associated hyperreactive response of airway epithelial cells. Mucosal Immunology. PMID 33122732 DOI: 10.1038/s41385-020-00352-9  0.163
2015 Borchert GM. MicroRNA Sponge Production Using PCR-Based Concatemerization of Short DNA Oligonucleotides Moj Cell Science & Report. 2. DOI: 10.15406/mojcsr.2015.02.00025  0.162
2019 Qiu Y, Huang Y, Tan S, Dongqi LI, VAN DER Zijp-Tan AC, Borchert GM, Jiang H, Huang J. Exploring Observability of Attractor Cycles in Boolean Networks for Biomarker Detection. Ieee Access : Practical Innovations, Open Solutions. 7: 127745-127753. PMID 33598376 DOI: 10.1109/access.2019.2937133  0.134
2022 Manevski M, Devadoss D, Long C, Singh SP, Nasser MW, Borchert GM, Nair MN, Rahman I, Sopori M, Chand HS. Increased Expression of lncRNA Regulates the Cigarette Smoke and COPD Associated Airway Inflammation and Mucous Cell Hyperplasia. Frontiers in Immunology. 13: 803362. PMID 35774797 DOI: 10.3389/fimmu.2022.803362  0.125
2023 Olliff NS, Hunt MA, Paudel SS, Nguyen KN, Delcher HA, DeMeis JD, Roberts JT, Fouty BW, Audia JP, Kim JH, Borchert GM. Human YRNA 4 (HY4) plasma levels are a prognostic indicator of SARS-CoV-2 infection clinical severity. Micropublication Biology. 2023. PMID 37662051 DOI: 10.17912/micropub.biology.000925  0.113
2022 Coley AB, Stahly AN, Kasukurthi MV, Barchie AA, Hutcheson SB, Houserova D, Huang Y, Watters BC, King VM, Dean MA, Roberts JT, DeMeis JD, Amin KV, McInnis CH, Godang NL, ... ... Borchert GM, et al. MicroRNA-like snoRNA-Derived RNAs (sdRNAs) Promote Castration-Resistant Prostate Cancer. Cells. 11. PMID 35455981 DOI: 10.3390/cells11081302  0.112
2022 Manevski M, Devadoss D, Long C, Singh SP, Nasser MW, Borchert GM, Nair MN, Rahman I, Sopori M, Chand HS. Corrigendum: Increased expression of LncRNA regulates the cigarette smoke and COPD associated airway inflammation and mucous cell hyperplasia. Frontiers in Immunology. 13: 988069. PMID 36003371 DOI: 10.3389/fimmu.2022.988069  0.095
2023 Lee JY, Stevens RP, Pastukh VV, Pastukh VM, Kozhukhar N, Alexeyev MF, Reisz JA, Nerguizian D, D'Alessandro A, Koloteva A, Gwin MS, Roberts JT, Borchert GM, Wagener BM, Pittet JF, et al. PFKFB3 Inhibits Fructose Metabolism in Pulmonary Microvascular Endothelial Cells. American Journal of Respiratory Cell and Molecular Biology. PMID 37201952 DOI: 10.1165/rcmb.2022-0443OC  0.066
2020 Li J, Zhang Z, Li S, Benton R, Huang Y, Kasukurthi MV, Li D, Lin J, Borchert GM, Tan S, Li G, Ma B, Yang M, Huang J. A partial encryption algorithm for medical images based on quick response code and reversible data hiding technology. Bmc Medical Informatics and Decision Making. 20: 297. PMID 33323108 DOI: 10.1186/s12911-020-01328-2  0.042
2021 Huang F, Leng X, Kasukurthi MV, Huang Y, Li D, Tan S, Lu G, Lu J, Benton RG, Borchert GM, Huang J. Utilizing Machine Learning Techniques to Predict the Efficacy of Aerobic Exercise Intervention on Young Hypertensive Patients Based on Cardiopulmonary Exercise Testing. Journal of Healthcare Engineering. 2021: 6633832. PMID 33968353 DOI: 10.1155/2021/6633832  0.014
2020 Ma B, Wu Z, Li S, Benton R, Li D, Huang Y, Kasukurthi MV, Lin J, Borchert GM, Tan S, Li G, Yang M, Huang J. Development of a support vector machine learning and smart phone Internet of Things-based architecture for real-time sleep apnea diagnosis. Bmc Medical Informatics and Decision Making. 20: 298. PMID 33323112 DOI: 10.1186/s12911-020-01329-1  0.013
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